Wall clock time and date at job start Mon Mar 30 2020 01:56:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86795 * 120.00339 * 2 1 4 4 H 1.48502 * 109.47335 * 240.00367 * 3 2 1 5 5 H 1.48500 * 109.47151 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.47125 * 119.99970 * 3 2 1 7 7 C 1.37885 * 119.99597 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99392 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00046 * 359.97438 * 7 2 1 10 10 H 1.09002 * 109.97020 * 60.00216 * 9 7 2 11 11 C 1.51589 * 110.06073 * 181.32689 * 9 7 2 12 12 C 1.52988 * 109.41214 * 222.06477 * 11 9 7 13 13 C 1.53779 * 115.51279 * 318.19050 * 12 11 9 14 14 S 1.79959 * 113.13001 * 315.96785 * 13 12 11 15 15 C 1.83633 * 102.85017 * 86.70193 * 14 13 12 16 16 C 1.45389 * 109.69455 * 291.07096 * 15 14 13 17 17 H 0.96999 * 119.99734 * 359.97438 * 1 2 3 18 18 H 1.09002 * 109.48602 * 342.04404 * 11 9 7 19 19 H 1.08999 * 109.48306 * 102.08431 * 11 9 7 20 20 H 1.08995 * 108.27572 * 196.61878 * 12 11 9 21 21 H 1.09007 * 108.12206 * 79.64371 * 12 11 9 22 22 H 1.08994 * 108.75100 * 195.01768 * 13 12 11 23 23 H 1.09003 * 108.65288 * 76.83826 * 13 12 11 24 24 H 1.08997 * 109.43472 * 171.00457 * 15 14 13 25 25 H 1.08999 * 109.39510 * 51.11417 * 15 14 13 26 26 H 1.09000 * 108.31136 * 303.21221 * 16 15 14 27 27 H 1.08995 * 108.16766 * 186.13945 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1942 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 1 0.6209 -2.5653 -0.8875 11 6 2.2237 -3.6614 0.0318 12 6 1.7477 -4.7498 -0.9322 13 6 0.2357 -5.0297 -0.9207 14 16 -0.4547 -5.1163 0.7389 15 6 -0.8436 -3.3608 1.1116 16 6 0.3903 -2.6068 1.2621 17 1 -0.4850 0.8401 0.0004 18 1 3.2127 -3.3162 -0.2695 19 1 2.2723 -4.0668 1.0424 20 1 2.2685 -5.6753 -0.6867 21 1 2.0335 -4.4566 -1.9424 22 1 0.0508 -5.9770 -1.4271 23 1 -0.2701 -4.2353 -1.4695 24 1 -1.4178 -3.3050 2.0364 25 1 -1.4293 -2.9386 0.2950 26 1 0.9864 -3.0781 2.0436 27 1 0.1350 -1.5990 1.5895 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084233172.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:01 Heat of formation + Delta-G solvation = -34.931525 kcal Electronic energy + Delta-G solvation = -10024.051855 eV Core-core repulsion = 8292.614970 eV Total energy + Delta-G solvation = -1731.436885 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 186.077 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -38.54366 -34.60035 -33.39926 -30.41797 -27.27389 -24.77734 -22.71125 -20.73866 -18.58487 -17.05681 -16.65645 -15.73731 -15.53197 -15.25960 -14.48109 -14.23576 -13.75169 -13.51248 -12.83957 -12.73691 -12.46054 -12.18928 -11.81879 -11.67484 -11.49706 -10.86520 -10.82737 -10.50833 -10.27264 -8.55399 -8.09276 -6.21835 0.98389 1.42099 1.42550 1.49927 1.73160 2.43655 3.17685 3.96619 4.08191 4.17453 4.34806 4.45787 4.66602 4.83587 4.91686 4.96469 5.11022 5.19397 5.36253 5.47330 5.57465 5.66059 5.99003 6.07650 6.42341 6.90232 7.45892 8.95081 Molecular weight = 186.08amu Principal moments of inertia in cm(-1) A = 0.063870 B = 0.013149 C = 0.011768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 438.284239 B = 2128.862366 C = 2378.768505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.014 3.986 3 Si 0.948 3.052 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.533 4.533 8 H 0.051 0.949 9 C 0.048 3.952 10 H 0.005 0.995 11 C -0.108 4.108 12 C -0.105 4.105 13 C -0.072 4.072 14 S -0.302 6.302 15 C -0.035 4.035 16 C -0.108 4.108 17 H 0.260 0.740 18 H 0.049 0.951 19 H 0.054 0.946 20 H 0.071 0.929 21 H 0.063 0.937 22 H 0.118 0.882 23 H 0.067 0.933 24 H 0.098 0.902 25 H 0.064 0.936 26 H 0.038 0.962 27 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.353 -6.757 -0.408 6.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.185 4.185 3 Si 0.775 3.225 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.571 4.571 8 H 0.069 0.931 9 C 0.030 3.970 10 H 0.023 0.977 11 C -0.145 4.145 12 C -0.145 4.145 13 C -0.220 4.220 14 S -0.076 6.076 15 C -0.183 4.183 16 C -0.147 4.147 17 H 0.069 0.931 18 H 0.068 0.932 19 H 0.072 0.928 20 H 0.090 0.910 21 H 0.082 0.918 22 H 0.136 0.864 23 H 0.086 0.914 24 H 0.116 0.884 25 H 0.083 0.917 26 H 0.057 0.943 27 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 0.028 -7.546 0.224 7.550 hybrid contribution 0.440 2.235 -0.742 2.396 sum 0.468 -5.311 -0.519 5.357 Atomic orbital electron populations 1.70039 1.06961 1.27147 1.50994 1.25695 0.95680 1.02103 0.94978 0.85759 0.78516 0.79538 0.78729 1.19837 1.21059 1.19823 1.21664 0.92886 0.92094 1.50425 0.93087 1.18471 0.93219 0.92543 0.92813 0.97728 1.21619 0.98850 0.95255 0.98813 1.21693 0.93656 0.99146 0.99973 1.23238 0.98829 1.05414 0.94493 1.86157 1.81271 1.15607 1.24530 1.22151 1.00742 0.91311 1.04059 1.20439 0.94996 0.99281 0.99973 0.93100 0.93194 0.92753 0.91031 0.91831 0.86422 0.91449 0.88378 0.91742 0.94326 0.92488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.40 11.71 21.45 0.25 -51.15 15 2 C 0.01 0.79 5.07 84.66 0.43 1.21 15 3 Si 0.95 43.10 29.54 68.60 2.03 45.13 15 4 H -0.27 -12.13 7.11 99.48 0.71 -11.42 15 5 H -0.29 -12.74 7.11 99.48 0.71 -12.04 15 6 H -0.27 -12.13 7.11 99.48 0.71 -11.42 15 7 C -0.53 -28.94 8.47 25.60 0.22 -28.72 15 8 H 0.05 2.74 7.40 -2.91 -0.02 2.72 15 9 C 0.05 2.33 1.77 -11.94 -0.02 2.31 15 10 H 0.00 0.25 6.23 -2.39 -0.01 0.23 15 11 C -0.11 -4.40 5.16 30.13 0.16 -4.24 15 12 C -0.11 -3.53 5.63 30.85 0.17 -3.35 15 13 C -0.07 -2.35 5.60 72.24 0.40 -1.95 15 14 S -0.30 -10.75 21.56 -56.49 -1.22 -11.97 15 15 C -0.04 -1.43 6.06 69.66 0.42 -1.01 15 16 C -0.11 -4.99 4.24 28.34 0.12 -4.87 15 17 H 0.26 14.06 8.31 -92.71 -0.77 13.29 15 18 H 0.05 2.06 7.43 -2.39 -0.02 2.04 15 19 H 0.05 2.19 6.84 -2.39 -0.02 2.18 15 20 H 0.07 2.07 8.14 -2.39 -0.02 2.05 15 21 H 0.06 2.05 8.14 -2.38 -0.02 2.03 15 22 H 0.12 3.14 8.14 -2.54 -0.02 3.12 15 23 H 0.07 2.43 7.06 -2.53 -0.02 2.41 15 24 H 0.10 3.60 8.14 -2.39 -0.02 3.58 15 25 H 0.06 2.78 8.14 -2.39 -0.02 2.76 15 26 H 0.04 1.73 6.99 -2.39 -0.02 1.71 15 27 H 0.06 3.02 6.03 -2.39 -0.01 3.00 15 Total: -1.00 -56.46 223.13 4.09 -52.36 By element: Atomic # 1 Polarization: 5.11 SS G_CDS: 1.13 Total: 6.24 kcal Atomic # 6 Polarization: -42.51 SS G_CDS: 1.90 Total: -40.61 kcal Atomic # 7 Polarization: -51.40 SS G_CDS: 0.25 Total: -51.15 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.13 kcal Atomic # 16 Polarization: -10.75 SS G_CDS: -1.22 Total: -11.97 kcal Total: -56.46 4.09 -52.36 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084233172.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.432 kcal (2) G-P(sol) polarization free energy of solvation -56.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds