Wall clock time and date at job start Mon Mar 30 2020 02:06:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47164 * 2 1 4 4 C 1.50696 * 109.47238 * 179.97438 * 3 2 1 5 5 H 1.08003 * 119.99953 * 0.02562 * 4 3 2 6 6 C 1.37877 * 120.00530 * 179.97438 * 4 3 2 7 7 N 1.31515 * 119.99491 * 0.02562 * 6 4 3 8 8 Si 1.86800 * 120.00192 * 180.02562 * 6 4 3 9 9 H 1.48504 * 109.47104 * 90.00469 * 8 6 4 10 10 H 1.48504 * 109.47118 * 210.00220 * 8 6 4 11 11 H 1.48499 * 109.47293 * 330.00224 * 8 6 4 12 12 O 1.42957 * 109.47042 * 239.99797 * 2 1 3 13 13 C 1.43092 * 113.77318 * 298.79838 * 12 2 1 14 14 C 1.53265 * 108.93966 * 302.03040 * 13 12 2 15 15 C 1.53255 * 108.84444 * 54.52351 * 14 13 12 16 16 O 1.42969 * 109.46668 * 119.99838 * 2 1 3 17 17 H 1.09001 * 109.47002 * 59.99738 * 1 2 3 18 18 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 19 19 H 1.09000 * 109.47050 * 300.00004 * 1 2 3 20 20 H 1.09001 * 109.47375 * 300.00034 * 3 2 1 21 21 H 1.09000 * 109.47140 * 60.00051 * 3 2 1 22 22 H 0.97006 * 119.99590 * 179.97438 * 7 6 4 23 23 H 1.09006 * 109.55712 * 182.19407 * 13 12 2 24 24 H 1.09000 * 109.64771 * 61.91973 * 13 12 2 25 25 H 1.09005 * 109.57251 * 294.71413 * 14 13 12 26 26 H 1.08998 * 109.67680 * 174.40075 * 14 13 12 27 27 H 1.08999 * 109.55538 * 185.63407 * 15 14 13 28 28 H 1.08996 * 109.64552 * 65.37005 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5470 1.4425 0.0006 5 1 4.0870 0.5072 0.0006 6 6 4.2365 2.6365 0.0002 7 7 3.5789 3.7754 -0.0002 8 14 6.1045 2.6364 0.0003 9 1 6.5996 2.6360 -1.3998 10 1 6.5995 3.8491 0.6999 11 1 6.5995 1.4241 0.7007 12 8 2.0066 -0.6739 -1.1672 13 6 1.6041 -2.0448 -1.2465 14 6 2.1043 -2.7830 0.0001 15 6 1.6040 -2.0448 1.2465 16 8 2.0065 -0.6739 1.1674 17 1 -0.3633 0.5139 -0.8900 18 1 -0.3633 -1.0276 0.0005 19 1 -0.3633 0.5138 0.8900 20 1 1.6767 1.9563 -0.8900 21 1 1.6767 1.9563 0.8900 22 1 4.0640 4.6155 -0.0002 23 1 2.0350 -2.5007 -2.1380 24 1 0.5168 -2.1054 -1.2947 25 1 3.1941 -2.8027 0.0001 26 1 1.7206 -3.8032 0.0012 27 1 2.0348 -2.5007 2.1380 28 1 0.5168 -2.1037 1.2956 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049804612.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:33 Heat of formation + Delta-G solvation = -124.683208 kcal Electronic energy + Delta-G solvation = -12148.962966 eV Core-core repulsion = 9970.881284 eV Total energy + Delta-G solvation = -2178.081681 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -41.07283 -36.43317 -35.51567 -33.79669 -31.35304 -29.45756 -26.72908 -25.46435 -23.10822 -20.60227 -18.52464 -18.42927 -17.26237 -16.55745 -16.01819 -15.62764 -15.61527 -14.41838 -14.08355 -13.74390 -13.63802 -13.35865 -13.20553 -12.65461 -12.61396 -12.28142 -12.25624 -11.76278 -11.46036 -11.27190 -10.78702 -10.55639 -10.19360 -8.16408 -6.21804 1.38974 1.41432 1.52864 2.44490 2.88126 3.00268 3.21176 3.85240 3.91893 3.96930 4.13759 4.33430 4.47877 4.57154 4.62430 4.80768 4.89492 4.99081 5.09430 5.22456 5.38580 5.39704 5.79285 6.10370 6.39665 6.60334 6.86945 7.42913 8.96173 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.052559 B = 0.013088 C = 0.011960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 532.611040 B = 2138.820056 C = 2340.508610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.276 3.724 3 C 0.043 3.957 4 C -0.507 4.507 5 H 0.049 0.951 6 C -0.005 4.005 7 N -0.937 5.937 8 Si 0.964 3.036 9 H -0.273 1.273 10 H -0.278 1.278 11 H -0.270 1.270 12 O -0.405 6.405 13 C 0.038 3.962 14 C -0.183 4.183 15 C 0.038 3.962 16 O -0.405 6.405 17 H 0.073 0.927 18 H 0.083 0.917 19 H 0.073 0.927 20 H 0.015 0.985 21 H 0.015 0.985 22 H 0.263 0.737 23 H 0.105 0.895 24 H 0.070 0.930 25 H 0.059 0.941 26 H 0.116 0.884 27 H 0.105 0.895 28 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.441 -12.503 -0.015 13.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C 0.200 3.800 3 C 0.006 3.994 4 C -0.545 4.545 5 H 0.067 0.933 6 C -0.201 4.201 7 N -0.578 5.578 8 Si 0.789 3.211 9 H -0.198 1.198 10 H -0.203 1.203 11 H -0.195 1.195 12 O -0.326 6.326 13 C -0.038 4.038 14 C -0.221 4.221 15 C -0.038 4.038 16 O -0.326 6.326 17 H 0.092 0.908 18 H 0.102 0.898 19 H 0.092 0.908 20 H 0.033 0.967 21 H 0.033 0.967 22 H 0.072 0.928 23 H 0.123 0.877 24 H 0.088 0.912 25 H 0.078 0.922 26 H 0.135 0.865 27 H 0.123 0.877 28 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -5.197 -12.140 -0.011 13.206 hybrid contribution 0.638 0.146 -0.005 0.654 sum -4.559 -11.994 -0.016 12.832 Atomic orbital electron populations 1.22740 0.94815 1.03652 1.03803 1.22873 0.91044 0.91008 0.75079 1.18932 0.96362 0.87998 0.96132 1.21274 0.92444 0.92163 1.48656 0.93272 1.25897 1.03730 0.95172 0.95337 1.70068 1.37289 0.97759 1.52699 0.85460 0.79637 0.77615 0.78388 1.19823 1.20290 1.19511 1.88248 1.76701 1.24411 1.43249 1.22922 0.99956 0.81735 0.99169 1.22720 1.02051 1.01508 0.95812 1.22923 0.99950 0.81749 0.99181 1.88252 1.76720 1.24411 1.43251 0.90778 0.89812 0.90789 0.96676 0.96673 0.92800 0.87696 0.91233 0.92204 0.86536 0.87732 0.91232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -6.67 8.11 71.98 0.58 -6.08 15 2 C 0.28 12.46 1.04 30.60 0.03 12.49 15 3 C 0.04 2.40 4.46 29.85 0.13 2.54 15 4 C -0.51 -31.19 8.44 25.60 0.22 -30.97 15 5 H 0.05 3.07 7.65 -2.91 -0.02 3.05 15 6 C 0.00 -0.30 5.46 84.65 0.46 0.16 15 7 N -0.94 -58.96 13.29 21.45 0.28 -58.68 15 8 Si 0.96 47.31 29.54 68.60 2.03 49.33 15 9 H -0.27 -12.90 7.11 99.48 0.71 -12.19 15 10 H -0.28 -13.05 7.11 99.48 0.71 -12.34 15 11 H -0.27 -12.98 7.11 99.48 0.71 -12.27 15 12 O -0.40 -17.93 9.94 -126.22 -1.25 -19.18 15 13 C 0.04 1.16 6.59 72.07 0.48 1.63 15 14 C -0.18 -4.96 6.35 30.77 0.20 -4.76 15 15 C 0.04 1.15 6.59 72.07 0.48 1.63 15 16 O -0.41 -17.97 9.94 -126.22 -1.25 -19.22 15 17 H 0.07 2.50 8.14 -2.39 -0.02 2.48 15 18 H 0.08 2.30 5.12 -2.39 -0.01 2.28 15 19 H 0.07 2.49 8.14 -2.39 -0.02 2.47 15 20 H 0.02 0.90 8.14 -2.39 -0.02 0.88 15 21 H 0.02 0.90 8.14 -2.39 -0.02 0.88 15 22 H 0.26 15.51 8.31 -92.70 -0.77 14.74 15 23 H 0.10 2.75 8.14 -2.38 -0.02 2.73 15 24 H 0.07 1.75 6.54 -2.39 -0.02 1.73 15 25 H 0.06 1.85 8.14 -2.38 -0.02 1.83 15 26 H 0.12 2.11 8.14 -2.39 -0.02 2.09 15 27 H 0.10 2.75 8.14 -2.39 -0.02 2.73 15 28 H 0.07 1.75 6.53 -2.39 -0.02 1.74 15 Total: -1.00 -71.80 230.35 3.50 -68.29 By element: Atomic # 1 Polarization: 1.69 SS G_CDS: 1.13 Total: 2.82 kcal Atomic # 6 Polarization: -25.94 SS G_CDS: 2.57 Total: -23.37 kcal Atomic # 7 Polarization: -58.96 SS G_CDS: 0.28 Total: -58.68 kcal Atomic # 8 Polarization: -35.89 SS G_CDS: -2.51 Total: -38.40 kcal Atomic # 14 Polarization: 47.31 SS G_CDS: 2.03 Total: 49.33 kcal Total: -71.80 3.50 -68.29 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049804612.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.390 kcal (2) G-P(sol) polarization free energy of solvation -71.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds