Wall clock time and date at job start Mon Mar 30 2020 01:56:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31524 * 1 3 3 Si 1.86797 * 119.99908 * 2 1 4 4 H 1.48504 * 109.47066 * 270.00096 * 3 2 1 5 5 H 1.48500 * 109.47363 * 29.99810 * 3 2 1 6 6 H 1.48496 * 109.46896 * 150.00122 * 3 2 1 7 7 C 1.37875 * 119.99546 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99436 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00661 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47262 * 179.97438 * 9 7 2 11 11 C 1.52995 * 109.46888 * 180.02562 * 10 9 7 12 12 H 1.09004 * 109.60353 * 306.12604 * 11 10 9 13 13 C 1.52945 * 109.60257 * 185.99020 * 11 10 9 14 14 C 1.53707 * 112.49105 * 209.96738 * 13 11 10 15 15 S 1.83456 * 104.98437 * 2.86159 * 14 13 11 16 16 C 1.55150 * 109.60742 * 66.45226 * 11 10 9 17 17 H 0.96993 * 119.99849 * 0.02562 * 1 2 3 18 18 H 1.08997 * 109.47258 * 59.99598 * 9 7 2 19 19 H 1.09006 * 109.46755 * 299.99880 * 9 7 2 20 20 H 1.08997 * 109.47232 * 59.99681 * 10 9 7 21 21 H 1.09001 * 109.46782 * 299.99543 * 10 9 7 22 22 H 1.09004 * 108.88613 * 330.76095 * 13 11 10 23 23 H 1.09003 * 108.89102 * 89.17384 * 13 11 10 24 24 H 1.09003 * 110.33957 * 121.69773 * 14 13 11 25 25 H 1.08998 * 110.34337 * 243.94992 * 14 13 11 26 26 H 1.09002 * 111.13093 * 279.28098 * 16 11 10 27 27 H 1.08998 * 111.13063 * 43.41410 * 16 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2511 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4803 -4.9871 -0.0001 12 1 0.7729 -5.0013 0.8291 13 6 2.4646 -6.1480 0.1502 14 6 1.9724 -7.4295 -0.5411 15 16 0.3934 -6.9572 -1.3470 16 6 0.7147 -5.1456 -1.3402 17 1 -0.4849 0.8400 -0.0004 18 1 0.6247 -2.5572 -0.8896 19 1 0.6241 -2.5567 0.8904 20 1 2.8720 -3.6044 0.8905 21 1 2.8719 -3.6044 -0.8895 22 1 3.4213 -5.8579 -0.2842 23 1 2.6095 -6.3527 1.2110 24 1 2.6948 -7.7584 -1.2881 25 1 1.8024 -8.2156 0.1946 26 1 -0.2177 -4.5811 -1.3293 27 1 1.3379 -4.8539 -2.1856 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084233217.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:12 Heat of formation + Delta-G solvation = -31.805593 kcal Electronic energy + Delta-G solvation = -9461.156464 eV Core-core repulsion = 7729.855129 eV Total energy + Delta-G solvation = -1731.301335 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 186.077 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -36.93924 -33.23794 -31.07265 -28.40518 -25.75894 -23.71734 -20.81338 -19.46332 -16.58590 -15.87237 -15.44328 -14.47281 -14.02934 -13.54011 -13.04964 -12.48074 -12.01421 -11.66787 -11.53306 -11.43899 -10.95705 -10.76922 -10.49503 -10.24982 -9.89361 -9.58545 -9.29865 -9.02830 -8.36144 -7.51749 -6.01572 -4.04165 2.11567 2.58900 3.30683 3.37189 3.40188 4.44214 4.82718 4.92318 5.19877 5.28096 5.34459 5.53486 5.71602 5.86422 5.96210 6.19774 6.21222 6.28578 6.61709 6.81172 7.06556 7.64951 7.78629 7.97972 8.40448 9.02946 9.60168 11.09672 Molecular weight = 186.08amu Principal moments of inertia in cm(-1) A = 0.089844 B = 0.008141 C = 0.007698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 311.575168 B = 3438.762059 C = 3636.464565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.057 3.943 3 Si 0.891 3.109 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.522 4.522 8 H 0.054 0.946 9 C 0.020 3.980 10 C -0.101 4.101 11 C -0.092 4.092 12 H 0.080 0.920 13 C -0.126 4.126 14 C -0.063 4.063 15 S -0.333 6.333 16 C -0.044 4.044 17 H 0.261 0.739 18 H 0.018 0.982 19 H 0.016 0.984 20 H 0.052 0.948 21 H 0.051 0.949 22 H 0.071 0.929 23 H 0.073 0.927 24 H 0.084 0.916 25 H 0.091 0.909 26 H 0.109 0.891 27 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.754 -10.754 -0.625 11.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.144 4.144 3 Si 0.719 3.281 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.561 4.561 8 H 0.072 0.928 9 C -0.017 4.017 10 C -0.140 4.140 11 C -0.112 4.112 12 H 0.099 0.901 13 C -0.165 4.165 14 C -0.212 4.212 15 S -0.106 6.106 16 C -0.192 4.192 17 H 0.070 0.930 18 H 0.036 0.964 19 H 0.034 0.966 20 H 0.071 0.929 21 H 0.069 0.931 22 H 0.089 0.911 23 H 0.092 0.908 24 H 0.102 0.898 25 H 0.110 0.890 26 H 0.127 0.873 27 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 2.662 -11.328 -1.031 11.682 hybrid contribution 1.346 1.606 0.375 2.129 sum 4.008 -9.722 -0.655 10.536 Atomic orbital electron populations 1.69963 1.06046 1.26621 1.50811 1.25020 0.94834 0.99238 0.95311 0.86610 0.79854 0.83537 0.78104 1.20670 1.21219 1.19898 1.21258 0.93014 0.91145 1.50636 0.92754 1.19145 0.93990 0.91247 0.97335 1.21721 0.98851 0.92803 1.00627 1.22162 0.96865 0.95873 0.96321 0.90108 1.22092 1.00310 0.92688 1.01390 1.23874 0.95413 1.00651 1.01228 1.87669 1.29639 1.11969 1.81335 1.24498 1.04203 0.89792 1.00672 0.92984 0.96363 0.96573 0.92888 0.93065 0.91060 0.90787 0.89763 0.88994 0.87281 0.89228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.77 13.29 55.43 0.74 -26.04 15 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 15 3 Si 0.89 21.53 29.54 -169.99 -5.02 16.51 15 4 H -0.28 -6.69 7.11 56.52 0.40 -6.28 15 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 15 6 H -0.27 -6.48 7.11 56.52 0.40 -6.08 15 7 C -0.52 -14.61 9.11 -34.44 -0.31 -14.92 15 8 H 0.05 1.48 7.74 -52.48 -0.41 1.07 15 9 C 0.02 0.50 4.81 -27.88 -0.13 0.36 15 10 C -0.10 -1.98 4.41 -26.73 -0.12 -2.10 15 11 C -0.09 -1.51 2.54 -89.51 -0.23 -1.74 15 12 H 0.08 1.39 8.14 -51.93 -0.42 0.97 15 13 C -0.13 -1.68 5.86 -26.39 -0.15 -1.84 15 14 C -0.06 -0.79 7.38 37.53 0.28 -0.51 15 15 S -0.33 -5.16 23.23 -107.50 -2.50 -7.66 15 16 C -0.04 -0.73 6.08 38.30 0.23 -0.49 15 17 H 0.26 7.36 8.31 -40.82 -0.34 7.02 15 18 H 0.02 0.48 7.19 -51.93 -0.37 0.10 15 19 H 0.02 0.43 8.14 -51.93 -0.42 0.01 15 20 H 0.05 1.02 8.14 -51.93 -0.42 0.60 15 21 H 0.05 0.98 8.10 -51.93 -0.42 0.56 15 22 H 0.07 0.91 7.80 -51.93 -0.41 0.51 15 23 H 0.07 0.90 8.14 -51.93 -0.42 0.48 15 24 H 0.08 0.94 8.14 -51.93 -0.42 0.52 15 25 H 0.09 1.01 8.14 -51.93 -0.42 0.59 15 26 H 0.11 1.90 7.78 -51.93 -0.40 1.50 15 27 H 0.09 1.45 8.07 -51.93 -0.42 1.03 15 LS Contribution 236.88 15.07 3.57 3.57 Total: -1.00 -29.35 236.88 -7.85 -37.20 By element: Atomic # 1 Polarization: 0.23 SS G_CDS: -4.10 Total: -3.87 kcal Atomic # 6 Polarization: -19.18 SS G_CDS: -0.53 Total: -19.71 kcal Atomic # 7 Polarization: -26.77 SS G_CDS: 0.74 Total: -26.04 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Atomic # 16 Polarization: -5.16 SS G_CDS: -2.50 Total: -7.66 kcal Total LS contribution 3.57 Total: 3.57 kcal Total: -29.35 -7.85 -37.20 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084233217.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.392 kcal (2) G-P(sol) polarization free energy of solvation -29.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds