Wall clock time and date at job start Mon Mar 30 2020 01:45:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31322 * 1 3 3 Si 1.86803 * 120.00299 * 2 1 4 4 H 1.48500 * 109.46954 * 269.99580 * 3 2 1 5 5 H 1.48493 * 109.46868 * 29.99833 * 3 2 1 6 6 H 1.48499 * 109.47152 * 149.99661 * 3 2 1 7 7 C 1.38946 * 119.99841 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99771 * 179.97438 * 7 2 1 9 9 N 1.37559 * 119.99861 * 0.02562 * 7 2 1 10 10 C 1.37300 * 126.51402 * 0.29502 * 9 7 2 11 11 C 1.34632 * 106.83326 * 180.15979 * 10 9 7 12 12 N 1.34250 * 108.27701 * 359.58800 * 11 10 9 13 13 C 1.30483 * 109.40304 * 0.26454 * 12 11 10 14 14 C 1.50695 * 125.74379 * 179.97438 * 13 12 11 15 15 Cl 1.80308 * 109.47354 * 90.02351 * 14 13 12 16 16 H 0.96999 * 119.99902 * 0.02562 * 1 2 3 17 17 H 1.08002 * 126.58217 * 0.02562 * 10 9 7 18 18 H 1.08002 * 125.86394 * 179.85603 * 11 10 9 19 19 H 1.09005 * 109.47380 * 210.02196 * 14 13 12 20 20 H 1.09001 * 109.47237 * 330.02523 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3132 0.0000 0.0000 3 14 2.2473 1.6177 0.0000 4 1 2.4949 2.0463 -1.4001 5 1 1.4448 2.6526 0.7000 6 1 3.5448 1.4401 0.7001 7 6 2.0079 -1.2033 0.0005 8 1 3.0879 -1.2033 0.0001 9 7 1.3201 -2.3946 0.0005 10 6 -0.0441 -2.5503 -0.0056 11 6 -0.2853 -3.8748 0.0005 12 7 0.8934 -4.5175 0.0010 13 6 1.8631 -3.6444 0.0011 14 6 3.3357 -3.9644 0.0021 15 17 3.9242 -4.0923 -1.6974 16 1 -0.4850 0.8400 -0.0004 17 1 -0.7819 -1.7616 -0.0118 18 1 -1.2598 -4.3405 0.0003 19 1 3.8794 -3.1718 0.5162 20 1 3.5014 -4.9112 0.5162 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000051015787.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:18 Heat of formation + Delta-G solvation = 21.067113 kcal Electronic energy + Delta-G solvation = -9337.425910 eV Core-core repulsion = 7367.000163 eV Total energy + Delta-G solvation = -1970.425747 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 186.025 amu Computer time = 0.08 seconds Orbital eigenvalues (eV) -42.31519 -36.81232 -35.96868 -32.93895 -31.70780 -27.69122 -26.75354 -22.25171 -21.01848 -19.49105 -17.50670 -16.15439 -16.11207 -15.25546 -14.80418 -14.30655 -13.93584 -13.89734 -13.60174 -12.97002 -12.80395 -12.14377 -11.61511 -11.50647 -11.29260 -10.53048 -10.37176 -8.88601 -8.65066 -6.53101 0.98668 1.37968 1.42458 1.54158 2.00942 2.09851 2.63154 3.01871 3.03016 3.73357 4.21767 4.40798 4.82615 4.93130 5.06217 5.44110 5.57523 6.24743 6.43375 6.78253 7.39689 7.67309 8.31506 Molecular weight = 186.03amu Principal moments of inertia in cm(-1) A = 0.039878 B = 0.016838 C = 0.012478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 701.978674 B = 1662.553950 C = 2243.437822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.865 5.865 2 C 0.001 3.999 3 Si 1.019 2.981 4 H -0.266 1.266 5 H -0.269 1.269 6 H -0.250 1.250 7 C -0.361 4.361 8 H 0.124 0.876 9 N -0.265 5.265 10 C -0.079 4.079 11 C -0.101 4.101 12 N -0.519 5.519 13 C 0.056 3.944 14 C 0.090 3.910 15 Cl -0.198 7.198 16 H 0.288 0.712 17 H 0.188 0.812 18 H 0.169 0.831 19 H 0.112 0.888 20 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.229 1.269 0.736 5.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.496 5.496 2 C -0.206 4.206 3 Si 0.839 3.161 4 H -0.191 1.191 5 H -0.194 1.194 6 H -0.173 1.173 7 C -0.490 4.490 8 H 0.142 0.858 9 N 0.069 4.931 10 C -0.223 4.223 11 C -0.255 4.255 12 N -0.241 5.241 13 C -0.198 4.198 14 C 0.026 3.974 15 Cl -0.173 7.173 16 H 0.099 0.901 17 H 0.205 0.795 18 H 0.186 0.814 19 H 0.130 0.870 20 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 5.381 0.673 0.625 5.458 hybrid contribution -0.306 1.426 -0.168 1.468 sum 5.075 2.099 0.457 5.511 Atomic orbital electron populations 1.69793 1.08030 1.30098 1.41701 1.26667 0.96597 1.04171 0.93189 0.84545 0.78302 0.74033 0.79254 1.19137 1.19391 1.17333 1.20562 0.93795 0.81911 1.52699 0.85791 1.41912 1.05988 1.05913 1.39252 1.23782 0.86102 0.98827 1.13618 1.22279 0.96702 0.91352 1.15150 1.69765 0.98741 1.33418 1.22187 1.22975 0.96304 0.81098 1.19441 1.22151 0.86633 1.05705 0.82875 1.98689 1.89501 1.98952 1.30116 0.90141 0.79533 0.81366 0.86951 0.85582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -43.43 10.19 21.66 0.22 -43.21 14 2 C 0.00 0.04 5.48 84.94 0.47 0.50 14 3 Si 1.02 36.42 29.55 68.60 2.03 38.44 14 4 H -0.27 -9.38 7.11 99.48 0.71 -8.67 14 5 H -0.27 -9.29 7.11 99.48 0.71 -8.59 14 6 H -0.25 -8.36 7.11 99.48 0.71 -7.65 14 7 C -0.36 -18.12 9.92 83.96 0.83 -17.28 14 8 H 0.12 5.70 7.07 -2.91 -0.02 5.68 14 9 N -0.26 -13.98 2.93 -340.17 -1.00 -14.98 14 10 C -0.08 -4.24 10.40 83.01 0.86 -3.38 14 11 C -0.10 -5.08 11.85 83.50 0.99 -4.09 14 12 N -0.52 -26.47 11.24 -187.20 -2.11 -28.57 14 13 C 0.06 2.72 7.28 137.74 1.00 3.72 14 14 C 0.09 3.42 6.90 71.23 0.49 3.91 14 15 Cl -0.20 -7.48 29.13 -2.72 -0.08 -7.56 14 16 H 0.29 13.16 8.31 -92.71 -0.77 12.39 14 17 H 0.19 10.13 5.60 -2.91 -0.02 10.11 14 18 H 0.17 7.27 8.06 -2.91 -0.02 7.25 14 19 H 0.11 3.85 7.37 -2.38 -0.02 3.84 14 20 H 0.13 4.14 8.14 -2.39 -0.02 4.12 14 Total: -1.00 -58.97 200.73 4.97 -54.00 By element: Atomic # 1 Polarization: 17.23 SS G_CDS: 1.25 Total: 18.48 kcal Atomic # 6 Polarization: -21.26 SS G_CDS: 4.65 Total: -16.62 kcal Atomic # 7 Polarization: -83.87 SS G_CDS: -2.88 Total: -86.75 kcal Atomic # 14 Polarization: 36.42 SS G_CDS: 2.03 Total: 38.44 kcal Atomic # 17 Polarization: -7.48 SS G_CDS: -0.08 Total: -7.56 kcal Total: -58.97 4.97 -54.00 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051015787.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.067 kcal (2) G-P(sol) polarization free energy of solvation -58.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.000 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.08 seconds