Wall clock time and date at job start Mon Mar 30 2020 01:56:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00005 * 2 1 4 4 H 1.48506 * 109.46838 * 269.99383 * 3 2 1 5 5 H 1.48497 * 109.47419 * 29.99534 * 3 2 1 6 6 H 1.48499 * 109.47011 * 150.00096 * 3 2 1 7 7 C 1.37876 * 119.99563 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99683 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47466 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47060 * 180.02562 * 10 9 7 12 12 H 1.08993 * 108.83317 * 56.46858 * 11 10 9 13 13 C 1.52338 * 108.86730 * 175.00290 * 11 10 9 14 14 C 1.54251 * 112.59097 * 120.81414 * 13 11 10 15 15 S 1.83963 * 102.58041 * 24.53086 * 14 13 11 16 16 C 1.54256 * 108.86835 * 298.07252 * 11 10 9 17 17 H 0.97002 * 119.99731 * 0.02562 * 1 2 3 18 18 H 1.09002 * 109.47120 * 59.99671 * 9 7 2 19 19 H 1.08998 * 109.46862 * 300.00473 * 9 7 2 20 20 H 1.09002 * 109.47153 * 59.99773 * 10 9 7 21 21 H 1.09001 * 109.46832 * 299.99964 * 10 9 7 22 22 H 1.09005 * 108.86346 * 241.64066 * 13 11 10 23 23 H 1.09000 * 108.86628 * 0.13885 * 13 11 10 24 24 H 1.09002 * 110.78991 * 142.79745 * 14 13 11 25 25 H 1.08993 * 110.79302 * 266.06495 * 14 13 11 26 26 H 1.09006 * 110.79198 * 332.92923 * 16 11 10 27 27 H 1.09004 * 110.78898 * 96.38159 * 16 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4002 5 1 1.4467 2.6527 0.6999 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4800 -4.9871 -0.0001 12 1 0.8109 -5.0066 -0.8602 13 6 2.4774 -6.1318 -0.1257 14 6 2.4084 -7.1110 1.0642 15 16 0.6917 -6.8722 1.6807 16 6 0.6353 -5.0760 1.2875 17 1 -0.4850 0.8401 -0.0004 18 1 0.6246 -2.5571 -0.8897 19 1 0.6240 -2.5566 0.8902 20 1 2.8718 -3.6044 0.8905 21 1 2.8718 -3.6044 -0.8895 22 1 2.2714 -6.6794 -1.0454 23 1 3.4841 -5.7177 -0.1808 24 1 2.5600 -8.1373 0.7299 25 1 3.1378 -6.8431 1.8285 26 1 1.0874 -4.4904 2.0881 27 1 -0.3889 -4.7527 1.1014 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084233220.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:13 Heat of formation + Delta-G solvation = -46.825426 kcal Electronic energy + Delta-G solvation = -9490.778713 eV Core-core repulsion = 7758.826070 eV Total energy + Delta-G solvation = -1731.952644 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 186.077 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -38.41456 -35.19702 -32.64028 -29.92666 -27.44897 -25.44174 -22.55105 -20.62865 -18.51316 -17.37187 -16.77644 -16.39030 -15.51604 -14.83862 -14.41779 -14.19346 -13.67177 -13.25537 -12.95136 -12.82092 -12.78277 -12.31700 -12.28628 -11.76537 -11.45920 -11.26762 -10.96801 -10.72237 -10.53998 -8.75713 -8.19536 -6.30351 0.96474 1.37843 1.40171 1.41078 1.52101 2.41109 3.14002 3.60282 3.82995 4.02834 4.17873 4.31556 4.52395 4.64128 4.74859 4.78170 4.92691 5.00067 5.18346 5.31468 5.33039 5.53339 5.77344 5.87290 6.26236 6.87726 7.39115 8.92041 Molecular weight = 186.08amu Principal moments of inertia in cm(-1) A = 0.085465 B = 0.008300 C = 0.007888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 327.540107 B = 3372.523727 C = 3548.794077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.000 4.000 3 Si 0.962 3.038 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.263 1.263 7 C -0.544 4.544 8 H 0.060 0.940 9 C 0.021 3.979 10 C -0.091 4.091 11 C -0.089 4.089 12 H 0.070 0.930 13 C -0.118 4.118 14 C -0.047 4.047 15 S -0.359 6.359 16 C -0.041 4.041 17 H 0.263 0.737 18 H -0.012 1.012 19 H -0.002 1.002 20 H 0.054 0.946 21 H 0.058 0.942 22 H 0.086 0.914 23 H 0.088 0.912 24 H 0.125 0.875 25 H 0.097 0.903 26 H 0.082 0.918 27 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.694 -11.170 0.664 12.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.198 4.198 3 Si 0.787 3.213 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.187 1.187 7 C -0.582 4.582 8 H 0.078 0.922 9 C -0.016 4.016 10 C -0.129 4.129 11 C -0.109 4.109 12 H 0.088 0.912 13 C -0.156 4.156 14 C -0.194 4.194 15 S -0.133 6.133 16 C -0.189 4.189 17 H 0.071 0.929 18 H 0.006 0.994 19 H 0.016 0.984 20 H 0.073 0.927 21 H 0.077 0.923 22 H 0.105 0.895 23 H 0.107 0.893 24 H 0.143 0.857 25 H 0.116 0.884 26 H 0.100 0.900 27 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 4.730 -11.854 1.175 12.817 hybrid contribution 0.612 1.919 -0.441 2.062 sum 5.341 -9.935 0.734 11.303 Atomic orbital electron populations 1.70098 1.07802 1.27681 1.51859 1.25961 0.95714 1.03301 0.94828 0.85489 0.78733 0.78629 0.78461 1.19824 1.20920 1.18671 1.21751 0.93582 0.92565 1.50278 0.92188 1.19077 0.94529 0.93021 0.94937 1.21669 0.97668 0.92642 1.00955 1.21732 0.96632 0.95967 0.96598 0.91191 1.22058 1.00263 0.94556 0.98749 1.24239 0.91734 1.03933 0.99530 1.87869 1.24972 1.14942 1.85493 1.24171 1.03469 0.91240 0.99972 0.92860 0.99382 0.98377 0.92704 0.92315 0.89536 0.89331 0.85706 0.88394 0.89958 0.89292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.91 13.29 21.45 0.28 -56.62 15 2 C 0.00 -0.03 5.46 84.65 0.46 0.44 15 3 Si 0.96 44.07 29.54 68.60 2.03 46.10 15 4 H -0.27 -12.08 7.11 99.48 0.71 -11.37 15 5 H -0.28 -12.77 7.11 99.48 0.71 -12.07 15 6 H -0.26 -11.44 7.11 99.48 0.71 -10.74 15 7 C -0.54 -30.64 9.11 25.60 0.23 -30.40 15 8 H 0.06 3.23 7.74 -2.91 -0.02 3.21 15 9 C 0.02 1.10 4.75 29.85 0.14 1.25 15 10 C -0.09 -3.51 4.10 30.59 0.13 -3.38 15 11 C -0.09 -2.85 2.67 -10.59 -0.03 -2.88 15 12 H 0.07 2.35 8.14 -2.39 -0.02 2.33 15 13 C -0.12 -2.79 5.98 30.80 0.18 -2.60 15 14 C -0.05 -1.02 7.46 72.41 0.54 -0.48 15 15 S -0.36 -10.67 23.27 -56.49 -1.31 -11.98 15 16 C -0.04 -1.37 5.75 72.41 0.42 -0.95 15 17 H 0.26 15.06 8.31 -92.71 -0.77 14.29 15 18 H -0.01 -0.69 8.14 -2.39 -0.02 -0.71 15 19 H 0.00 -0.12 7.19 -2.39 -0.02 -0.13 15 20 H 0.05 2.07 8.10 -2.39 -0.02 2.05 15 21 H 0.06 2.18 8.14 -2.39 -0.02 2.17 15 22 H 0.09 1.80 8.14 -2.38 -0.02 1.79 15 23 H 0.09 1.93 7.51 -2.39 -0.02 1.91 15 24 H 0.12 2.09 8.14 -2.39 -0.02 2.07 15 25 H 0.10 1.94 8.14 -2.39 -0.02 1.92 15 26 H 0.08 2.90 7.76 -2.38 -0.02 2.88 15 27 H 0.09 3.19 8.14 -2.39 -0.02 3.17 15 Total: -1.00 -62.95 236.29 4.19 -58.76 By element: Atomic # 1 Polarization: 1.64 SS G_CDS: 1.12 Total: 2.76 kcal Atomic # 6 Polarization: -41.08 SS G_CDS: 2.08 Total: -39.01 kcal Atomic # 7 Polarization: -56.91 SS G_CDS: 0.28 Total: -56.62 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.10 kcal Atomic # 16 Polarization: -10.67 SS G_CDS: -1.31 Total: -11.98 kcal Total: -62.95 4.19 -58.76 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084233220.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.931 kcal (2) G-P(sol) polarization free energy of solvation -62.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds