Wall clock time and date at job start Mon Mar 30 2020 02:14:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.50706 * 109.47238 * 120.00151 * 2 1 3 5 5 H 1.07999 * 120.00196 * 119.99595 * 4 2 1 6 6 C 1.37879 * 119.99394 * 299.99727 * 4 2 1 7 7 N 1.31514 * 119.99350 * 179.97438 * 6 4 2 8 8 Si 1.86789 * 120.00458 * 0.02562 * 6 4 2 9 9 H 1.48500 * 109.47356 * 89.99481 * 8 6 4 10 10 H 1.48501 * 109.47162 * 209.99853 * 8 6 4 11 11 H 1.48503 * 109.47180 * 329.99546 * 8 6 4 12 12 C 1.52999 * 109.47317 * 239.99669 * 2 1 3 13 13 O 1.42961 * 109.47660 * 180.02562 * 12 2 1 14 14 C 1.43092 * 113.77199 * 181.20722 * 13 12 2 15 15 C 1.53263 * 108.94191 * 57.97495 * 14 13 12 16 16 C 1.53262 * 108.83972 * 305.47190 * 15 14 13 17 17 O 1.42975 * 109.46766 * 59.99963 * 12 2 1 18 18 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 19 19 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 20 20 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 21 21 H 0.97005 * 119.99656 * 180.02562 * 7 6 4 22 22 H 1.09001 * 109.47362 * 300.00732 * 12 2 1 23 23 H 1.08994 * 109.55991 * 298.13104 * 14 13 12 24 24 H 1.09007 * 109.64609 * 177.86267 * 14 13 12 25 25 H 1.09003 * 109.56945 * 185.66803 * 15 14 13 26 26 H 1.08994 * 109.57556 * 65.28331 * 15 14 13 27 27 H 1.09004 * 109.56185 * 294.68611 * 16 15 14 28 28 H 1.09004 * 109.55332 * 174.36544 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 2.1372 -0.8596 3.5565 8 14 0.6248 1.2790 2.6541 9 1 -0.8028 0.8727 2.6997 10 1 0.9760 1.9951 3.9068 11 1 0.8471 2.1765 1.4920 12 6 2.0400 -0.7213 -1.2492 13 8 3.4696 -0.7219 -1.2489 14 6 4.0464 -1.3527 -2.3965 15 6 3.5439 -0.6439 -3.6591 16 6 2.0114 -0.6321 -3.6433 17 8 1.5634 -0.0473 -2.4166 18 1 -0.3633 0.5138 -0.8900 19 1 -0.3633 0.5139 0.8900 20 1 -0.3634 -1.0277 0.0005 21 1 1.9026 -0.5284 4.4375 22 1 1.6766 -1.7490 -1.2492 23 1 3.7499 -2.4012 -2.4242 24 1 5.1330 -1.2820 -2.3463 25 1 3.8960 -1.1774 -4.5420 26 1 3.9169 0.3801 -3.6759 27 1 1.6378 -1.6533 -3.7182 28 1 1.6424 -0.0443 -4.4839 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049804613.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:19 Heat of formation + Delta-G solvation = -97.856417 kcal Electronic energy + Delta-G solvation = -12045.219972 eV Core-core repulsion = 9868.301587 eV Total energy + Delta-G solvation = -2176.918384 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -39.34784 -35.04726 -34.54113 -32.04343 -30.71008 -25.74082 -25.08440 -24.54260 -20.89967 -19.87227 -17.01016 -16.42636 -15.87529 -15.23298 -14.76034 -14.29886 -14.07208 -13.01180 -12.82921 -12.73513 -12.09560 -11.48668 -11.24411 -11.00524 -10.81099 -10.61158 -10.23410 -9.88247 -9.55067 -9.38198 -9.08513 -8.89061 -8.50794 -6.01782 -4.00481 3.32430 3.43693 3.47316 4.22540 4.33612 4.46746 4.97243 4.98711 5.31571 5.35828 5.46944 5.62925 5.76791 5.85244 5.98970 6.17420 6.27912 6.46361 6.65865 6.72805 7.04285 7.25252 7.63009 7.72520 7.95777 8.55561 9.02587 9.58887 11.11353 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.062110 B = 0.013053 C = 0.011504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 450.704661 B = 2144.650755 C = 2433.260587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.026 3.974 3 H 0.042 0.958 4 C -0.504 4.504 5 H 0.078 0.922 6 C 0.070 3.930 7 N -0.901 5.901 8 Si 0.888 3.112 9 H -0.279 1.279 10 H -0.297 1.297 11 H -0.265 1.265 12 C 0.265 3.735 13 O -0.370 6.370 14 C 0.052 3.948 15 C -0.191 4.191 16 C 0.056 3.944 17 O -0.397 6.397 18 H 0.040 0.960 19 H 0.043 0.957 20 H 0.051 0.949 21 H 0.264 0.736 22 H 0.048 0.952 23 H 0.046 0.954 24 H 0.091 0.909 25 H 0.075 0.925 26 H 0.078 0.922 27 H 0.046 0.954 28 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.182 0.155 -12.618 12.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.007 3.993 3 H 0.060 0.940 4 C -0.542 4.542 5 H 0.096 0.904 6 C -0.131 4.131 7 N -0.539 5.539 8 Si 0.718 3.282 9 H -0.206 1.206 10 H -0.225 1.225 11 H -0.190 1.190 12 C 0.171 3.829 13 O -0.290 6.290 14 C -0.025 4.025 15 C -0.229 4.229 16 C -0.021 4.021 17 O -0.318 6.318 18 H 0.059 0.941 19 H 0.061 0.939 20 H 0.070 0.930 21 H 0.073 0.927 22 H 0.066 0.934 23 H 0.064 0.936 24 H 0.109 0.891 25 H 0.094 0.906 26 H 0.096 0.904 27 H 0.065 0.935 28 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -0.191 0.391 -12.247 12.255 hybrid contribution -0.475 0.347 -0.116 0.600 sum -0.666 0.738 -12.363 12.403 Atomic orbital electron populations 1.22049 0.97867 1.00850 0.99226 1.19118 0.92118 0.97483 0.90599 0.94030 1.20799 1.31747 1.13675 0.87998 0.90411 1.24929 0.95835 0.96657 0.95685 1.69890 1.45759 1.40410 0.97857 0.86839 0.80447 0.83891 0.76975 1.20597 1.22496 1.18999 1.23663 0.78429 0.95007 0.85784 1.88314 1.21481 1.78600 1.40586 1.22555 0.98960 0.95330 0.85682 1.22788 0.97847 1.02862 0.99431 1.22517 0.93151 0.98170 0.88250 1.88147 1.72119 1.57299 1.14278 0.94105 0.93855 0.93037 0.92652 0.93413 0.93591 0.89078 0.90623 0.90354 0.93529 0.89275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.25 8.53 37.16 0.32 -2.94 15 2 C 0.03 0.65 1.91 -91.77 -0.18 0.48 15 3 H 0.04 1.11 7.20 -51.93 -0.37 0.73 15 4 C -0.50 -14.69 8.81 -34.44 -0.30 -14.99 15 5 H 0.08 2.45 7.94 -52.49 -0.42 2.04 15 6 C 0.07 2.08 5.45 -17.82 -0.10 1.98 15 7 N -0.90 -28.09 13.96 55.43 0.77 -27.32 15 8 Si 0.89 22.60 24.37 -169.99 -4.14 18.46 15 9 H -0.28 -6.83 6.87 56.52 0.39 -6.45 15 10 H -0.30 -7.53 7.11 56.52 0.40 -7.13 15 11 H -0.26 -6.56 6.53 56.52 0.37 -6.19 15 12 C 0.27 5.89 2.68 37.16 0.10 5.99 15 13 O -0.37 -8.24 10.13 -59.03 -0.60 -8.84 15 14 C 0.05 0.84 6.96 37.29 0.26 1.10 15 15 C -0.19 -2.60 6.36 -26.46 -0.17 -2.77 15 16 C 0.06 0.83 6.96 37.29 0.26 1.09 15 17 O -0.40 -7.91 9.87 -59.03 -0.58 -8.49 15 18 H 0.04 0.83 7.68 -51.93 -0.40 0.43 15 19 H 0.04 1.02 3.27 -51.93 -0.17 0.85 15 20 H 0.05 1.11 8.14 -51.93 -0.42 0.69 15 21 H 0.26 7.69 8.31 -40.82 -0.34 7.35 15 22 H 0.05 1.04 8.14 -51.93 -0.42 0.62 15 23 H 0.05 0.69 8.14 -51.93 -0.42 0.27 15 24 H 0.09 1.29 8.14 -51.93 -0.42 0.87 15 25 H 0.08 0.78 8.14 -51.93 -0.42 0.36 15 26 H 0.08 1.10 8.14 -51.93 -0.42 0.68 15 27 H 0.05 0.63 8.14 -51.93 -0.42 0.20 15 28 H 0.09 1.09 8.14 -51.93 -0.42 0.67 15 LS Contribution 226.02 15.07 3.41 3.41 Total: -1.00 -31.98 226.02 -4.87 -36.85 By element: Atomic # 1 Polarization: -0.09 SS G_CDS: -3.92 Total: -4.02 kcal Atomic # 6 Polarization: -10.25 SS G_CDS: 0.19 Total: -10.06 kcal Atomic # 7 Polarization: -28.09 SS G_CDS: 0.77 Total: -27.32 kcal Atomic # 8 Polarization: -16.14 SS G_CDS: -1.18 Total: -17.32 kcal Atomic # 14 Polarization: 22.60 SS G_CDS: -4.14 Total: 18.46 kcal Total LS contribution 3.41 Total: 3.41 kcal Total: -31.98 -4.87 -36.85 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049804613.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.004 kcal (2) G-P(sol) polarization free energy of solvation -31.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds