Wall clock time and date at job start Mon Mar 30 2020 02:14:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09002 * 109.47175 * 2 1 4 4 C 1.50704 * 109.47065 * 240.00403 * 2 1 3 5 5 H 1.07998 * 119.99907 * 245.34025 * 4 2 1 6 6 C 1.37874 * 120.00172 * 65.34611 * 4 2 1 7 7 N 1.31515 * 119.99791 * 5.42192 * 6 4 2 8 8 Si 1.86797 * 120.00146 * 185.14856 * 6 4 2 9 9 H 1.48501 * 109.47137 * 84.99639 * 8 6 4 10 10 H 1.48498 * 109.47251 * 204.99447 * 8 6 4 11 11 H 1.48501 * 109.47319 * 324.99897 * 8 6 4 12 12 C 1.52996 * 109.47598 * 120.00503 * 2 1 3 13 13 O 1.42967 * 109.47191 * 59.99555 * 12 2 1 14 14 C 1.43085 * 113.77373 * 181.21218 * 13 12 2 15 15 C 1.53262 * 108.94564 * 57.96960 * 14 13 12 16 16 C 1.53264 * 108.84258 * 305.48184 * 15 14 13 17 17 O 1.42971 * 109.46778 * 299.99911 * 12 2 1 18 18 H 1.09005 * 109.47270 * 54.97501 * 1 2 3 19 19 H 1.09002 * 109.47313 * 174.97534 * 1 2 3 20 20 H 1.08999 * 109.47063 * 294.97292 * 1 2 3 21 21 H 0.97007 * 120.00003 * 179.72732 * 7 6 4 22 22 H 1.08998 * 109.47749 * 179.97438 * 12 2 1 23 23 H 1.09005 * 109.55623 * 298.13392 * 14 13 12 24 24 H 1.09000 * 109.56367 * 177.81236 * 14 13 12 25 25 H 1.08994 * 109.57610 * 185.67405 * 15 14 13 26 26 H 1.09002 * 109.67782 * 65.34628 * 15 14 13 27 27 H 1.09003 * 109.55644 * 294.68090 * 16 15 14 28 28 H 1.09006 * 109.55901 * 174.36166 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.5802 -1.6360 -1.1339 6 6 1.7925 -0.1785 -2.4798 7 7 1.2201 1.0001 -2.5938 8 14 2.2876 -1.1284 -4.0101 9 1 1.2110 -2.0866 -4.3679 10 1 2.5004 -0.1809 -5.1336 11 1 3.5449 -1.8729 -3.7455 12 6 2.0401 -0.7213 1.2491 13 8 1.5635 -2.0692 1.2491 14 6 1.9658 -2.8233 2.3966 15 6 1.4657 -2.1130 3.6592 16 6 1.9659 -0.6643 3.6432 17 8 1.5635 -0.0474 2.4165 18 1 -0.3634 0.5898 -0.8416 19 1 -0.3634 -1.0237 -0.0900 20 1 -0.3633 0.4339 0.9316 21 1 1.0549 1.3761 -3.4727 22 1 3.1300 -0.7217 1.2489 23 1 3.0533 -2.8937 2.4240 24 1 1.5351 -3.8233 2.3456 25 1 1.8513 -2.6227 4.5421 26 1 0.3759 -2.1228 3.6786 27 1 3.0533 -0.6530 3.7179 28 1 1.5351 -0.1202 4.4839 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049804614.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:20 Heat of formation + Delta-G solvation = -127.021661 kcal Electronic energy + Delta-G solvation = -12048.707931 eV Core-core repulsion = 9870.524846 eV Total energy + Delta-G solvation = -2178.183084 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -40.77189 -36.49637 -36.20612 -33.66902 -31.79783 -27.31355 -26.75385 -26.28551 -22.46386 -21.38650 -18.76841 -17.61808 -17.30479 -16.70531 -16.46479 -15.68690 -15.58837 -14.51198 -14.22702 -14.11013 -13.61942 -12.92635 -12.79504 -12.61283 -12.34615 -12.21227 -12.03504 -11.87256 -11.22696 -10.99389 -10.81359 -10.49687 -10.41763 -8.13064 -6.22784 1.42914 1.45276 1.54500 2.42449 2.92043 2.95591 3.20979 3.87820 3.88833 4.04307 4.28942 4.46199 4.50182 4.65737 4.85345 4.86561 4.94056 5.13693 5.21244 5.24561 5.55795 5.81520 5.93239 6.13001 6.23884 6.52686 6.85006 7.43319 8.96684 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.065091 B = 0.012006 C = 0.010879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 430.063881 B = 2331.540324 C = 2573.081156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.052 3.948 3 H 0.019 0.981 4 C -0.522 4.522 5 H 0.055 0.945 6 C 0.011 3.989 7 N -0.922 5.922 8 Si 0.962 3.038 9 H -0.275 1.275 10 H -0.281 1.281 11 H -0.267 1.267 12 C 0.268 3.732 13 O -0.401 6.401 14 C 0.037 3.963 15 C -0.181 4.181 16 C 0.041 3.959 17 O -0.417 6.417 18 H 0.039 0.961 19 H 0.028 0.972 20 H 0.029 0.971 21 H 0.263 0.737 22 H 0.040 0.960 23 H 0.056 0.944 24 H 0.109 0.891 25 H 0.115 0.885 26 H 0.070 0.930 27 H 0.059 0.941 28 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.142 -6.032 10.467 12.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.034 3.966 3 H 0.037 0.963 4 C -0.560 4.560 5 H 0.074 0.926 6 C -0.187 4.187 7 N -0.561 5.561 8 Si 0.787 3.213 9 H -0.201 1.201 10 H -0.207 1.207 11 H -0.191 1.191 12 C 0.174 3.826 13 O -0.322 6.322 14 C -0.039 4.039 15 C -0.218 4.218 16 C -0.034 4.034 17 O -0.339 6.339 18 H 0.058 0.942 19 H 0.047 0.953 20 H 0.048 0.952 21 H 0.072 0.928 22 H 0.058 0.942 23 H 0.075 0.925 24 H 0.127 0.873 25 H 0.134 0.866 26 H 0.089 0.911 27 H 0.077 0.923 28 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 1.868 -5.812 10.179 11.870 hybrid contribution 0.423 -0.311 -0.657 0.841 sum 2.291 -6.123 9.522 11.550 Atomic orbital electron populations 1.21334 0.97675 0.98876 0.98307 1.18644 0.94130 0.94360 0.89473 0.96333 1.21210 1.35689 1.07963 0.91186 0.92641 1.25765 0.95262 0.95614 1.02073 1.70078 1.44239 1.17322 1.24467 0.85515 0.78833 0.78390 0.78570 1.20096 1.20657 1.19104 1.23403 0.93765 0.79226 0.86228 1.88228 1.76553 1.24090 1.43305 1.22937 0.99454 0.96205 0.85279 1.22718 1.02493 0.96861 0.99762 1.22935 0.99596 0.94043 0.86869 1.88120 1.77131 1.53280 1.15352 0.94213 0.95276 0.95241 0.92807 0.94244 0.92529 0.87262 0.86634 0.91122 0.92256 0.86778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -5.55 8.67 71.98 0.62 -4.93 15 2 C 0.05 2.87 2.28 -11.54 -0.03 2.84 15 3 H 0.02 1.11 8.12 -2.39 -0.02 1.09 15 4 C -0.52 -30.19 8.18 25.60 0.21 -29.98 15 5 H 0.06 3.17 7.64 -2.91 -0.02 3.15 15 6 C 0.01 0.65 5.28 84.65 0.45 1.10 15 7 N -0.92 -55.28 12.00 21.45 0.26 -55.03 15 8 Si 0.96 44.85 29.54 68.60 2.03 46.88 15 9 H -0.28 -12.58 7.11 99.48 0.71 -11.87 15 10 H -0.28 -12.71 7.11 99.48 0.71 -12.00 15 11 H -0.27 -11.96 7.11 99.48 0.71 -11.25 15 12 C 0.27 12.33 2.84 71.98 0.20 12.54 15 13 O -0.40 -17.51 9.50 -126.22 -1.20 -18.71 15 14 C 0.04 1.13 6.96 72.07 0.50 1.63 15 15 C -0.18 -4.52 6.35 30.77 0.20 -4.33 15 16 C 0.04 1.19 6.96 72.07 0.50 1.69 15 17 O -0.42 -17.29 9.78 -126.22 -1.23 -18.53 15 18 H 0.04 2.25 6.85 -2.38 -0.02 2.23 15 19 H 0.03 1.52 7.84 -2.39 -0.02 1.50 15 20 H 0.03 1.44 7.53 -2.39 -0.02 1.42 15 21 H 0.26 14.88 8.31 -92.70 -0.77 14.11 15 22 H 0.04 1.80 8.14 -2.39 -0.02 1.78 15 23 H 0.06 1.55 8.14 -2.38 -0.02 1.54 15 24 H 0.11 2.80 8.14 -2.39 -0.02 2.78 15 25 H 0.12 1.94 8.14 -2.39 -0.02 1.92 15 26 H 0.07 1.89 8.14 -2.39 -0.02 1.87 15 27 H 0.06 1.52 8.14 -2.39 -0.02 1.50 15 28 H 0.11 2.64 8.14 -2.38 -0.02 2.62 15 Total: -1.00 -66.07 232.95 3.63 -62.44 By element: Atomic # 1 Polarization: 1.27 SS G_CDS: 1.12 Total: 2.39 kcal Atomic # 6 Polarization: -22.10 SS G_CDS: 2.66 Total: -19.44 kcal Atomic # 7 Polarization: -55.28 SS G_CDS: 0.26 Total: -55.03 kcal Atomic # 8 Polarization: -34.80 SS G_CDS: -2.43 Total: -37.24 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.88 kcal Total: -66.07 3.63 -62.44 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049804614.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.583 kcal (2) G-P(sol) polarization free energy of solvation -66.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds