Wall clock time and date at job start Mon Mar 30 2020 01:44:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48502 * 109.47432 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46890 * 299.99896 * 3 2 1 6 6 H 1.48501 * 109.47062 * 59.99944 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 S 1.81002 * 109.47156 * 179.97438 * 9 7 2 11 11 C 1.76193 * 100.00049 * 180.02562 * 10 9 7 12 12 N 1.31150 * 126.38150 * 0.02562 * 11 10 9 13 13 N 1.28654 * 109.30817 * 180.02562 * 12 11 10 14 14 C 1.30071 * 109.56671 * 0.02562 * 13 12 11 15 15 O 1.34638 * 126.38116 * 179.71575 * 11 10 9 16 16 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 17 17 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 18 18 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 19 19 H 1.08003 * 126.21018 * 179.97438 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 16 2.4271 -3.8750 0.0005 11 6 1.3070 -5.2351 -0.0002 12 7 -0.0026 -5.1643 -0.0011 13 7 -0.4929 -6.3538 -0.0009 14 6 0.4742 -7.2236 0.0006 15 8 1.6360 -6.5406 -0.0059 16 1 -0.4850 0.8401 0.0004 17 1 0.6239 -2.5567 0.8903 18 1 0.6246 -2.5571 -0.8897 19 1 0.3659 -8.2981 0.0016 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075321685.mol2 19 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:12 Heat of formation + Delta-G solvation = 7.924182 kcal Electronic energy + Delta-G solvation = -8875.522712 eV Core-core repulsion = 6906.570752 eV Total energy + Delta-G solvation = -1968.951960 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 186.020 amu Computer time = 0.07 seconds Orbital eigenvalues (eV) -45.08758 -37.21140 -35.35890 -32.38223 -30.77908 -25.82888 -24.95462 -24.46866 -19.92357 -18.52030 -18.37885 -17.67866 -16.69730 -16.43991 -15.19528 -14.62226 -14.43592 -13.52628 -13.07133 -12.83479 -12.77798 -12.52585 -12.18010 -11.65926 -11.62735 -11.30086 -10.76454 -8.86043 -8.35292 -6.53778 -0.28009 0.05098 1.28409 1.32501 1.44841 1.44932 1.60035 2.05642 2.36705 3.00293 3.60292 3.87468 4.07649 4.77367 4.81577 4.94723 5.49686 5.73803 6.55505 7.16607 7.16799 8.77052 Molecular weight = 186.02amu Principal moments of inertia in cm(-1) A = 0.103065 B = 0.009616 C = 0.008838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 271.607644 B = 2910.965004 C = 3167.426672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.018 3.982 3 Si 0.985 3.015 4 H -0.256 1.256 5 H -0.275 1.275 6 H -0.274 1.274 7 C -0.546 4.546 8 H 0.080 0.920 9 C 0.064 3.936 10 S 0.055 5.945 11 C 0.135 3.865 12 N -0.332 5.332 13 N -0.332 5.332 14 C 0.164 3.836 15 O -0.217 6.217 16 H 0.273 0.727 17 H 0.027 0.973 18 H 0.027 0.973 19 H 0.326 0.674 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.968 -9.987 0.012 11.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.184 4.184 3 Si 0.807 3.193 4 H -0.179 1.179 5 H -0.200 1.200 6 H -0.200 1.200 7 C -0.586 4.586 8 H 0.098 0.902 9 C -0.084 4.084 10 S 0.286 5.714 11 C -0.184 4.184 12 N -0.184 5.184 13 N -0.176 5.176 14 C -0.071 4.071 15 O -0.098 6.098 16 H 0.082 0.918 17 H 0.046 0.954 18 H 0.046 0.954 19 H 0.340 0.660 Dipole moment (debyes) X Y Z Total from point charges 4.786 -9.374 0.007 10.525 hybrid contribution -0.401 0.112 -0.005 0.416 sum 4.385 -9.261 0.002 10.247 Atomic orbital electron populations 1.70117 1.08088 1.28878 1.48830 1.25990 0.95810 1.03307 0.93284 0.85108 0.79014 0.77095 0.78082 1.17925 1.19989 1.19971 1.20950 0.93957 0.89015 1.54645 0.90227 1.21168 0.95074 0.91942 1.00182 1.85479 1.06945 0.89370 1.89641 1.30583 0.96911 0.88519 1.02348 1.75010 1.05610 1.16547 1.21238 1.73986 1.29868 0.95369 1.18374 1.31009 0.75865 1.03172 0.97024 1.85038 1.37679 1.16357 1.70725 0.91845 0.95425 0.95444 0.65969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.01 13.29 21.45 0.28 -53.72 13 2 C 0.02 1.00 5.46 84.66 0.46 1.46 13 3 Si 0.98 41.74 29.54 68.60 2.03 43.76 13 4 H -0.26 -10.21 7.11 99.48 0.71 -9.50 13 5 H -0.27 -11.34 7.11 99.48 0.71 -10.63 13 6 H -0.27 -11.33 7.11 99.48 0.71 -10.62 13 7 C -0.55 -29.57 9.13 25.60 0.23 -29.34 13 8 H 0.08 4.06 7.71 -2.91 -0.02 4.04 13 9 C 0.06 3.39 4.99 71.24 0.36 3.75 13 10 S 0.06 2.30 22.23 -56.49 -1.26 1.04 13 11 C 0.13 5.43 8.53 130.34 1.11 6.54 13 12 N -0.33 -14.83 11.63 -172.08 -2.00 -16.83 13 13 N -0.33 -12.22 12.20 -175.13 -2.14 -14.36 13 14 C 0.16 4.11 13.37 130.50 1.74 5.86 13 15 O -0.22 -6.88 10.90 -10.36 -0.11 -6.99 13 16 H 0.27 14.82 8.31 -92.71 -0.77 14.05 13 17 H 0.03 1.58 8.14 -2.39 -0.02 1.56 13 18 H 0.03 1.57 8.14 -2.40 -0.02 1.55 13 19 H 0.33 2.72 8.06 -2.91 -0.02 2.70 13 Total: -1.00 -67.66 202.94 1.98 -65.69 By element: Atomic # 1 Polarization: -8.13 SS G_CDS: 1.27 Total: -6.86 kcal Atomic # 6 Polarization: -15.64 SS G_CDS: 3.91 Total: -11.73 kcal Atomic # 7 Polarization: -81.05 SS G_CDS: -3.85 Total: -84.91 kcal Atomic # 8 Polarization: -6.88 SS G_CDS: -0.11 Total: -6.99 kcal Atomic # 14 Polarization: 41.74 SS G_CDS: 2.03 Total: 43.76 kcal Atomic # 16 Polarization: 2.30 SS G_CDS: -1.26 Total: 1.04 kcal Total: -67.66 1.98 -65.69 kcal The number of atoms in the molecule is 19 The average number of expansion shells was 13.00 The maximum number of expansion shells was 13 The minimum number of expansion shells was 13 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075321685.mol2 19 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.612 kcal (2) G-P(sol) polarization free energy of solvation -67.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.688 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.07 seconds