Wall clock time and date at job start Mon Mar 30 2020 02:03:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31577 * 1 3 3 Si 1.86800 * 119.99877 * 2 1 4 4 H 1.48507 * 109.47042 * 270.00283 * 3 2 1 5 5 H 1.48504 * 109.47225 * 29.99889 * 3 2 1 6 6 H 1.48498 * 109.47352 * 150.00101 * 3 2 1 7 7 C 1.38633 * 120.00463 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99837 * 0.02562 * 7 2 1 9 9 O 1.34923 * 120.00292 * 179.97438 * 7 2 1 10 10 C 1.42898 * 117.00206 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47643 * 180.02562 * 10 9 7 12 12 C 1.53175 * 109.54388 * 294.56185 * 11 10 9 13 13 C 1.53094 * 109.16661 * 183.14993 * 12 11 10 14 14 O 1.42898 * 109.41211 * 57.60371 * 13 12 11 15 15 C 1.42897 * 114.10001 * 298.84343 * 14 13 12 16 16 C 1.53089 * 109.41656 * 61.16248 * 15 14 13 17 17 H 0.96993 * 120.00746 * 359.97438 * 1 2 3 18 18 H 1.09002 * 109.47116 * 60.00419 * 10 9 7 19 19 H 1.09007 * 109.47449 * 300.00158 * 10 9 7 20 20 H 1.09004 * 109.61242 * 54.77604 * 11 10 9 21 21 H 1.09004 * 109.52259 * 303.05258 * 12 11 10 22 22 H 1.09006 * 109.52330 * 63.24092 * 12 11 10 23 23 H 1.09006 * 109.47665 * 297.62062 * 13 12 11 24 24 H 1.08993 * 109.47955 * 177.58818 * 13 12 11 25 25 H 1.09002 * 109.48425 * 301.17758 * 15 14 13 26 26 H 1.09001 * 109.49443 * 181.15303 * 15 14 13 27 27 H 1.08997 * 109.52675 * 182.48845 * 16 15 14 28 28 H 1.08995 * 109.52428 * 62.29514 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2497 1.6178 0.0000 4 1 2.4972 2.0465 -1.4001 5 1 1.4472 2.6527 0.7000 6 1 3.5473 1.4403 0.7000 7 6 2.0090 -1.2005 -0.0005 8 1 1.4691 -2.1359 -0.0014 9 8 3.3583 -1.2005 -0.0011 10 6 4.0071 -2.4737 -0.0010 11 6 5.5239 -2.2733 -0.0010 12 6 5.9533 -1.6113 -1.3139 13 6 7.4790 -1.4865 -1.3384 14 8 8.0639 -2.7814 -1.1861 15 6 7.7357 -3.4288 0.0447 16 6 6.2204 -3.6317 0.1248 17 1 -0.4851 0.8399 0.0004 18 1 3.7140 -3.0309 -0.8908 19 1 3.7146 -3.0306 0.8892 20 1 5.8090 -1.6382 0.8378 21 1 5.6243 -2.2223 -2.1546 22 1 5.5055 -0.6200 -1.3856 23 1 7.8041 -0.8423 -0.5214 24 1 7.7931 -1.0552 -2.2888 25 1 8.0642 -2.8101 0.8799 26 1 8.2349 -4.3967 0.0911 27 1 5.9636 -4.0853 1.0820 28 1 5.8968 -4.2834 -0.6867 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000052154155.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:48 Heat of formation + Delta-G solvation = -98.065530 kcal Electronic energy + Delta-G solvation = -11654.444434 eV Core-core repulsion = 9477.516981 eV Total energy + Delta-G solvation = -2176.927452 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -39.21501 -36.57898 -33.76073 -31.71580 -30.91912 -27.20368 -24.15758 -23.31098 -21.97511 -19.77759 -17.55004 -15.96517 -15.86883 -15.52319 -14.76884 -14.50920 -13.90772 -13.23083 -13.11292 -12.72318 -12.12256 -11.77047 -11.51704 -11.16503 -10.93274 -10.60412 -10.43238 -10.10936 -9.95250 -9.52439 -9.31754 -9.23456 -8.15425 -5.98628 -3.65827 3.41500 3.44326 3.60445 3.98026 4.56642 4.77062 4.99402 5.08949 5.22039 5.31932 5.34952 5.52963 5.65672 5.69282 5.85325 5.93008 6.05534 6.13997 6.27198 6.44085 6.52268 6.58414 6.75177 7.29434 7.93618 8.37705 9.41504 9.97713 11.14449 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.066051 B = 0.010193 C = 0.009229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 423.815668 B = 2746.438282 C = 3033.025178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.042 3.958 3 Si 0.907 3.093 4 H -0.281 1.281 5 H -0.291 1.291 6 H -0.265 1.265 7 C -0.356 4.356 8 H 0.077 0.923 9 O -0.333 6.333 10 C 0.091 3.909 11 C -0.089 4.089 12 C -0.146 4.146 13 C 0.060 3.940 14 O -0.389 6.389 15 C 0.064 3.936 16 C -0.149 4.149 17 H 0.269 0.731 18 H 0.030 0.970 19 H 0.029 0.971 20 H 0.074 0.926 21 H 0.069 0.931 22 H 0.083 0.917 23 H 0.048 0.952 24 H 0.090 0.910 25 H 0.048 0.952 26 H 0.090 0.910 27 H 0.073 0.927 28 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.143 -4.243 -0.369 14.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.154 4.154 3 Si 0.735 3.265 4 H -0.208 1.208 5 H -0.218 1.218 6 H -0.190 1.190 7 C -0.434 4.434 8 H 0.095 0.905 9 O -0.249 6.249 10 C 0.013 3.987 11 C -0.107 4.107 12 C -0.184 4.184 13 C -0.016 4.016 14 O -0.308 6.308 15 C -0.013 4.013 16 C -0.186 4.186 17 H 0.079 0.921 18 H 0.048 0.952 19 H 0.047 0.953 20 H 0.092 0.908 21 H 0.087 0.913 22 H 0.101 0.899 23 H 0.066 0.934 24 H 0.109 0.891 25 H 0.066 0.934 26 H 0.108 0.892 27 H 0.091 0.909 28 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 14.252 -4.051 -0.505 14.825 hybrid contribution -0.166 0.650 0.231 0.709 sum 14.086 -3.401 -0.273 14.494 Atomic orbital electron populations 1.69683 1.05355 1.27166 1.53858 1.24316 0.94854 0.98207 0.98049 0.86157 0.79965 0.82292 0.78130 1.20754 1.21765 1.18979 1.20379 0.78603 0.95046 1.49370 0.90502 1.85184 1.20360 1.25342 1.94020 1.22028 0.90164 0.87820 0.98667 1.21160 0.95316 0.95944 0.98288 1.22164 0.95207 1.02951 0.98038 1.22643 0.93225 0.84277 1.01498 1.87872 1.72221 1.31760 1.38910 1.22530 0.94750 0.97407 0.86627 1.22166 0.95779 0.97877 1.02825 0.92148 0.95228 0.95289 0.90787 0.91256 0.89855 0.93395 0.89143 0.93381 0.89193 0.90882 0.90994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.75 13.96 55.48 0.77 -27.98 15 2 C 0.04 1.28 5.49 -17.51 -0.10 1.19 15 3 Si 0.91 23.39 28.62 -169.99 -4.86 18.53 15 4 H -0.28 -7.11 7.11 56.52 0.40 -6.70 15 5 H -0.29 -7.32 7.11 56.52 0.40 -6.92 15 6 H -0.27 -6.77 7.11 56.52 0.40 -6.37 15 7 C -0.36 -10.68 10.35 30.88 0.32 -10.36 15 8 H 0.08 2.41 8.00 -52.48 -0.42 1.99 15 9 O -0.33 -8.85 8.23 -16.49 -0.14 -8.99 15 10 C 0.09 1.92 5.40 37.16 0.20 2.12 15 11 C -0.09 -1.50 2.51 -90.44 -0.23 -1.73 15 12 C -0.15 -2.38 5.29 -26.59 -0.14 -2.52 15 13 C 0.06 0.82 6.84 37.21 0.25 1.08 15 14 O -0.39 -5.58 10.76 -35.23 -0.38 -5.96 15 15 C 0.06 0.78 6.84 37.20 0.25 1.03 15 16 C -0.15 -2.01 5.42 -26.59 -0.14 -2.16 15 17 H 0.27 7.88 8.31 -40.82 -0.34 7.54 15 18 H 0.03 0.62 8.14 -51.93 -0.42 0.20 15 19 H 0.03 0.60 8.14 -51.92 -0.42 0.18 15 20 H 0.07 1.28 8.14 -51.93 -0.42 0.85 15 21 H 0.07 1.13 8.14 -51.93 -0.42 0.71 15 22 H 0.08 1.50 7.93 -51.93 -0.41 1.08 15 23 H 0.05 0.62 8.14 -51.93 -0.42 0.20 15 24 H 0.09 1.09 8.14 -51.93 -0.42 0.67 15 25 H 0.05 0.55 8.14 -51.93 -0.42 0.13 15 26 H 0.09 0.91 8.14 -51.93 -0.42 0.48 15 27 H 0.07 0.89 8.14 -51.93 -0.42 0.47 15 28 H 0.07 0.98 8.14 -51.93 -0.42 0.56 15 LS Contribution 236.72 15.07 3.57 3.57 Total: -1.00 -32.30 236.72 -4.81 -37.11 By element: Atomic # 1 Polarization: -0.74 SS G_CDS: -4.19 Total: -4.94 kcal Atomic # 6 Polarization: -11.77 SS G_CDS: 0.42 Total: -11.34 kcal Atomic # 7 Polarization: -28.75 SS G_CDS: 0.77 Total: -27.98 kcal Atomic # 8 Polarization: -14.43 SS G_CDS: -0.51 Total: -14.95 kcal Atomic # 14 Polarization: 23.39 SS G_CDS: -4.86 Total: 18.53 kcal Total LS contribution 3.57 Total: 3.57 kcal Total: -32.30 -4.81 -37.11 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052154155.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.955 kcal (2) G-P(sol) polarization free energy of solvation -32.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds