Wall clock time and date at job start Mon Mar 30 2020 01:52:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30526 * 1 3 3 Si 1.86797 * 119.99659 * 2 1 4 4 H 1.48502 * 109.47118 * 240.00204 * 3 2 1 5 5 H 1.48500 * 109.47743 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47161 * 120.00532 * 3 2 1 7 7 C 1.40451 * 119.99981 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00047 * 179.97438 * 7 2 1 9 9 C 1.41025 * 120.00196 * 359.97438 * 7 2 1 10 10 O 1.21431 * 119.99951 * 359.97438 * 9 7 2 11 11 C 1.50699 * 120.00079 * 180.02562 * 9 7 2 12 12 H 1.09001 * 109.52512 * 45.13214 * 11 9 7 13 13 C 1.53144 * 109.52463 * 284.99822 * 11 9 7 14 14 O 1.43070 * 109.14777 * 184.72306 * 13 11 9 15 15 C 1.43074 * 113.59967 * 57.95234 * 14 13 11 16 16 C 1.53144 * 109.14923 * 302.04685 * 15 14 13 17 17 O 1.43080 * 109.57676 * 165.22573 * 11 9 7 18 18 H 0.97004 * 119.99747 * 359.97438 * 1 2 3 19 19 H 1.08992 * 109.52177 * 64.82229 * 13 11 9 20 20 H 1.08998 * 109.57368 * 304.65224 * 13 11 9 21 21 H 1.08998 * 109.52742 * 182.14795 * 15 14 13 22 22 H 1.08994 * 109.57534 * 61.97908 * 15 14 13 23 23 H 1.09002 * 109.52444 * 175.21238 * 16 15 14 24 24 H 1.08995 * 109.52642 * 295.34196 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3053 0.0000 0.0000 3 14 2.2391 1.6178 0.0000 4 1 3.0929 1.6965 -1.2125 5 1 1.2742 2.7465 0.0006 6 1 3.0930 1.6964 1.2125 7 6 2.0075 -1.2163 -0.0005 8 1 3.0876 -1.2164 -0.0010 9 6 1.3024 -2.4377 -0.0005 10 8 0.0881 -2.4377 0.0004 11 6 2.0559 -3.7428 -0.0005 12 1 2.8658 -3.6959 0.7276 13 6 2.6353 -3.9992 -1.3947 14 8 3.2537 -5.2893 -1.4159 15 6 2.3643 -6.3564 -1.0737 16 6 1.7849 -6.1000 0.3205 17 8 1.1668 -4.8097 0.3432 18 1 -0.4850 0.8401 0.0004 19 1 3.3776 -3.2356 -1.6268 20 1 1.8353 -3.9666 -2.1343 21 1 2.9103 -7.2998 -1.0733 22 1 1.5544 -6.4045 -1.8016 23 1 1.0426 -6.8637 0.5527 24 1 2.5854 -6.1334 1.0595 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000055301935.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:31 Heat of formation + Delta-G solvation = -133.846535 kcal Electronic energy + Delta-G solvation = -11617.253036 eV Core-core repulsion = 9302.940908 eV Total energy + Delta-G solvation = -2314.312128 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 186.072 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -39.30000 -36.54416 -35.17424 -32.66965 -30.95953 -28.08257 -26.23098 -24.10914 -21.35675 -19.54603 -16.69310 -16.05598 -15.95332 -15.26069 -15.21698 -14.65841 -14.17440 -12.98391 -12.89744 -12.45292 -11.99258 -11.53057 -11.36564 -11.11722 -10.70075 -10.49266 -10.41362 -10.12578 -9.78828 -8.98155 -8.52559 -7.40806 -6.29701 -4.98340 3.04903 3.11394 3.13443 3.96418 4.06644 4.24405 4.47122 5.09398 5.34878 5.42279 5.49242 5.74944 5.92689 5.94035 6.05651 6.13888 6.55515 6.59994 7.19498 7.43246 7.76661 7.98296 8.76083 8.78299 10.29060 10.50360 Molecular weight = 186.07amu Principal moments of inertia in cm(-1) A = 0.074051 B = 0.011523 C = 0.010510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 378.029033 B = 2429.237335 C = 2663.490558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.738 5.738 2 C 0.083 3.917 3 Si 0.910 3.090 4 H -0.264 1.264 5 H -0.278 1.278 6 H -0.264 1.264 7 C -0.532 4.532 8 H 0.072 0.928 9 C 0.373 3.627 10 O -0.521 6.521 11 C 0.014 3.986 12 H 0.064 0.936 13 C 0.046 3.954 14 O -0.390 6.390 15 C 0.025 3.975 16 C 0.019 3.981 17 O -0.356 6.356 18 H 0.276 0.724 19 H 0.108 0.892 20 H 0.058 0.942 21 H 0.094 0.906 22 H 0.056 0.944 23 H 0.094 0.906 24 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.575 -5.480 -1.241 7.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.366 5.366 2 C -0.141 4.141 3 Si 0.734 3.266 4 H -0.189 1.189 5 H -0.203 1.203 6 H -0.189 1.189 7 C -0.564 4.564 8 H 0.090 0.910 9 C 0.265 3.735 10 O -0.408 6.408 11 C -0.045 4.045 12 H 0.082 0.918 13 C -0.031 4.031 14 O -0.309 6.309 15 C -0.052 4.052 16 C -0.059 4.059 17 O -0.274 6.274 18 H 0.087 0.913 19 H 0.126 0.874 20 H 0.076 0.924 21 H 0.113 0.887 22 H 0.074 0.926 23 H 0.112 0.888 24 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 4.789 -5.429 -1.242 7.345 hybrid contribution 0.664 0.620 0.041 0.910 sum 5.453 -4.808 -1.202 7.369 Atomic orbital electron populations 1.69949 1.07556 1.28320 1.30820 1.25987 0.94638 1.00956 0.92529 0.86371 0.80002 0.80319 0.79888 1.18854 1.20252 1.18892 1.20597 0.94872 0.91222 1.49700 0.90962 1.19257 0.89175 0.85650 0.79458 1.90430 1.15210 1.87825 1.47305 1.23664 0.94428 0.91223 0.95157 0.91777 1.23122 0.98607 0.84177 0.97181 1.87997 1.37026 1.15711 1.90140 1.23157 0.94428 0.90992 0.96593 1.23153 0.98368 0.88103 0.96269 1.88296 1.36067 1.13329 1.89753 0.91335 0.87377 0.92394 0.88750 0.92596 0.88756 0.93081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -21.39 11.72 55.57 0.65 -20.74 14 2 C 0.08 2.22 5.50 -17.27 -0.10 2.13 14 3 Si 0.91 19.21 29.56 -169.99 -5.03 14.18 14 4 H -0.26 -5.39 7.11 56.52 0.40 -4.99 14 5 H -0.28 -5.70 7.11 56.52 0.40 -5.29 14 6 H -0.26 -5.44 7.11 56.52 0.40 -5.04 14 7 C -0.53 -14.65 9.17 -37.69 -0.35 -14.99 14 8 H 0.07 1.79 7.85 -52.48 -0.41 1.38 14 9 C 0.37 10.71 6.23 -33.25 -0.21 10.51 14 10 O -0.52 -17.20 15.09 -13.94 -0.21 -17.41 14 11 C 0.01 0.34 3.13 -27.81 -0.09 0.25 14 12 H 0.06 1.45 8.14 -51.93 -0.42 1.03 14 13 C 0.05 0.95 6.28 37.23 0.23 1.18 14 14 O -0.39 -7.35 10.85 -48.76 -0.53 -7.88 14 15 C 0.03 0.40 7.05 37.23 0.26 0.67 14 16 C 0.02 0.32 7.05 37.23 0.26 0.59 14 17 O -0.36 -8.42 10.08 -62.27 -0.63 -9.04 14 18 H 0.28 7.15 8.29 -40.82 -0.34 6.81 14 19 H 0.11 2.09 8.14 -51.93 -0.42 1.66 14 20 H 0.06 1.24 8.14 -51.93 -0.42 0.82 14 21 H 0.09 1.16 8.14 -51.93 -0.42 0.73 14 22 H 0.06 0.88 8.14 -51.93 -0.42 0.46 14 23 H 0.09 1.35 8.14 -51.93 -0.42 0.93 14 24 H 0.05 0.82 8.14 -51.93 -0.42 0.40 14 LS Contribution 216.16 15.07 3.26 3.26 Total: -1.00 -33.43 216.16 -4.96 -38.40 By element: Atomic # 1 Polarization: 1.41 SS G_CDS: -2.51 Total: -1.10 kcal Atomic # 6 Polarization: 0.30 SS G_CDS: 0.02 Total: 0.33 kcal Atomic # 7 Polarization: -21.39 SS G_CDS: 0.65 Total: -20.74 kcal Atomic # 8 Polarization: -32.97 SS G_CDS: -1.37 Total: -34.33 kcal Atomic # 14 Polarization: 19.21 SS G_CDS: -5.03 Total: 14.18 kcal Total LS contribution 3.26 Total: 3.26 kcal Total: -33.43 -4.96 -38.40 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055301935.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.448 kcal (2) G-P(sol) polarization free energy of solvation -33.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds