Wall clock time and date at job start Mon Mar 30 2020 01:56:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00005 * 2 1 4 4 H 1.48506 * 109.46838 * 269.99383 * 3 2 1 5 5 H 1.48497 * 109.47419 * 29.99534 * 3 2 1 6 6 H 1.48499 * 109.47011 * 150.00096 * 3 2 1 7 7 C 1.37876 * 119.99563 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99683 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47466 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47060 * 180.02562 * 10 9 7 12 12 H 1.08993 * 108.83317 * 56.46858 * 11 10 9 13 13 C 1.52338 * 108.86730 * 175.00290 * 11 10 9 14 14 C 1.54251 * 112.59097 * 120.81414 * 13 11 10 15 15 S 1.83963 * 102.58041 * 24.53086 * 14 13 11 16 16 C 1.54256 * 108.86835 * 298.07252 * 11 10 9 17 17 H 0.97002 * 119.99731 * 0.02562 * 1 2 3 18 18 H 1.09002 * 109.47120 * 59.99671 * 9 7 2 19 19 H 1.08998 * 109.46862 * 300.00473 * 9 7 2 20 20 H 1.09002 * 109.47153 * 59.99773 * 10 9 7 21 21 H 1.09001 * 109.46832 * 299.99964 * 10 9 7 22 22 H 1.09005 * 108.86346 * 241.64066 * 13 11 10 23 23 H 1.09000 * 108.86628 * 0.13885 * 13 11 10 24 24 H 1.09002 * 110.78991 * 142.79745 * 14 13 11 25 25 H 1.08993 * 110.79302 * 266.06495 * 14 13 11 26 26 H 1.09006 * 110.79198 * 332.92923 * 16 11 10 27 27 H 1.09004 * 110.78898 * 96.38159 * 16 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4002 5 1 1.4467 2.6527 0.6999 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4800 -4.9871 -0.0001 12 1 0.8109 -5.0066 -0.8602 13 6 2.4774 -6.1318 -0.1257 14 6 2.4084 -7.1110 1.0642 15 16 0.6917 -6.8722 1.6807 16 6 0.6353 -5.0760 1.2875 17 1 -0.4850 0.8401 -0.0004 18 1 0.6246 -2.5571 -0.8897 19 1 0.6240 -2.5566 0.8902 20 1 2.8718 -3.6044 0.8905 21 1 2.8718 -3.6044 -0.8895 22 1 2.2714 -6.6794 -1.0454 23 1 3.4841 -5.7177 -0.1808 24 1 2.5600 -8.1373 0.7299 25 1 3.1378 -6.8431 1.8285 26 1 1.0874 -4.4904 2.0881 27 1 -0.3889 -4.7527 1.1014 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084233220.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:13 Heat of formation + Delta-G solvation = -30.526870 kcal Electronic energy + Delta-G solvation = -9490.071955 eV Core-core repulsion = 7758.826070 eV Total energy + Delta-G solvation = -1731.245885 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 186.077 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -37.01859 -33.20608 -31.01488 -28.39019 -25.81224 -23.82548 -20.84954 -19.25756 -16.59179 -15.89261 -15.40808 -14.47767 -14.22059 -13.47616 -12.69422 -12.54283 -12.18234 -11.66795 -11.58452 -11.27623 -11.01664 -10.82368 -10.48565 -10.22155 -9.86040 -9.53681 -9.28119 -9.02324 -8.36463 -7.52545 -6.01810 -4.04323 2.14676 2.57262 3.30500 3.37013 3.40086 4.44179 4.79435 4.98848 5.19608 5.33931 5.38126 5.51422 5.68347 5.85242 6.03542 6.20150 6.23716 6.33630 6.64339 6.80997 7.06941 7.64709 7.78389 7.97754 8.40475 9.02804 9.60017 11.09420 Molecular weight = 186.08amu Principal moments of inertia in cm(-1) A = 0.085465 B = 0.008300 C = 0.007888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 327.540107 B = 3372.523727 C = 3548.794077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.057 3.943 3 Si 0.891 3.109 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.522 4.522 8 H 0.054 0.946 9 C 0.019 3.981 10 C -0.104 4.104 11 C -0.095 4.095 12 H 0.078 0.922 13 C -0.121 4.121 14 C -0.060 4.060 15 S -0.337 6.337 16 C -0.039 4.039 17 H 0.260 0.740 18 H 0.015 0.985 19 H 0.019 0.981 20 H 0.050 0.950 21 H 0.052 0.948 22 H 0.069 0.931 23 H 0.075 0.925 24 H 0.097 0.903 25 H 0.085 0.915 26 H 0.093 0.907 27 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.887 -10.529 0.816 11.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.144 4.144 3 Si 0.719 3.281 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.560 4.560 8 H 0.072 0.928 9 C -0.018 4.018 10 C -0.143 4.143 11 C -0.116 4.116 12 H 0.096 0.904 13 C -0.160 4.160 14 C -0.208 4.208 15 S -0.111 6.111 16 C -0.187 4.187 17 H 0.070 0.930 18 H 0.034 0.966 19 H 0.037 0.963 20 H 0.069 0.931 21 H 0.070 0.930 22 H 0.087 0.913 23 H 0.094 0.906 24 H 0.115 0.885 25 H 0.104 0.896 26 H 0.111 0.889 27 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 2.909 -11.197 1.327 11.645 hybrid contribution 1.192 1.752 -0.491 2.176 sum 4.101 -9.445 0.836 10.331 Atomic orbital electron populations 1.69963 1.06048 1.26612 1.50831 1.25020 0.94834 0.99238 0.95309 0.86613 0.79870 0.83543 0.78100 1.20678 1.21208 1.19887 1.21260 0.93012 0.91161 1.50615 0.92769 1.19165 0.94036 0.91329 0.97314 1.21867 0.98817 0.93089 1.00538 1.21786 0.96395 0.96225 0.97150 0.90385 1.22136 1.00872 0.95477 0.97543 1.24083 0.94278 1.02579 0.99854 1.87787 1.21711 1.16538 1.85060 1.24325 1.04255 0.90052 1.00059 0.92991 0.96643 0.96291 0.93127 0.92971 0.91254 0.90642 0.88494 0.89632 0.88877 0.87803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.77 13.29 55.43 0.74 -26.03 15 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 15 3 Si 0.89 21.55 29.54 -169.99 -5.02 16.53 15 4 H -0.28 -6.69 7.11 56.52 0.40 -6.29 15 5 H -0.29 -6.87 7.11 56.52 0.40 -6.47 15 6 H -0.27 -6.48 7.11 56.52 0.40 -6.08 15 7 C -0.52 -14.63 9.11 -34.44 -0.31 -14.94 15 8 H 0.05 1.48 7.74 -52.49 -0.41 1.07 15 9 C 0.02 0.47 4.75 -27.89 -0.13 0.33 15 10 C -0.10 -2.05 4.10 -26.73 -0.11 -2.16 15 11 C -0.10 -1.57 2.67 -90.30 -0.24 -1.81 15 12 H 0.08 1.32 8.14 -51.93 -0.42 0.90 15 13 C -0.12 -1.63 5.98 -26.41 -0.16 -1.79 15 14 C -0.06 -0.75 7.46 37.81 0.28 -0.47 15 15 S -0.34 -5.24 23.27 -107.50 -2.50 -7.74 15 16 C -0.04 -0.66 5.75 37.81 0.22 -0.44 15 17 H 0.26 7.36 8.31 -40.82 -0.34 7.02 15 18 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 15 19 H 0.02 0.49 7.19 -51.93 -0.37 0.12 15 20 H 0.05 0.98 8.10 -51.93 -0.42 0.56 15 21 H 0.05 1.01 8.14 -51.93 -0.42 0.58 15 22 H 0.07 0.85 8.14 -51.93 -0.42 0.43 15 23 H 0.07 0.96 7.51 -51.93 -0.39 0.57 15 24 H 0.10 1.03 8.14 -51.93 -0.42 0.61 15 25 H 0.09 1.01 8.14 -51.93 -0.42 0.59 15 26 H 0.09 1.61 7.76 -51.93 -0.40 1.21 15 27 H 0.10 1.77 8.14 -51.93 -0.42 1.35 15 LS Contribution 236.29 15.07 3.56 3.56 Total: -1.00 -29.41 236.29 -7.86 -37.27 By element: Atomic # 1 Polarization: 0.24 SS G_CDS: -4.09 Total: -3.85 kcal Atomic # 6 Polarization: -19.18 SS G_CDS: -0.55 Total: -19.74 kcal Atomic # 7 Polarization: -26.77 SS G_CDS: 0.74 Total: -26.03 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Atomic # 16 Polarization: -5.24 SS G_CDS: -2.50 Total: -7.74 kcal Total LS contribution 3.56 Total: 3.56 kcal Total: -29.41 -7.86 -37.27 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084233220.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.745 kcal (2) G-P(sol) polarization free energy of solvation -29.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds