Wall clock time and date at job start Mon Mar 30 2020 02:14:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.50706 * 109.47238 * 120.00151 * 2 1 3 5 5 H 1.07999 * 120.00196 * 119.99595 * 4 2 1 6 6 C 1.37879 * 119.99394 * 299.99727 * 4 2 1 7 7 N 1.31514 * 119.99350 * 179.97438 * 6 4 2 8 8 Si 1.86789 * 120.00458 * 0.02562 * 6 4 2 9 9 H 1.48500 * 109.47356 * 89.99481 * 8 6 4 10 10 H 1.48501 * 109.47162 * 209.99853 * 8 6 4 11 11 H 1.48503 * 109.47180 * 329.99546 * 8 6 4 12 12 C 1.52999 * 109.47317 * 239.99669 * 2 1 3 13 13 O 1.42961 * 109.47660 * 180.02562 * 12 2 1 14 14 C 1.43092 * 113.77199 * 181.20722 * 13 12 2 15 15 C 1.53263 * 108.94191 * 57.97495 * 14 13 12 16 16 C 1.53262 * 108.83972 * 305.47190 * 15 14 13 17 17 O 1.42975 * 109.46766 * 59.99963 * 12 2 1 18 18 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 19 19 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 20 20 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 21 21 H 0.97005 * 119.99656 * 180.02562 * 7 6 4 22 22 H 1.09001 * 109.47362 * 300.00732 * 12 2 1 23 23 H 1.08994 * 109.55991 * 298.13104 * 14 13 12 24 24 H 1.09007 * 109.64609 * 177.86267 * 14 13 12 25 25 H 1.09003 * 109.56945 * 185.66803 * 15 14 13 26 26 H 1.08994 * 109.57556 * 65.28331 * 15 14 13 27 27 H 1.09004 * 109.56185 * 294.68611 * 16 15 14 28 28 H 1.09004 * 109.55332 * 174.36544 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 2.1372 -0.8596 3.5565 8 14 0.6248 1.2790 2.6541 9 1 -0.8028 0.8727 2.6997 10 1 0.9760 1.9951 3.9068 11 1 0.8471 2.1765 1.4920 12 6 2.0400 -0.7213 -1.2492 13 8 3.4696 -0.7219 -1.2489 14 6 4.0464 -1.3527 -2.3965 15 6 3.5439 -0.6439 -3.6591 16 6 2.0114 -0.6321 -3.6433 17 8 1.5634 -0.0473 -2.4166 18 1 -0.3633 0.5138 -0.8900 19 1 -0.3633 0.5139 0.8900 20 1 -0.3634 -1.0277 0.0005 21 1 1.9026 -0.5284 4.4375 22 1 1.6766 -1.7490 -1.2492 23 1 3.7499 -2.4012 -2.4242 24 1 5.1330 -1.2820 -2.3463 25 1 3.8960 -1.1774 -4.5420 26 1 3.9169 0.3801 -3.6759 27 1 1.6378 -1.6533 -3.7182 28 1 1.6424 -0.0443 -4.4839 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049804613.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:18 Heat of formation + Delta-G solvation = -121.063491 kcal Electronic energy + Delta-G solvation = -12046.226306 eV Core-core repulsion = 9868.301587 eV Total energy + Delta-G solvation = -2177.924719 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -40.82880 -36.55452 -36.42868 -33.88474 -32.40018 -27.34977 -26.62032 -26.46773 -22.21261 -21.73333 -18.97517 -18.08705 -17.41559 -16.83382 -16.50800 -15.61454 -15.57731 -14.82355 -14.66858 -14.20960 -13.99504 -13.12058 -12.92159 -12.68045 -12.36073 -12.20004 -11.96005 -11.68873 -11.29249 -11.19437 -10.83975 -10.73376 -10.51489 -8.29378 -6.33337 1.31210 1.38276 1.49219 2.33674 2.78613 2.84383 3.09518 3.84795 3.85667 3.95563 4.23928 4.35434 4.47647 4.49370 4.69445 4.74888 4.82836 4.88044 4.95003 5.12452 5.19812 5.49222 5.61371 6.07859 6.24813 6.42085 6.71621 7.29902 8.87479 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.062110 B = 0.013053 C = 0.011504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 450.704661 B = 2144.650755 C = 2433.260587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.020 3.980 3 H 0.026 0.974 4 C -0.509 4.509 5 H 0.035 0.965 6 C 0.013 3.987 7 N -0.947 5.947 8 Si 0.952 3.048 9 H -0.259 1.259 10 H -0.296 1.296 11 H -0.254 1.254 12 C 0.274 3.726 13 O -0.411 6.411 14 C 0.037 3.963 15 C -0.181 4.181 16 C 0.043 3.957 17 O -0.412 6.412 18 H 0.066 0.934 19 H 0.037 0.963 20 H 0.056 0.944 21 H 0.267 0.733 22 H 0.046 0.954 23 H 0.056 0.944 24 H 0.107 0.893 25 H 0.117 0.883 26 H 0.072 0.928 27 H 0.061 0.939 28 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.128 0.959 -14.663 14.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.001 3.999 3 H 0.044 0.956 4 C -0.547 4.547 5 H 0.054 0.946 6 C -0.184 4.184 7 N -0.588 5.588 8 Si 0.778 3.222 9 H -0.184 1.184 10 H -0.224 1.224 11 H -0.178 1.178 12 C 0.180 3.820 13 O -0.332 6.332 14 C -0.039 4.039 15 C -0.219 4.219 16 C -0.033 4.033 17 O -0.334 6.334 18 H 0.085 0.915 19 H 0.056 0.944 20 H 0.075 0.925 21 H 0.076 0.924 22 H 0.063 0.937 23 H 0.074 0.926 24 H 0.125 0.875 25 H 0.135 0.865 26 H 0.091 0.909 27 H 0.080 0.920 28 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -1.137 1.184 -14.330 14.424 hybrid contribution -0.061 0.003 0.420 0.424 sum -1.198 1.188 -13.910 14.012 Atomic orbital electron populations 1.21940 0.95669 1.01593 1.00147 1.19045 0.93949 0.96212 0.90651 0.95608 1.20987 1.30948 1.12613 0.90160 0.94640 1.25811 0.97384 1.00022 0.95178 1.70033 1.47649 1.42526 0.98573 0.85808 0.79370 0.79852 0.77164 1.18425 1.22363 1.17791 1.23150 0.78731 0.94314 0.85814 1.88241 1.21564 1.79642 1.43766 1.22946 0.99791 0.95913 0.85251 1.22739 0.96989 1.02757 0.99424 1.22957 0.94076 0.99515 0.86755 1.88078 1.72375 1.57738 1.15163 0.91481 0.94432 0.92469 0.92381 0.93660 0.92617 0.87514 0.86494 0.90909 0.92049 0.86196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.96 8.53 71.98 0.61 -5.34 15 2 C 0.02 1.03 1.91 -11.54 -0.02 1.01 15 3 H 0.03 1.37 7.20 -2.39 -0.02 1.35 15 4 C -0.51 -30.43 8.81 25.60 0.23 -30.21 15 5 H 0.04 2.35 7.94 -2.91 -0.02 2.32 15 6 C 0.01 0.78 5.45 84.66 0.46 1.24 15 7 N -0.95 -60.61 13.96 21.45 0.30 -60.31 15 8 Si 0.95 46.39 24.37 68.60 1.67 48.06 15 9 H -0.26 -11.71 6.87 99.48 0.68 -11.03 15 10 H -0.30 -14.25 7.11 99.48 0.71 -13.55 15 11 H -0.25 -11.81 6.53 99.48 0.65 -11.16 15 12 C 0.27 12.06 2.68 71.98 0.19 12.26 15 13 O -0.41 -18.37 10.13 -126.22 -1.28 -19.65 15 14 C 0.04 1.14 6.96 72.07 0.50 1.65 15 15 C -0.18 -4.35 6.36 30.77 0.20 -4.15 15 16 C 0.04 1.12 6.96 72.07 0.50 1.62 15 17 O -0.41 -15.52 9.87 -126.22 -1.25 -16.76 15 18 H 0.07 2.56 7.68 -2.39 -0.02 2.54 15 19 H 0.04 1.66 3.27 -2.39 -0.01 1.65 15 20 H 0.06 2.39 8.14 -2.38 -0.02 2.37 15 21 H 0.27 15.92 8.31 -92.70 -0.77 15.14 15 22 H 0.05 1.98 8.14 -2.39 -0.02 1.96 15 23 H 0.06 1.58 8.14 -2.39 -0.02 1.56 15 24 H 0.11 2.87 8.14 -2.38 -0.02 2.85 15 25 H 0.12 1.86 8.14 -2.39 -0.02 1.84 15 26 H 0.07 1.84 8.14 -2.39 -0.02 1.82 15 27 H 0.06 1.43 8.14 -2.38 -0.02 1.41 15 28 H 0.12 2.41 8.14 -2.38 -0.02 2.39 15 Total: -1.00 -70.27 226.02 3.17 -67.11 By element: Atomic # 1 Polarization: 2.44 SS G_CDS: 1.05 Total: 3.49 kcal Atomic # 6 Polarization: -24.61 SS G_CDS: 2.67 Total: -21.94 kcal Atomic # 7 Polarization: -60.61 SS G_CDS: 0.30 Total: -60.31 kcal Atomic # 8 Polarization: -33.89 SS G_CDS: -2.52 Total: -36.41 kcal Atomic # 14 Polarization: 46.39 SS G_CDS: 1.67 Total: 48.06 kcal Total: -70.27 3.17 -67.11 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049804613.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.954 kcal (2) G-P(sol) polarization free energy of solvation -70.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds