Wall clock time and date at job start Mon Mar 30 2020 01:56:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99964 * 359.97438 * 7 2 1 9 9 C 1.50696 * 119.99717 * 180.02562 * 7 2 1 10 10 C 1.53002 * 109.46997 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47535 * 179.97438 * 10 9 7 12 12 H 1.09000 * 110.76047 * 57.03425 * 11 10 9 13 13 C 1.55135 * 110.85934 * 180.76147 * 11 10 9 14 14 C 1.53856 * 106.89811 * 160.29163 * 13 11 10 15 15 C 1.54271 * 108.92725 * 312.74246 * 14 13 11 16 16 S 1.83095 * 104.65011 * 27.95479 * 15 14 13 17 17 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 18 18 H 1.09005 * 109.47076 * 299.99625 * 9 7 2 19 19 H 1.09002 * 109.47753 * 59.99866 * 9 7 2 20 20 H 1.09005 * 109.46767 * 299.99649 * 10 9 7 21 21 H 1.09002 * 109.47113 * 59.99309 * 10 9 7 22 22 H 1.09004 * 109.97311 * 279.64972 * 13 11 10 23 23 H 1.08990 * 109.97496 * 40.93085 * 13 11 10 24 24 H 1.09002 * 109.60981 * 192.82255 * 14 13 11 25 25 H 1.09006 * 109.61178 * 72.66602 * 14 13 11 26 26 H 1.08995 * 110.40579 * 269.16092 * 15 14 13 27 27 H 1.09006 * 110.50005 * 146.79903 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0215 -2.6366 -0.0014 11 6 5.5515 -2.6367 -0.0014 12 1 5.9379 -2.0829 0.8542 13 6 6.1038 -4.0862 -0.0221 14 6 7.5581 -4.0037 -0.5175 15 6 7.6092 -3.1077 -1.7723 16 16 6.2046 -1.9504 -1.5725 17 1 -0.4850 0.8401 0.0004 18 1 3.8752 -0.6797 -0.8895 19 1 3.8746 -0.6808 0.8905 20 1 3.6579 -3.1514 0.8880 21 1 3.6585 -3.1495 -0.8920 22 1 6.0759 -4.5097 0.9819 23 1 5.5132 -4.7000 -0.7020 24 1 7.9171 -5.0024 -0.7662 25 1 8.1869 -3.5758 0.2634 26 1 7.4818 -3.7079 -2.6732 27 1 8.5506 -2.5596 -1.8119 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084233226.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:06 Heat of formation + Delta-G solvation = -27.592250 kcal Electronic energy + Delta-G solvation = -9458.810058 eV Core-core repulsion = 7727.691428 eV Total energy + Delta-G solvation = -1731.118631 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 186.077 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -36.45613 -33.79271 -31.83714 -28.64302 -25.60561 -22.96781 -20.57597 -20.19786 -16.76204 -16.36463 -15.27641 -14.32141 -14.04164 -13.88578 -13.01389 -12.76849 -12.20319 -11.68786 -11.59687 -11.44974 -11.10094 -10.77837 -10.70650 -10.04331 -9.85590 -9.54065 -9.32956 -9.11017 -8.48071 -7.32356 -5.99817 -3.97318 2.13303 2.76042 3.35851 3.43286 3.51234 4.51380 4.68934 4.75107 4.98776 5.19251 5.34601 5.37295 5.61259 5.66899 5.73712 5.89772 5.94434 6.14147 6.39398 6.58234 6.89527 7.33915 7.48756 7.84236 8.57813 9.04668 9.63355 11.13634 Molecular weight = 186.08amu Principal moments of inertia in cm(-1) A = 0.068929 B = 0.010191 C = 0.009366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 406.119593 B = 2746.930140 C = 2988.818663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.067 3.933 3 Si 0.876 3.124 4 H -0.278 1.278 5 H -0.262 1.262 6 H -0.288 1.288 7 C -0.519 4.519 8 H 0.071 0.929 9 C -0.014 4.014 10 C -0.086 4.086 11 C -0.034 4.034 12 H 0.091 0.909 13 C -0.127 4.127 14 C -0.127 4.127 15 C -0.086 4.086 16 S -0.284 6.284 17 H 0.262 0.738 18 H 0.023 0.977 19 H 0.010 0.990 20 H 0.066 0.934 21 H 0.066 0.934 22 H 0.081 0.919 23 H 0.078 0.922 24 H 0.076 0.924 25 H 0.070 0.930 26 H 0.086 0.914 27 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.788 -6.787 -0.545 16.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.134 4.134 3 Si 0.703 3.297 4 H -0.203 1.203 5 H -0.187 1.187 6 H -0.214 1.214 7 C -0.556 4.556 8 H 0.090 0.910 9 C -0.052 4.052 10 C -0.125 4.125 11 C -0.163 4.163 12 H 0.110 0.890 13 C -0.166 4.166 14 C -0.166 4.166 15 C -0.234 4.234 16 S -0.059 6.059 17 H 0.072 0.928 18 H 0.042 0.958 19 H 0.028 0.972 20 H 0.084 0.916 21 H 0.084 0.916 22 H 0.099 0.901 23 H 0.097 0.903 24 H 0.094 0.906 25 H 0.089 0.911 26 H 0.105 0.895 27 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 14.284 -5.756 -1.237 15.449 hybrid contribution 0.766 0.035 0.709 1.044 sum 15.049 -5.722 -0.528 16.109 Atomic orbital electron populations 1.69919 1.06295 1.26834 1.51374 1.25009 0.94705 0.99151 0.94528 0.86813 0.80690 0.83644 0.78505 1.20346 1.18670 1.21365 1.21122 0.89422 0.94449 1.50654 0.91046 1.19611 0.97163 0.91911 0.96494 1.21479 0.88229 1.00865 1.01930 1.24283 1.01000 0.96047 0.94949 0.89048 1.22697 0.94914 0.96453 1.02532 1.22274 0.97727 1.00069 0.96495 1.23965 0.99576 0.98980 1.00916 1.87978 1.35638 1.47398 1.34861 0.92795 0.95837 0.97216 0.91551 0.91565 0.90093 0.90296 0.90563 0.91123 0.89531 0.89406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.59 13.96 55.43 0.77 -27.82 15 2 C 0.07 2.01 5.47 -17.82 -0.10 1.92 15 3 Si 0.88 22.60 27.47 -169.99 -4.67 17.93 15 4 H -0.28 -6.97 7.11 56.52 0.40 -6.57 15 5 H -0.26 -6.66 6.54 56.52 0.37 -6.29 15 6 H -0.29 -7.32 7.11 56.52 0.40 -6.92 15 7 C -0.52 -15.22 9.66 -34.44 -0.33 -15.56 15 8 H 0.07 2.23 7.99 -52.49 -0.42 1.81 15 9 C -0.01 -0.36 3.90 -27.88 -0.11 -0.46 15 10 C -0.09 -1.73 4.74 -26.73 -0.13 -1.86 15 11 C -0.03 -0.57 3.24 -25.60 -0.08 -0.65 15 12 H 0.09 1.48 8.14 -51.93 -0.42 1.06 15 13 C -0.13 -1.60 5.89 -25.16 -0.15 -1.75 15 14 C -0.13 -1.36 6.39 -25.62 -0.16 -1.53 15 15 C -0.09 -1.05 7.34 37.82 0.28 -0.77 15 16 S -0.28 -4.95 21.74 -107.50 -2.34 -7.29 15 17 H 0.26 7.75 8.31 -40.82 -0.34 7.41 15 18 H 0.02 0.61 6.36 -51.93 -0.33 0.28 15 19 H 0.01 0.24 7.57 -51.93 -0.39 -0.16 15 20 H 0.07 1.28 8.14 -51.93 -0.42 0.85 15 21 H 0.07 1.36 8.14 -51.93 -0.42 0.94 15 22 H 0.08 0.89 8.14 -51.93 -0.42 0.47 15 23 H 0.08 1.01 8.07 -51.93 -0.42 0.59 15 24 H 0.08 0.66 8.14 -51.93 -0.42 0.24 15 25 H 0.07 0.71 8.14 -51.93 -0.42 0.28 15 26 H 0.09 0.97 8.14 -51.93 -0.42 0.55 15 27 H 0.09 0.96 8.14 -51.93 -0.42 0.53 15 LS Contribution 233.99 15.07 3.53 3.53 Total: -1.00 -31.63 233.99 -7.60 -39.23 By element: Atomic # 1 Polarization: -0.81 SS G_CDS: -4.11 Total: -4.92 kcal Atomic # 6 Polarization: -19.88 SS G_CDS: -0.78 Total: -20.66 kcal Atomic # 7 Polarization: -28.59 SS G_CDS: 0.77 Total: -27.82 kcal Atomic # 14 Polarization: 22.60 SS G_CDS: -4.67 Total: 17.93 kcal Atomic # 16 Polarization: -4.95 SS G_CDS: -2.34 Total: -7.29 kcal Total LS contribution 3.53 Total: 3.53 kcal Total: -31.63 -7.60 -39.23 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084233226.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.637 kcal (2) G-P(sol) polarization free energy of solvation -31.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds