Wall clock time and date at job start Mon Mar 30 2020 01:56:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86806 * 119.99558 * 2 1 4 4 H 1.48497 * 109.46950 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47099 * 300.00399 * 3 2 1 6 6 H 1.48496 * 109.47055 * 59.99957 * 3 2 1 7 7 C 1.37873 * 120.00672 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00002 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99698 * 359.97438 * 7 2 1 10 10 H 1.09002 * 108.19359 * 299.99927 * 9 7 2 11 11 C 1.53076 * 108.29452 * 182.82973 * 9 7 2 12 12 C 1.51219 * 105.10934 * 143.82498 * 11 9 7 13 13 C 1.54623 * 108.98310 * 105.60870 * 12 11 9 14 14 S 1.82333 * 110.93704 * 320.81199 * 13 12 11 15 15 C 1.79262 * 106.80342 * 319.08075 * 14 13 12 16 16 C 1.44825 * 108.29391 * 57.17012 * 9 7 2 17 17 H 0.96999 * 120.00562 * 359.97438 * 1 2 3 18 18 H 1.08999 * 110.32233 * 262.94934 * 11 9 7 19 19 H 1.08999 * 110.32244 * 25.19831 * 11 9 7 20 20 H 1.08994 * 109.54930 * 345.78395 * 12 11 9 21 21 H 1.09004 * 109.64439 * 225.48575 * 12 11 9 22 22 H 1.08999 * 109.18565 * 200.43694 * 13 12 11 23 23 H 1.08998 * 109.14123 * 81.16271 * 13 12 11 24 24 H 1.09003 * 109.43526 * 328.58874 * 15 14 13 25 25 H 1.08993 * 109.43297 * 208.72363 * 15 14 13 26 26 H 1.08999 * 109.30650 * 305.72203 * 16 9 7 27 27 H 1.09000 * 109.30654 * 65.31484 * 16 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 3.7090 1.3466 -0.0006 5 1 1.8902 2.3966 -1.2125 6 1 1.8902 2.3965 1.2125 7 6 2.0047 -1.1939 -0.0005 8 1 3.0846 -1.1938 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 1 0.6330 -2.5352 0.8965 11 6 2.2682 -3.6410 0.0706 12 6 1.6142 -4.6983 0.9315 13 6 1.1412 -5.8606 0.0281 14 16 0.4550 -5.2302 -1.5390 15 6 -0.5229 -3.7840 -1.1320 16 6 0.3779 -2.5199 -1.1556 17 1 -0.4851 0.8400 0.0004 18 1 2.4691 -4.0317 -0.9270 19 1 3.1914 -3.2972 0.5370 20 1 0.7575 -4.2678 1.4499 21 1 2.3324 -5.0727 1.6609 22 1 0.3740 -6.4315 0.5512 23 1 1.9877 -6.5125 -0.1880 24 1 -0.9523 -3.9047 -0.1374 25 1 -1.3249 -3.6715 -1.8614 26 1 -0.2505 -1.6293 -1.1483 27 1 0.9811 -2.5277 -2.0634 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084233175.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:02 Heat of formation + Delta-G solvation = -28.785210 kcal Electronic energy + Delta-G solvation = -10006.049172 eV Core-core repulsion = 8274.878811 eV Total energy + Delta-G solvation = -1731.170361 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 186.077 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -38.80830 -34.81152 -33.01467 -30.14962 -27.05857 -25.02299 -22.58301 -21.12318 -18.62324 -17.12899 -16.64601 -15.65164 -15.42911 -15.17192 -14.63410 -14.23602 -13.47619 -13.42515 -12.89431 -12.77088 -12.53034 -12.23977 -11.95861 -11.77962 -11.27321 -11.03788 -10.73439 -10.52926 -10.26903 -8.40929 -8.01954 -6.23366 0.92016 1.38768 1.41352 1.52143 1.88076 2.42603 3.15994 3.95755 4.05552 4.22583 4.34104 4.41493 4.59199 4.78170 4.80636 4.94880 5.10579 5.23751 5.33232 5.50403 5.63790 5.73666 6.05306 6.28167 6.47680 6.91869 7.45246 8.93370 Molecular weight = 186.08amu Principal moments of inertia in cm(-1) A = 0.069944 B = 0.012487 C = 0.011422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 400.226636 B = 2241.742396 C = 2450.768395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.008 3.992 3 Si 0.952 3.048 4 H -0.269 1.269 5 H -0.280 1.280 6 H -0.281 1.281 7 C -0.531 4.531 8 H 0.049 0.951 9 C 0.036 3.964 10 H -0.007 1.007 11 C -0.116 4.116 12 C -0.118 4.118 13 C -0.067 4.067 14 S -0.297 6.297 15 C -0.074 4.074 16 C -0.096 4.096 17 H 0.261 0.739 18 H 0.074 0.926 19 H 0.048 0.952 20 H 0.049 0.951 21 H 0.086 0.914 22 H 0.091 0.909 23 H 0.117 0.883 24 H 0.069 0.931 25 H 0.096 0.904 26 H 0.087 0.913 27 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.060 -8.228 0.101 8.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.190 4.190 3 Si 0.778 3.222 4 H -0.194 1.194 5 H -0.206 1.206 6 H -0.207 1.207 7 C -0.569 4.569 8 H 0.067 0.933 9 C 0.018 3.982 10 H 0.011 0.989 11 C -0.154 4.154 12 C -0.157 4.157 13 C -0.215 4.215 14 S -0.071 6.071 15 C -0.222 4.222 16 C -0.136 4.136 17 H 0.070 0.930 18 H 0.093 0.907 19 H 0.067 0.933 20 H 0.068 0.932 21 H 0.104 0.896 22 H 0.110 0.890 23 H 0.135 0.865 24 H 0.088 0.912 25 H 0.114 0.886 26 H 0.105 0.895 27 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 1.042 -8.533 -0.860 8.639 hybrid contribution -0.002 1.742 1.258 2.149 sum 1.040 -6.791 0.398 6.882 Atomic orbital electron populations 1.69872 1.06974 1.26895 1.52029 1.25736 0.95750 1.02344 0.95127 0.85589 0.79064 0.79946 0.77580 1.19381 1.20617 1.20684 1.21896 0.93011 0.92441 1.49542 0.93251 1.17539 0.93288 0.93230 0.94120 0.98935 1.21650 0.98056 0.95708 1.00033 1.21970 1.00540 0.95192 0.97991 1.23973 1.03643 0.99618 0.94228 1.85651 1.65685 1.35520 1.20194 1.23577 0.99504 0.95283 1.03824 1.20629 0.98144 0.96536 0.98272 0.92992 0.90748 0.93344 0.93200 0.89556 0.89004 0.86509 0.91217 0.88591 0.89513 0.95062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.47 10.98 21.45 0.24 -52.23 15 2 C 0.01 0.44 5.25 84.65 0.44 0.88 15 3 Si 0.95 43.83 29.54 68.60 2.03 45.86 15 4 H -0.27 -12.11 7.11 99.48 0.71 -11.40 15 5 H -0.28 -12.66 7.11 99.48 0.71 -11.95 15 6 H -0.28 -12.68 7.11 99.48 0.71 -11.97 15 7 C -0.53 -29.42 8.37 25.60 0.21 -29.20 15 8 H 0.05 2.72 7.45 -2.91 -0.02 2.70 15 9 C 0.04 1.81 1.49 -13.99 -0.02 1.79 15 10 H -0.01 -0.40 6.70 -2.39 -0.02 -0.42 15 11 C -0.12 -4.78 5.21 30.04 0.16 -4.62 15 12 C -0.12 -3.94 5.70 30.57 0.17 -3.77 15 13 C -0.07 -1.91 6.59 72.53 0.48 -1.44 15 14 S -0.30 -10.33 20.07 -56.49 -1.13 -11.46 15 15 C -0.07 -2.91 5.94 72.75 0.43 -2.48 15 16 C -0.10 -4.62 4.54 28.89 0.13 -4.49 15 17 H 0.26 14.18 8.31 -92.71 -0.77 13.40 15 18 H 0.07 3.03 6.21 -2.39 -0.01 3.01 15 19 H 0.05 2.02 7.55 -2.39 -0.02 2.00 15 20 H 0.05 1.84 6.55 -2.39 -0.02 1.82 15 21 H 0.09 2.42 8.14 -2.38 -0.02 2.40 15 22 H 0.09 2.28 8.14 -2.39 -0.02 2.26 15 23 H 0.12 2.82 8.14 -2.39 -0.02 2.80 15 24 H 0.07 2.74 7.89 -2.49 -0.02 2.72 15 25 H 0.10 3.52 8.14 -2.50 -0.02 3.50 15 26 H 0.09 4.74 5.35 -2.39 -0.01 4.73 15 27 H 0.03 1.53 8.09 -2.39 -0.02 1.51 15 Total: -1.00 -58.30 221.67 4.27 -54.03 By element: Atomic # 1 Polarization: 5.99 SS G_CDS: 1.13 Total: 7.13 kcal Atomic # 6 Polarization: -45.33 SS G_CDS: 2.01 Total: -43.32 kcal Atomic # 7 Polarization: -52.47 SS G_CDS: 0.24 Total: -52.23 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.86 kcal Atomic # 16 Polarization: -10.33 SS G_CDS: -1.13 Total: -11.46 kcal Total: -58.30 4.27 -54.03 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084233175.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.246 kcal (2) G-P(sol) polarization free energy of solvation -58.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds