Wall clock time and date at job start Mon Mar 30 2020 01:56:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86801 * 120.00102 * 2 1 4 4 H 1.48501 * 109.47405 * 270.00308 * 3 2 1 5 5 H 1.48505 * 109.47032 * 30.00068 * 3 2 1 6 6 H 1.48497 * 109.47409 * 150.00077 * 3 2 1 7 7 C 1.38795 * 120.00234 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00171 * 179.97438 * 7 2 1 9 9 S 1.76198 * 119.99810 * 359.97438 * 7 2 1 10 10 C 1.81002 * 100.00092 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47326 * 179.97438 * 10 9 7 12 12 C 1.54267 * 110.03373 * 292.91162 * 11 10 9 13 13 C 1.54968 * 104.16137 * 217.13581 * 12 11 10 14 14 C 1.54884 * 102.77441 * 37.88396 * 13 12 11 15 15 C 1.53874 * 110.03593 * 175.69082 * 11 10 9 16 16 H 0.97005 * 119.99806 * 359.97438 * 1 2 3 17 17 H 1.09002 * 109.47154 * 300.00093 * 10 9 7 18 18 H 1.09001 * 109.47171 * 60.00111 * 10 9 7 19 19 H 1.09004 * 110.01939 * 54.29550 * 11 10 9 20 20 H 1.09001 * 110.48609 * 335.77840 * 12 11 10 21 21 H 1.08999 * 110.49311 * 98.42344 * 12 11 10 22 22 H 1.08997 * 110.72048 * 279.57487 * 13 12 11 23 23 H 1.08993 * 110.92252 * 156.29196 * 13 12 11 24 24 H 1.09009 * 110.48779 * 203.40596 * 14 13 12 25 25 H 1.09001 * 110.59973 * 80.82109 * 14 13 12 26 26 H 1.09003 * 110.03243 * 238.56963 * 15 11 10 27 27 H 1.09004 * 110.03196 * 359.97438 * 15 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0465 -1.4001 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 16 1.1293 -2.7279 -0.0005 10 6 2.5158 -3.8914 -0.0021 11 6 1.9794 -5.3242 -0.0017 12 6 1.2671 -5.6214 1.3340 13 6 1.6295 -7.0974 1.6367 14 6 3.1005 -7.1932 1.1616 15 6 3.1444 -6.3234 -0.1117 16 1 -0.4850 0.8401 0.0004 17 1 3.1238 -3.7309 -0.8925 18 1 3.1252 -3.7317 0.8875 19 1 1.2879 -5.4640 -0.8327 20 1 1.6432 -4.9674 2.1207 21 1 0.1886 -5.5072 1.2250 22 1 0.9944 -7.7752 1.0663 23 1 1.5538 -7.3057 2.7039 24 1 3.3593 -8.2259 0.9272 25 1 3.7750 -6.7946 1.9194 26 1 3.0179 -6.9486 -0.9956 27 1 4.0920 -5.7875 -0.1658 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000062836022.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:00 Heat of formation + Delta-G solvation = -35.651245 kcal Electronic energy + Delta-G solvation = -9366.291999 eV Core-core repulsion = 7634.823904 eV Total energy + Delta-G solvation = -1731.468095 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 186.077 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -37.86906 -32.39818 -30.69574 -28.35184 -25.70223 -24.30383 -20.39393 -19.27341 -17.41898 -15.70001 -14.77311 -14.68873 -13.89170 -13.39608 -13.01383 -12.74750 -11.94421 -11.27504 -11.04709 -11.00223 -10.87720 -10.70013 -10.53873 -10.41359 -10.24638 -10.00878 -9.38909 -9.02028 -8.22226 -6.46822 -6.19092 -3.88339 3.23857 3.25194 3.31340 3.65823 4.26716 4.93881 4.98707 5.05444 5.16877 5.44098 5.70143 5.74135 5.85372 5.90985 6.00405 6.04164 6.15221 6.18504 6.37641 6.52255 6.57971 6.61450 6.75248 6.92571 7.64108 8.40403 9.27305 10.89079 Molecular weight = 186.08amu Principal moments of inertia in cm(-1) A = 0.088821 B = 0.008952 C = 0.008544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 315.165514 B = 3126.972870 C = 3276.405022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.870 5.870 2 C 0.071 3.929 3 Si 0.917 3.083 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.516 4.516 8 H 0.071 0.929 9 S -0.134 6.134 10 C -0.105 4.105 11 C -0.072 4.072 12 C -0.113 4.113 13 C -0.127 4.127 14 C -0.123 4.123 15 C -0.118 4.118 16 H 0.266 0.734 17 H 0.057 0.943 18 H 0.059 0.941 19 H 0.072 0.928 20 H 0.070 0.930 21 H 0.067 0.933 22 H 0.061 0.939 23 H 0.060 0.940 24 H 0.057 0.943 25 H 0.062 0.938 26 H 0.059 0.941 27 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.292 -10.418 1.527 11.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.506 5.506 2 C -0.138 4.138 3 Si 0.744 3.256 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.197 1.197 7 C -0.665 4.665 8 H 0.089 0.911 9 S 0.095 5.905 10 C -0.254 4.254 11 C -0.092 4.092 12 C -0.151 4.151 13 C -0.164 4.164 14 C -0.161 4.161 15 C -0.158 4.158 16 H 0.076 0.924 17 H 0.076 0.924 18 H 0.078 0.922 19 H 0.091 0.909 20 H 0.089 0.911 21 H 0.086 0.914 22 H 0.080 0.920 23 H 0.079 0.921 24 H 0.076 0.924 25 H 0.081 0.919 26 H 0.077 0.923 27 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 3.006 -10.479 1.526 11.008 hybrid contribution 1.894 1.362 -0.060 2.334 sum 4.900 -9.117 1.466 10.454 Atomic orbital electron populations 1.70028 1.05909 1.27218 1.47467 1.25001 0.95055 0.99024 0.94684 0.86186 0.79466 0.81657 0.78334 1.20310 1.20785 1.19716 1.22717 0.94520 0.91002 1.58217 0.91087 1.84585 1.09932 0.99260 1.96769 1.23459 1.02383 0.97049 1.02522 1.21502 0.96266 0.93030 0.98393 1.22413 1.00600 0.94897 0.97186 1.22537 0.96047 0.97603 1.00234 1.22340 0.97100 0.99001 0.97641 1.22250 0.98906 0.97156 0.97451 0.92379 0.92401 0.92240 0.90936 0.91127 0.91402 0.91976 0.92094 0.92391 0.91944 0.92267 0.91946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.37 13.22 55.49 0.73 -25.63 15 2 C 0.07 2.05 5.49 -17.43 -0.10 1.96 15 3 Si 0.92 21.85 29.55 -169.99 -5.02 16.82 15 4 H -0.28 -6.47 7.11 56.52 0.40 -6.07 15 5 H -0.28 -6.58 7.11 56.52 0.40 -6.18 15 6 H -0.27 -6.35 7.11 56.52 0.40 -5.95 15 7 C -0.52 -15.11 9.50 30.94 0.29 -14.81 15 8 H 0.07 2.02 7.80 -52.48 -0.41 1.61 15 9 S -0.13 -3.57 20.97 -107.50 -2.25 -5.82 15 10 C -0.11 -2.22 4.77 37.16 0.18 -2.04 15 11 C -0.07 -1.24 2.93 -89.50 -0.26 -1.51 15 12 C -0.11 -1.84 5.87 -25.03 -0.15 -1.99 15 13 C -0.13 -1.64 6.91 -24.70 -0.17 -1.81 15 14 C -0.12 -1.53 6.83 -25.08 -0.17 -1.70 15 15 C -0.12 -1.67 6.46 -25.61 -0.17 -1.83 15 16 H 0.27 7.51 8.31 -40.82 -0.34 7.17 15 17 H 0.06 1.21 8.14 -51.92 -0.42 0.79 15 18 H 0.06 1.25 8.02 -51.92 -0.42 0.84 15 19 H 0.07 1.28 8.14 -51.93 -0.42 0.86 15 20 H 0.07 1.23 7.77 -51.93 -0.40 0.83 15 21 H 0.07 1.14 8.14 -51.93 -0.42 0.71 15 22 H 0.06 0.75 8.14 -51.93 -0.42 0.33 15 23 H 0.06 0.72 8.14 -51.93 -0.42 0.30 15 24 H 0.06 0.62 8.14 -51.92 -0.42 0.20 15 25 H 0.06 0.77 8.14 -51.93 -0.42 0.34 15 26 H 0.06 0.76 8.14 -51.93 -0.42 0.33 15 27 H 0.06 0.88 7.67 -51.93 -0.40 0.48 15 LS Contribution 238.54 15.07 3.59 3.59 Total: -1.00 -30.55 238.54 -7.63 -38.18 By element: Atomic # 1 Polarization: 0.74 SS G_CDS: -4.14 Total: -3.40 kcal Atomic # 6 Polarization: -23.20 SS G_CDS: -0.54 Total: -23.74 kcal Atomic # 7 Polarization: -26.37 SS G_CDS: 0.73 Total: -25.63 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.82 kcal Atomic # 16 Polarization: -3.57 SS G_CDS: -2.25 Total: -5.82 kcal Total LS contribution 3.59 Total: 3.59 kcal Total: -30.55 -7.63 -38.18 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062836022.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.529 kcal (2) G-P(sol) polarization free energy of solvation -30.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds