Wall clock time and date at job start Mon Mar 30 2020 02:04:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00005 * 2 1 4 4 H 1.48503 * 109.46756 * 239.99477 * 3 2 1 5 5 H 1.48490 * 109.47381 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47117 * 120.00084 * 3 2 1 7 7 C 1.37876 * 119.99563 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99683 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47466 * 179.97438 * 9 7 2 11 11 O 1.42898 * 109.47319 * 180.02562 * 10 9 7 12 12 C 1.42902 * 114.00186 * 180.02562 * 11 10 9 13 13 H 1.09001 * 110.45442 * 27.39742 * 12 11 10 14 14 C 1.54509 * 110.50973 * 149.99858 * 12 11 10 15 15 C 1.54479 * 104.06044 * 118.64601 * 14 12 11 16 16 O 1.44424 * 104.80491 * 23.97796 * 15 14 12 17 17 C 1.44425 * 105.27295 * 319.48578 * 16 15 14 18 18 H 0.97002 * 119.99731 * 0.02562 * 1 2 3 19 19 H 1.09002 * 109.47120 * 59.99671 * 9 7 2 20 20 H 1.08998 * 109.46862 * 300.00473 * 9 7 2 21 21 H 1.09002 * 109.47153 * 59.99773 * 10 9 7 22 22 H 1.09001 * 109.46832 * 299.99964 * 10 9 7 23 23 H 1.09001 * 110.50695 * 237.28723 * 14 12 11 24 24 H 1.08994 * 110.51366 * 359.97438 * 14 12 11 25 25 H 1.09003 * 110.37023 * 142.80807 * 15 14 12 26 26 H 1.08997 * 110.36977 * 265.03167 * 15 14 12 27 27 H 1.08995 * 110.37424 * 281.68338 * 17 16 15 28 28 H 1.08997 * 110.36950 * 159.34055 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 8 1.5306 -4.8996 -0.0001 12 6 2.3705 -6.0558 0.0005 13 1 3.3276 -5.8311 0.4711 14 6 1.6742 -7.2304 0.7235 15 6 1.5458 -8.3184 -0.3657 16 8 2.5876 -8.0121 -1.3179 17 6 2.5803 -6.5730 -1.4400 18 1 -0.4850 0.8401 -0.0004 19 1 0.6246 -2.5571 -0.8897 20 1 0.6240 -2.5566 0.8902 21 1 2.8718 -3.6044 0.8905 22 1 2.8718 -3.6044 -0.8895 23 1 2.2883 -7.5880 1.5500 24 1 0.6896 -6.9291 1.0809 25 1 1.7042 -9.3071 0.0651 26 1 0.5667 -8.2651 -0.8416 27 1 1.7606 -6.2508 -2.0820 28 1 3.5334 -6.2209 -1.8344 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082453696.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:34 Heat of formation + Delta-G solvation = -127.391478 kcal Electronic energy + Delta-G solvation = -11282.406877 eV Core-core repulsion = 9104.207756 eV Total energy + Delta-G solvation = -2178.199121 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -40.58254 -38.23443 -35.37095 -32.77036 -31.39966 -29.55009 -26.65264 -23.91793 -22.91739 -22.08368 -18.79275 -17.78770 -17.45602 -16.74915 -16.53998 -15.96654 -15.73119 -14.75654 -14.39536 -14.11976 -13.60820 -13.22119 -12.97152 -12.70371 -12.48184 -12.33320 -12.02330 -11.71210 -11.46710 -11.38012 -10.90792 -10.63755 -10.37289 -8.24383 -6.37806 1.41187 1.45059 1.53114 2.36140 2.67771 3.09588 3.15490 3.60669 3.82824 3.95720 4.24925 4.33064 4.40142 4.42663 4.69777 4.73665 4.80043 4.90364 4.95228 5.01648 5.35122 5.55730 5.63967 5.75512 6.10482 6.39826 6.77965 7.32211 8.88459 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.102645 B = 0.006979 C = 0.006811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 272.718514 B = 4010.862341 C = 4110.068440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.000 4.000 3 Si 0.975 3.025 4 H -0.264 1.264 5 H -0.283 1.283 6 H -0.264 1.264 7 C -0.547 4.547 8 H 0.069 0.931 9 C 0.027 3.973 10 C 0.083 3.917 11 O -0.399 6.399 12 C 0.042 3.958 13 H 0.084 0.916 14 C -0.154 4.154 15 C 0.044 3.956 16 O -0.388 6.388 17 C 0.026 3.974 18 H 0.266 0.734 19 H -0.006 1.006 20 H -0.006 1.006 21 H 0.049 0.951 22 H 0.048 0.952 23 H 0.102 0.898 24 H 0.083 0.917 25 H 0.120 0.880 26 H 0.062 0.938 27 H 0.059 0.941 28 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.465 -12.317 0.412 13.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.198 4.198 3 Si 0.798 3.202 4 H -0.189 1.189 5 H -0.208 1.208 6 H -0.189 1.189 7 C -0.585 4.585 8 H 0.087 0.913 9 C -0.011 4.011 10 C 0.007 3.993 11 O -0.319 6.319 12 C -0.016 4.016 13 H 0.102 0.898 14 C -0.191 4.191 15 C -0.032 4.032 16 O -0.307 6.307 17 C -0.052 4.052 18 H 0.075 0.925 19 H 0.012 0.988 20 H 0.013 0.987 21 H 0.067 0.933 22 H 0.066 0.934 23 H 0.121 0.879 24 H 0.102 0.898 25 H 0.138 0.862 26 H 0.081 0.919 27 H 0.077 0.923 28 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 5.252 -12.375 0.302 13.447 hybrid contribution 0.061 1.145 0.045 1.148 sum 5.313 -11.230 0.347 12.429 Atomic orbital electron populations 1.70121 1.08050 1.28175 1.50824 1.26048 0.95810 1.03676 0.94256 0.85359 0.78130 0.77311 0.79393 1.18895 1.20809 1.18857 1.21448 0.93775 0.91419 1.51878 0.91329 1.18945 0.94664 0.91920 0.95529 1.22578 0.94828 0.82525 0.99383 1.87954 1.34855 1.14171 1.94913 1.23696 0.94956 0.86844 0.96094 0.89826 1.23069 1.02827 0.93869 0.99352 1.23579 0.91327 0.99787 0.88520 1.89080 1.56319 1.21225 1.64119 1.23933 1.03124 0.81145 0.96952 0.92527 0.98772 0.98715 0.93299 0.93392 0.87921 0.89787 0.86213 0.91950 0.92258 0.87696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.27 13.29 21.45 0.28 -56.98 15 2 C 0.00 0.02 5.46 84.65 0.46 0.49 15 3 Si 0.97 43.74 29.54 68.60 2.03 45.77 15 4 H -0.26 -11.30 7.11 99.48 0.71 -10.59 15 5 H -0.28 -12.43 7.11 99.48 0.71 -11.72 15 6 H -0.26 -11.27 7.11 99.48 0.71 -10.56 15 7 C -0.55 -31.24 9.11 25.60 0.23 -31.01 15 8 H 0.07 3.65 7.74 -2.91 -0.02 3.63 15 9 C 0.03 1.47 5.34 29.85 0.16 1.63 15 10 C 0.08 3.57 5.71 71.98 0.41 3.98 15 11 O -0.40 -15.93 9.98 -148.98 -1.49 -17.41 15 12 C 0.04 1.27 3.61 31.61 0.11 1.38 15 13 H 0.08 2.29 7.82 -2.39 -0.02 2.27 15 14 C -0.15 -3.68 6.90 31.61 0.22 -3.47 15 15 C 0.04 0.96 7.63 72.49 0.55 1.51 15 16 O -0.39 -10.59 11.65 -148.98 -1.74 -12.32 15 17 C 0.03 0.72 7.38 72.48 0.53 1.26 15 18 H 0.27 15.27 8.31 -92.71 -0.77 14.50 15 19 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 15 20 H -0.01 -0.33 8.14 -2.39 -0.02 -0.35 15 21 H 0.05 1.98 8.11 -2.39 -0.02 1.96 15 22 H 0.05 1.94 8.14 -2.39 -0.02 1.92 15 23 H 0.10 1.98 8.14 -2.39 -0.02 1.96 15 24 H 0.08 2.15 8.00 -2.39 -0.02 2.13 15 25 H 0.12 1.89 8.14 -2.39 -0.02 1.87 15 26 H 0.06 1.34 8.14 -2.39 -0.02 1.32 15 27 H 0.06 1.81 8.08 -2.39 -0.02 1.79 15 28 H 0.10 2.64 8.14 -2.39 -0.02 2.62 15 Total: -1.00 -65.70 241.97 2.89 -62.81 By element: Atomic # 1 Polarization: 1.24 SS G_CDS: 1.12 Total: 2.36 kcal Atomic # 6 Polarization: -26.91 SS G_CDS: 2.69 Total: -24.22 kcal Atomic # 7 Polarization: -57.27 SS G_CDS: 0.28 Total: -56.98 kcal Atomic # 8 Polarization: -26.51 SS G_CDS: -3.22 Total: -29.73 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.77 kcal Total: -65.70 2.89 -62.81 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082453696.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.577 kcal (2) G-P(sol) polarization free energy of solvation -65.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds