Wall clock time and date at job start Mon Mar 30 2020 01:52:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30526 * 1 3 3 Si 1.86797 * 119.99659 * 2 1 4 4 H 1.48502 * 109.47118 * 240.00204 * 3 2 1 5 5 H 1.48500 * 109.47743 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47161 * 120.00532 * 3 2 1 7 7 C 1.40451 * 119.99981 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00047 * 179.97438 * 7 2 1 9 9 C 1.41025 * 120.00196 * 359.97438 * 7 2 1 10 10 O 1.21431 * 119.99951 * 359.97438 * 9 7 2 11 11 C 1.50699 * 120.00079 * 180.02562 * 9 7 2 12 12 H 1.09001 * 109.52512 * 45.13214 * 11 9 7 13 13 C 1.53144 * 109.52463 * 284.99822 * 11 9 7 14 14 O 1.43070 * 109.14777 * 184.72306 * 13 11 9 15 15 C 1.43074 * 113.59967 * 57.95234 * 14 13 11 16 16 C 1.53144 * 109.14923 * 302.04685 * 15 14 13 17 17 O 1.43080 * 109.57676 * 165.22573 * 11 9 7 18 18 H 0.97004 * 119.99747 * 359.97438 * 1 2 3 19 19 H 1.08992 * 109.52177 * 64.82229 * 13 11 9 20 20 H 1.08998 * 109.57368 * 304.65224 * 13 11 9 21 21 H 1.08998 * 109.52742 * 182.14795 * 15 14 13 22 22 H 1.08994 * 109.57534 * 61.97908 * 15 14 13 23 23 H 1.09002 * 109.52444 * 175.21238 * 16 15 14 24 24 H 1.08995 * 109.52642 * 295.34196 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3053 0.0000 0.0000 3 14 2.2391 1.6178 0.0000 4 1 3.0929 1.6965 -1.2125 5 1 1.2742 2.7465 0.0006 6 1 3.0930 1.6964 1.2125 7 6 2.0075 -1.2163 -0.0005 8 1 3.0876 -1.2164 -0.0010 9 6 1.3024 -2.4377 -0.0005 10 8 0.0881 -2.4377 0.0004 11 6 2.0559 -3.7428 -0.0005 12 1 2.8658 -3.6959 0.7276 13 6 2.6353 -3.9992 -1.3947 14 8 3.2537 -5.2893 -1.4159 15 6 2.3643 -6.3564 -1.0737 16 6 1.7849 -6.1000 0.3205 17 8 1.1668 -4.8097 0.3432 18 1 -0.4850 0.8401 0.0004 19 1 3.3776 -3.2356 -1.6268 20 1 1.8353 -3.9666 -2.1343 21 1 2.9103 -7.2998 -1.0733 22 1 1.5544 -6.4045 -1.8016 23 1 1.0426 -6.8637 0.5527 24 1 2.5854 -6.1334 1.0595 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000055301935.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:31 Heat of formation + Delta-G solvation = -158.425345 kcal Electronic energy + Delta-G solvation = -11618.318853 eV Core-core repulsion = 9302.940908 eV Total energy + Delta-G solvation = -2315.377945 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 186.072 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -40.93124 -38.59307 -36.83794 -34.78181 -32.63367 -29.83984 -28.12632 -25.74124 -22.98838 -21.44621 -18.67123 -17.74967 -17.62408 -17.07150 -16.76325 -16.21247 -15.87937 -14.87176 -14.57879 -14.17604 -13.92112 -13.29121 -13.07695 -12.71285 -12.56328 -12.32230 -12.08703 -11.69873 -11.39495 -10.98906 -10.15441 -9.55371 -8.35000 -7.17790 1.38023 1.39807 1.55790 2.09190 2.20160 2.75784 2.85186 3.25913 3.79977 4.01628 4.12000 4.16208 4.25175 4.47520 4.58639 4.67747 4.85139 4.92248 5.15640 5.89694 5.94798 6.13760 6.65105 6.73663 8.20443 8.45533 Molecular weight = 186.07amu Principal moments of inertia in cm(-1) A = 0.074051 B = 0.011523 C = 0.010510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 378.029033 B = 2429.237335 C = 2663.490558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.789 5.789 2 C 0.025 3.975 3 Si 1.001 2.999 4 H -0.248 1.248 5 H -0.270 1.270 6 H -0.252 1.252 7 C -0.553 4.553 8 H 0.096 0.904 9 C 0.345 3.655 10 O -0.583 6.583 11 C 0.020 3.980 12 H 0.074 0.926 13 C 0.058 3.942 14 O -0.389 6.389 15 C 0.021 3.979 16 C 0.009 3.991 17 O -0.396 6.396 18 H 0.284 0.716 19 H 0.121 0.879 20 H 0.042 0.958 21 H 0.141 0.859 22 H 0.055 0.945 23 H 0.123 0.877 24 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.620 -5.420 -1.398 9.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.418 5.418 2 C -0.194 4.194 3 Si 0.819 3.181 4 H -0.171 1.171 5 H -0.195 1.195 6 H -0.176 1.176 7 C -0.584 4.584 8 H 0.114 0.886 9 C 0.242 3.758 10 O -0.474 6.474 11 C -0.039 4.039 12 H 0.092 0.908 13 C -0.019 4.019 14 O -0.309 6.309 15 C -0.055 4.055 16 C -0.067 4.067 17 O -0.316 6.316 18 H 0.094 0.906 19 H 0.139 0.861 20 H 0.060 0.940 21 H 0.159 0.841 22 H 0.073 0.927 23 H 0.141 0.859 24 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 6.867 -5.409 -1.401 8.853 hybrid contribution -0.001 0.481 0.122 0.496 sum 6.866 -4.928 -1.279 8.548 Atomic orbital electron populations 1.70102 1.10119 1.30180 1.31365 1.27324 0.95486 1.05683 0.90950 0.85018 0.78395 0.73906 0.80798 1.17146 1.19487 1.17551 1.21175 0.96232 0.91777 1.49179 0.88553 1.20051 0.88868 0.88364 0.78522 1.90379 1.17530 1.89214 1.50320 1.23331 0.93647 0.89620 0.97255 0.90849 1.22888 0.98373 0.85863 0.94742 1.87995 1.37470 1.15299 1.90088 1.23453 0.94842 0.91700 0.95518 1.23548 0.99650 0.85808 0.97682 1.88222 1.37653 1.15579 1.90143 0.90562 0.86105 0.93971 0.84144 0.92676 0.85944 0.91706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -46.81 11.72 21.91 0.26 -46.56 14 2 C 0.02 1.34 5.50 85.43 0.47 1.81 14 3 Si 1.00 38.56 29.56 68.60 2.03 40.59 14 4 H -0.25 -8.87 7.11 99.48 0.71 -8.16 14 5 H -0.27 -9.99 7.11 99.48 0.71 -9.29 14 6 H -0.25 -9.14 7.11 99.48 0.71 -8.43 14 7 C -0.55 -30.56 9.17 23.49 0.22 -30.35 14 8 H 0.10 4.67 7.85 -2.91 -0.02 4.65 14 9 C 0.34 20.38 6.23 26.37 0.16 20.55 14 10 O -0.58 -40.21 15.09 15.02 0.23 -39.98 14 11 C 0.02 0.97 3.13 29.90 0.09 1.07 14 12 H 0.07 3.29 8.14 -2.39 -0.02 3.27 14 13 C 0.06 2.38 6.28 72.03 0.45 2.83 14 14 O -0.39 -13.81 10.85 -136.04 -1.48 -15.28 14 15 C 0.02 0.61 7.05 72.03 0.51 1.12 14 16 C 0.01 0.31 7.05 72.03 0.51 0.82 14 17 O -0.40 -18.82 10.08 -123.12 -1.24 -20.06 14 18 H 0.28 15.02 8.29 -92.71 -0.77 14.25 14 19 H 0.12 4.52 8.14 -2.39 -0.02 4.51 14 20 H 0.04 1.83 8.14 -2.39 -0.02 1.81 14 21 H 0.14 2.81 8.14 -2.39 -0.02 2.79 14 22 H 0.05 1.62 8.14 -2.39 -0.02 1.60 14 23 H 0.12 3.22 8.14 -2.39 -0.02 3.20 14 24 H 0.06 1.92 8.14 -2.39 -0.02 1.90 14 Total: -1.00 -74.76 216.16 3.40 -71.36 By element: Atomic # 1 Polarization: 10.90 SS G_CDS: 1.19 Total: 12.10 kcal Atomic # 6 Polarization: -4.57 SS G_CDS: 2.41 Total: -2.15 kcal Atomic # 7 Polarization: -46.81 SS G_CDS: 0.26 Total: -46.56 kcal Atomic # 8 Polarization: -72.84 SS G_CDS: -2.49 Total: -75.33 kcal Atomic # 14 Polarization: 38.56 SS G_CDS: 2.03 Total: 40.59 kcal Total: -74.76 3.40 -71.36 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055301935.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.067 kcal (2) G-P(sol) polarization free energy of solvation -74.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds