Wall clock time and date at job start Mon Mar 30 2020 01:56:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86801 * 120.00102 * 2 1 4 4 H 1.48501 * 109.47405 * 270.00308 * 3 2 1 5 5 H 1.48505 * 109.47032 * 30.00068 * 3 2 1 6 6 H 1.48497 * 109.47409 * 150.00077 * 3 2 1 7 7 C 1.38795 * 120.00234 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00171 * 179.97438 * 7 2 1 9 9 S 1.76198 * 119.99810 * 359.97438 * 7 2 1 10 10 C 1.81002 * 100.00092 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47326 * 179.97438 * 10 9 7 12 12 C 1.54267 * 110.03373 * 292.91162 * 11 10 9 13 13 C 1.54968 * 104.16137 * 217.13581 * 12 11 10 14 14 C 1.54884 * 102.77441 * 37.88396 * 13 12 11 15 15 C 1.53874 * 110.03593 * 175.69082 * 11 10 9 16 16 H 0.97005 * 119.99806 * 359.97438 * 1 2 3 17 17 H 1.09002 * 109.47154 * 300.00093 * 10 9 7 18 18 H 1.09001 * 109.47171 * 60.00111 * 10 9 7 19 19 H 1.09004 * 110.01939 * 54.29550 * 11 10 9 20 20 H 1.09001 * 110.48609 * 335.77840 * 12 11 10 21 21 H 1.08999 * 110.49311 * 98.42344 * 12 11 10 22 22 H 1.08997 * 110.72048 * 279.57487 * 13 12 11 23 23 H 1.08993 * 110.92252 * 156.29196 * 13 12 11 24 24 H 1.09009 * 110.48779 * 203.40596 * 14 13 12 25 25 H 1.09001 * 110.59973 * 80.82109 * 14 13 12 26 26 H 1.09003 * 110.03243 * 238.56963 * 15 11 10 27 27 H 1.09004 * 110.03196 * 359.97438 * 15 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0465 -1.4001 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 16 1.1293 -2.7279 -0.0005 10 6 2.5158 -3.8914 -0.0021 11 6 1.9794 -5.3242 -0.0017 12 6 1.2671 -5.6214 1.3340 13 6 1.6295 -7.0974 1.6367 14 6 3.1005 -7.1932 1.1616 15 6 3.1444 -6.3234 -0.1117 16 1 -0.4850 0.8401 0.0004 17 1 3.1238 -3.7309 -0.8925 18 1 3.1252 -3.7317 0.8875 19 1 1.2879 -5.4640 -0.8327 20 1 1.6432 -4.9674 2.1207 21 1 0.1886 -5.5072 1.2250 22 1 0.9944 -7.7752 1.0663 23 1 1.5538 -7.3057 2.7039 24 1 3.3593 -8.2259 0.9272 25 1 3.7750 -6.7946 1.9194 26 1 3.0179 -6.9486 -0.9956 27 1 4.0920 -5.7875 -0.1658 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000062836022.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:00 Heat of formation + Delta-G solvation = -53.132331 kcal Electronic energy + Delta-G solvation = -9367.050036 eV Core-core repulsion = 7634.823904 eV Total energy + Delta-G solvation = -1732.226132 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 186.077 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -39.10195 -34.61541 -32.08175 -29.51230 -27.86114 -25.83866 -21.48597 -20.68570 -19.48379 -17.05014 -16.90524 -16.01972 -15.59591 -14.93461 -14.59068 -14.14667 -13.55552 -13.10532 -12.94093 -12.92788 -12.23346 -11.93352 -11.86470 -11.73927 -11.47150 -11.33629 -11.15951 -11.13108 -10.27718 -8.65360 -8.37952 -6.13642 1.30576 1.38196 1.47697 1.77729 2.28685 2.95934 3.31895 3.75565 3.80597 3.87306 4.35684 4.50342 4.61271 4.66950 4.74574 4.88883 4.95227 4.96897 5.12688 5.16363 5.29732 5.38186 5.44104 5.52397 5.55674 6.17032 7.04093 8.71470 Molecular weight = 186.08amu Principal moments of inertia in cm(-1) A = 0.088821 B = 0.008952 C = 0.008544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 315.165514 B = 3126.972870 C = 3276.405022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.016 3.984 3 Si 0.994 3.006 4 H -0.267 1.267 5 H -0.273 1.273 6 H -0.264 1.264 7 C -0.542 4.542 8 H 0.069 0.931 9 S -0.194 6.194 10 C -0.082 4.082 11 C -0.072 4.072 12 C -0.117 4.117 13 C -0.118 4.118 14 C -0.118 4.118 15 C -0.114 4.114 16 H 0.271 0.729 17 H 0.056 0.944 18 H 0.057 0.943 19 H 0.065 0.935 20 H 0.052 0.948 21 H 0.053 0.947 22 H 0.075 0.925 23 H 0.075 0.925 24 H 0.084 0.916 25 H 0.063 0.937 26 H 0.077 0.923 27 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.610 -11.179 1.641 12.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.189 4.189 3 Si 0.816 3.184 4 H -0.192 1.192 5 H -0.198 1.198 6 H -0.188 1.188 7 C -0.690 4.690 8 H 0.088 0.912 9 S 0.035 5.965 10 C -0.230 4.230 11 C -0.092 4.092 12 C -0.155 4.155 13 C -0.156 4.156 14 C -0.156 4.156 15 C -0.153 4.153 16 H 0.080 0.920 17 H 0.075 0.925 18 H 0.075 0.925 19 H 0.083 0.917 20 H 0.071 0.929 21 H 0.072 0.928 22 H 0.093 0.907 23 H 0.093 0.907 24 H 0.103 0.897 25 H 0.082 0.918 26 H 0.096 0.904 27 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 4.324 -11.256 1.639 12.168 hybrid contribution 1.473 1.539 -0.102 2.133 sum 5.797 -9.716 1.537 11.418 Atomic orbital electron populations 1.70157 1.07689 1.28533 1.48030 1.26059 0.96027 1.03076 0.93715 0.85019 0.78167 0.76372 0.78861 1.19230 1.19781 1.18800 1.23069 0.94683 0.92351 1.58878 0.91238 1.84582 1.14175 1.00817 1.96942 1.23433 0.99791 0.97617 1.02202 1.21547 0.97637 0.91263 0.98716 1.22389 0.99556 0.97409 0.96112 1.22511 0.96698 0.94866 1.01489 1.22343 0.96545 1.00134 0.96558 1.22227 0.97049 0.96641 0.99388 0.91951 0.92510 0.92470 0.91665 0.92948 0.92787 0.90658 0.90679 0.89700 0.91825 0.90436 0.92001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.75 13.22 21.65 0.29 -55.46 15 2 C 0.02 0.93 5.49 84.86 0.47 1.40 15 3 Si 0.99 44.72 29.55 68.60 2.03 46.75 15 4 H -0.27 -11.52 7.11 99.48 0.71 -10.82 15 5 H -0.27 -11.77 7.11 99.48 0.71 -11.06 15 6 H -0.26 -11.39 7.11 99.48 0.71 -10.68 15 7 C -0.54 -32.22 9.50 67.95 0.65 -31.58 15 8 H 0.07 4.00 7.80 -2.91 -0.02 3.98 15 9 S -0.19 -10.64 20.97 -56.49 -1.18 -11.82 15 10 C -0.08 -3.46 4.77 71.98 0.34 -3.11 15 11 C -0.07 -2.42 2.93 -10.07 -0.03 -2.45 15 12 C -0.12 -3.74 5.87 31.70 0.19 -3.56 15 13 C -0.12 -2.75 6.91 31.91 0.22 -2.53 15 14 C -0.12 -2.54 6.83 31.67 0.22 -2.33 15 15 C -0.11 -2.92 6.46 31.32 0.20 -2.71 15 16 H 0.27 15.43 8.31 -92.70 -0.77 14.66 15 17 H 0.06 2.38 8.14 -2.39 -0.02 2.36 15 18 H 0.06 2.42 8.02 -2.39 -0.02 2.40 15 19 H 0.06 2.28 8.14 -2.38 -0.02 2.27 15 20 H 0.05 1.85 7.77 -2.39 -0.02 1.83 15 21 H 0.05 1.84 8.14 -2.39 -0.02 1.82 15 22 H 0.07 1.58 8.14 -2.39 -0.02 1.56 15 23 H 0.07 1.56 8.14 -2.39 -0.02 1.54 15 24 H 0.08 1.43 8.14 -2.38 -0.02 1.41 15 25 H 0.06 1.37 8.14 -2.39 -0.02 1.35 15 26 H 0.08 1.73 8.14 -2.39 -0.02 1.71 15 27 H 0.06 1.60 7.67 -2.38 -0.02 1.58 15 Total: -1.00 -66.01 238.54 4.50 -61.51 By element: Atomic # 1 Polarization: 4.78 SS G_CDS: 1.12 Total: 5.90 kcal Atomic # 6 Polarization: -49.12 SS G_CDS: 2.25 Total: -46.87 kcal Atomic # 7 Polarization: -55.75 SS G_CDS: 0.29 Total: -55.46 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.75 kcal Atomic # 16 Polarization: -10.64 SS G_CDS: -1.18 Total: -11.82 kcal Total: -66.01 4.50 -61.51 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062836022.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.379 kcal (2) G-P(sol) polarization free energy of solvation -66.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds