Wall clock time and date at job start Mon Mar 30 2020 01:56:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31524 * 1 3 3 Si 1.86797 * 119.99908 * 2 1 4 4 H 1.48504 * 109.47066 * 270.00096 * 3 2 1 5 5 H 1.48500 * 109.47363 * 29.99810 * 3 2 1 6 6 H 1.48496 * 109.46896 * 150.00122 * 3 2 1 7 7 C 1.37875 * 119.99546 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99436 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00661 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47262 * 179.97438 * 9 7 2 11 11 C 1.52995 * 109.46888 * 180.02562 * 10 9 7 12 12 H 1.09004 * 109.60353 * 306.12604 * 11 10 9 13 13 C 1.52945 * 109.60257 * 185.99020 * 11 10 9 14 14 C 1.53707 * 112.49105 * 209.96738 * 13 11 10 15 15 S 1.83456 * 104.98437 * 2.86159 * 14 13 11 16 16 C 1.55150 * 109.60742 * 66.45226 * 11 10 9 17 17 H 0.96993 * 119.99849 * 0.02562 * 1 2 3 18 18 H 1.08997 * 109.47258 * 59.99598 * 9 7 2 19 19 H 1.09006 * 109.46755 * 299.99880 * 9 7 2 20 20 H 1.08997 * 109.47232 * 59.99681 * 10 9 7 21 21 H 1.09001 * 109.46782 * 299.99543 * 10 9 7 22 22 H 1.09004 * 108.88613 * 330.76095 * 13 11 10 23 23 H 1.09003 * 108.89102 * 89.17384 * 13 11 10 24 24 H 1.09003 * 110.33957 * 121.69773 * 14 13 11 25 25 H 1.08998 * 110.34337 * 243.94992 * 14 13 11 26 26 H 1.09002 * 111.13093 * 279.28098 * 16 11 10 27 27 H 1.08998 * 111.13063 * 43.41410 * 16 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2511 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4803 -4.9871 -0.0001 12 1 0.7729 -5.0013 0.8291 13 6 2.4646 -6.1480 0.1502 14 6 1.9724 -7.4295 -0.5411 15 16 0.3934 -6.9572 -1.3470 16 6 0.7147 -5.1456 -1.3402 17 1 -0.4849 0.8400 -0.0004 18 1 0.6247 -2.5572 -0.8896 19 1 0.6241 -2.5567 0.8904 20 1 2.8720 -3.6044 0.8905 21 1 2.8719 -3.6044 -0.8895 22 1 3.4213 -5.8579 -0.2842 23 1 2.6095 -6.3527 1.2110 24 1 2.6948 -7.7584 -1.2881 25 1 1.8024 -8.2156 0.1946 26 1 -0.2177 -4.5811 -1.3293 27 1 1.3379 -4.8539 -2.1856 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084233217.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:12 Heat of formation + Delta-G solvation = -48.067300 kcal Electronic energy + Delta-G solvation = -9461.861625 eV Core-core repulsion = 7729.855129 eV Total energy + Delta-G solvation = -1732.006495 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 186.077 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -38.32460 -35.21853 -32.70759 -29.92967 -27.41744 -25.32087 -22.47424 -20.85033 -18.51828 -17.34239 -16.77662 -16.40575 -15.31319 -14.83065 -14.60636 -14.31507 -13.52989 -13.24690 -13.04059 -12.85843 -12.77517 -12.31922 -12.17317 -11.71480 -11.47198 -11.26234 -11.11020 -10.72883 -10.53521 -8.74047 -8.19207 -6.30125 0.93565 1.40516 1.40747 1.41520 1.52505 2.41436 3.14344 3.62501 3.78720 4.05870 4.15349 4.28026 4.54804 4.63672 4.74823 4.79468 4.89764 4.96543 5.16367 5.29214 5.32686 5.53837 5.77209 5.87474 6.26201 6.87995 7.39403 8.92451 Molecular weight = 186.08amu Principal moments of inertia in cm(-1) A = 0.089844 B = 0.008141 C = 0.007698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 311.575168 B = 3438.762059 C = 3636.464565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.001 4.001 3 Si 0.963 3.037 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.262 1.262 7 C -0.543 4.543 8 H 0.061 0.939 9 C 0.023 3.977 10 C -0.087 4.087 11 C -0.087 4.087 12 H 0.068 0.932 13 C -0.121 4.121 14 C -0.050 4.050 15 S -0.360 6.360 16 C -0.044 4.044 17 H 0.263 0.737 18 H -0.003 1.003 19 H -0.013 1.013 20 H 0.059 0.941 21 H 0.057 0.943 22 H 0.083 0.917 23 H 0.091 0.909 24 H 0.104 0.896 25 H 0.113 0.887 26 H 0.087 0.913 27 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.599 -11.421 -0.460 12.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.198 4.198 3 Si 0.787 3.213 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.186 1.186 7 C -0.581 4.581 8 H 0.079 0.921 9 C -0.015 4.015 10 C -0.126 4.126 11 C -0.107 4.107 12 H 0.087 0.913 13 C -0.160 4.160 14 C -0.197 4.197 15 S -0.134 6.134 16 C -0.192 4.192 17 H 0.071 0.929 18 H 0.015 0.985 19 H 0.006 0.994 20 H 0.077 0.923 21 H 0.076 0.924 22 H 0.101 0.899 23 H 0.110 0.890 24 H 0.123 0.877 25 H 0.132 0.868 26 H 0.105 0.895 27 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 4.519 -12.012 -0.866 12.864 hybrid contribution 0.745 1.777 0.329 1.955 sum 5.264 -10.235 -0.536 11.522 Atomic orbital electron populations 1.70101 1.07826 1.27688 1.51872 1.25969 0.95709 1.03329 0.94831 0.85481 0.78731 0.78595 0.78457 1.19840 1.20947 1.18625 1.21750 0.93607 0.92508 1.50256 0.92102 1.19054 0.94491 0.93017 0.94893 1.21504 0.97672 0.92290 1.01148 1.22066 0.97067 0.95779 0.95795 0.91346 1.22006 0.99473 0.91597 1.02892 1.24013 0.93349 1.00577 1.01784 1.87778 1.32643 1.10806 1.82131 1.24361 1.03295 0.90684 1.00868 0.92865 0.98496 0.99418 0.92268 0.92419 0.89867 0.89000 0.87709 0.86828 0.89459 0.89069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.01 13.29 21.45 0.28 -56.72 15 2 C 0.00 -0.05 5.46 84.65 0.46 0.42 15 3 Si 0.96 44.04 29.54 68.60 2.03 46.07 15 4 H -0.27 -12.08 7.11 99.48 0.71 -11.37 15 5 H -0.28 -12.77 7.11 99.48 0.71 -12.07 15 6 H -0.26 -11.39 7.11 99.48 0.71 -10.68 15 7 C -0.54 -30.56 9.11 25.60 0.23 -30.33 15 8 H 0.06 3.26 7.74 -2.91 -0.02 3.24 15 9 C 0.02 1.16 4.81 29.85 0.14 1.31 15 10 C -0.09 -3.36 4.41 30.59 0.14 -3.23 15 11 C -0.09 -2.78 2.54 -10.08 -0.03 -2.80 15 12 H 0.07 2.36 8.14 -2.39 -0.02 2.34 15 13 C -0.12 -2.85 5.86 30.81 0.18 -2.67 15 14 C -0.05 -1.06 7.38 72.22 0.53 -0.53 15 15 S -0.36 -10.72 23.23 -56.49 -1.31 -12.03 15 16 C -0.04 -1.46 6.08 72.72 0.44 -1.02 15 17 H 0.26 15.08 8.31 -92.71 -0.77 14.31 15 18 H 0.00 -0.18 7.19 -2.39 -0.02 -0.20 15 19 H -0.01 -0.71 8.14 -2.38 -0.02 -0.73 15 20 H 0.06 2.20 8.14 -2.39 -0.02 2.18 15 21 H 0.06 2.14 8.10 -2.39 -0.02 2.13 15 22 H 0.08 1.81 7.80 -2.38 -0.02 1.79 15 23 H 0.09 1.88 8.14 -2.39 -0.02 1.87 15 24 H 0.10 1.89 8.14 -2.39 -0.02 1.87 15 25 H 0.11 2.01 8.14 -2.39 -0.02 1.99 15 26 H 0.09 3.21 7.78 -2.39 -0.02 3.19 15 27 H 0.09 2.93 8.07 -2.39 -0.02 2.92 15 Total: -1.00 -63.00 236.88 4.22 -58.78 By element: Atomic # 1 Polarization: 1.65 SS G_CDS: 1.12 Total: 2.77 kcal Atomic # 6 Polarization: -40.97 SS G_CDS: 2.10 Total: -38.86 kcal Atomic # 7 Polarization: -57.01 SS G_CDS: 0.28 Total: -56.72 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.07 kcal Atomic # 16 Polarization: -10.72 SS G_CDS: -1.31 Total: -12.03 kcal Total: -63.00 4.22 -58.78 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084233217.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.711 kcal (2) G-P(sol) polarization free energy of solvation -63.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds