Wall clock time and date at job start Mon Mar 30 2020 01:56:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99964 * 359.97438 * 7 2 1 9 9 C 1.50696 * 119.99717 * 180.02562 * 7 2 1 10 10 C 1.53002 * 109.46997 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47535 * 179.97438 * 10 9 7 12 12 H 1.09000 * 110.76047 * 57.03425 * 11 10 9 13 13 C 1.55135 * 110.85934 * 180.76147 * 11 10 9 14 14 C 1.53856 * 106.89811 * 160.29163 * 13 11 10 15 15 C 1.54271 * 108.92725 * 312.74246 * 14 13 11 16 16 S 1.83095 * 104.65011 * 27.95479 * 15 14 13 17 17 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 18 18 H 1.09005 * 109.47076 * 299.99625 * 9 7 2 19 19 H 1.09002 * 109.47753 * 59.99866 * 9 7 2 20 20 H 1.09005 * 109.46767 * 299.99649 * 10 9 7 21 21 H 1.09002 * 109.47113 * 59.99309 * 10 9 7 22 22 H 1.09004 * 109.97311 * 279.64972 * 13 11 10 23 23 H 1.08990 * 109.97496 * 40.93085 * 13 11 10 24 24 H 1.09002 * 109.60981 * 192.82255 * 14 13 11 25 25 H 1.09006 * 109.61178 * 72.66602 * 14 13 11 26 26 H 1.08995 * 110.40579 * 269.16092 * 15 14 13 27 27 H 1.09006 * 110.50005 * 146.79903 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0215 -2.6366 -0.0014 11 6 5.5515 -2.6367 -0.0014 12 1 5.9379 -2.0829 0.8542 13 6 6.1038 -4.0862 -0.0221 14 6 7.5581 -4.0037 -0.5175 15 6 7.6092 -3.1077 -1.7723 16 16 6.2046 -1.9504 -1.5725 17 1 -0.4850 0.8401 0.0004 18 1 3.8752 -0.6797 -0.8895 19 1 3.8746 -0.6808 0.8905 20 1 3.6579 -3.1514 0.8880 21 1 3.6585 -3.1495 -0.8920 22 1 6.0759 -4.5097 0.9819 23 1 5.5132 -4.7000 -0.7020 24 1 7.9171 -5.0024 -0.7662 25 1 8.1869 -3.5758 0.2634 26 1 7.4818 -3.7079 -2.6732 27 1 8.5506 -2.5596 -1.8119 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084233226.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:06 Heat of formation + Delta-G solvation = -46.944692 kcal Electronic energy + Delta-G solvation = -9459.649243 eV Core-core repulsion = 7727.691428 eV Total energy + Delta-G solvation = -1731.957815 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 186.077 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -37.66889 -35.57515 -33.77076 -30.23047 -27.08144 -24.49472 -22.04868 -21.61801 -18.94645 -17.65089 -16.44906 -16.35634 -15.38841 -15.08447 -14.87368 -14.25882 -13.79230 -13.29526 -13.07435 -12.86467 -12.47738 -12.30240 -11.87681 -11.69207 -11.64367 -11.45875 -11.25358 -10.81232 -10.59010 -8.66368 -8.32321 -6.35425 0.95456 1.30980 1.34284 1.47592 1.61349 2.33691 3.03292 3.64950 3.81375 4.00645 4.14876 4.31470 4.42219 4.61347 4.68868 4.78372 4.91286 4.99027 5.02176 5.07734 5.24458 5.44525 5.54102 5.64352 6.25384 6.71844 7.29218 8.84500 Molecular weight = 186.08amu Principal moments of inertia in cm(-1) A = 0.068929 B = 0.010191 C = 0.009366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 406.119593 B = 2746.930140 C = 2988.818663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C 0.007 3.993 3 Si 0.945 3.055 4 H -0.262 1.262 5 H -0.257 1.257 6 H -0.281 1.281 7 C -0.531 4.531 8 H 0.035 0.965 9 C -0.009 4.009 10 C -0.079 4.079 11 C -0.023 4.023 12 H 0.096 0.904 13 C -0.122 4.122 14 C -0.121 4.121 15 C -0.063 4.063 16 S -0.375 6.375 17 H 0.267 0.733 18 H 0.013 0.987 19 H 0.015 0.985 20 H 0.072 0.928 21 H 0.053 0.947 22 H 0.103 0.897 23 H 0.074 0.926 24 H 0.107 0.893 25 H 0.083 0.917 26 H 0.097 0.903 27 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.417 -7.184 -0.116 18.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.189 4.189 3 Si 0.769 3.231 4 H -0.187 1.187 5 H -0.181 1.181 6 H -0.206 1.206 7 C -0.569 4.569 8 H 0.054 0.946 9 C -0.046 4.046 10 C -0.118 4.118 11 C -0.151 4.151 12 H 0.114 0.886 13 C -0.161 4.161 14 C -0.159 4.159 15 C -0.211 4.211 16 S -0.150 6.150 17 H 0.076 0.924 18 H 0.032 0.968 19 H 0.033 0.967 20 H 0.090 0.910 21 H 0.071 0.929 22 H 0.121 0.879 23 H 0.093 0.907 24 H 0.125 0.875 25 H 0.101 0.899 26 H 0.116 0.884 27 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 16.923 -6.169 -0.804 18.030 hybrid contribution -0.081 0.066 0.545 0.555 sum 16.842 -6.103 -0.259 17.915 Atomic orbital electron populations 1.70057 1.08100 1.28128 1.52747 1.25949 0.95578 1.03270 0.94145 0.85719 0.79286 0.78725 0.79361 1.18658 1.18095 1.20634 1.21492 0.91991 0.93223 1.50217 0.94618 1.19514 0.93983 0.95109 0.96020 1.21299 0.91346 0.97580 1.01587 1.24160 0.97946 0.98885 0.94110 0.88553 1.22701 0.96044 0.93392 1.03946 1.22284 0.96318 1.01406 0.95866 1.24095 0.97005 0.97632 1.02380 1.88238 1.39635 1.50710 1.36424 0.92437 0.96836 0.96716 0.90976 0.92870 0.87882 0.90710 0.87483 0.89860 0.88395 0.87675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.33 13.96 21.45 0.30 -61.03 15 2 C 0.01 0.45 5.47 84.66 0.46 0.92 15 3 Si 0.95 46.86 27.47 68.60 1.88 48.74 15 4 H -0.26 -12.25 7.11 99.48 0.71 -11.54 15 5 H -0.26 -12.42 6.54 99.48 0.65 -11.77 15 6 H -0.28 -13.51 7.11 99.48 0.71 -12.80 15 7 C -0.53 -32.01 9.66 25.60 0.25 -31.77 15 8 H 0.04 2.33 7.99 -2.91 -0.02 2.30 15 9 C -0.01 -0.44 3.90 29.85 0.12 -0.32 15 10 C -0.08 -3.18 4.74 30.59 0.14 -3.03 15 11 C -0.02 -0.72 3.24 31.32 0.10 -0.62 15 12 H 0.10 2.91 8.14 -2.39 -0.02 2.89 15 13 C -0.12 -2.68 5.89 31.61 0.19 -2.50 15 14 C -0.12 -2.04 6.39 31.31 0.20 -1.84 15 15 C -0.06 -1.34 7.34 72.41 0.53 -0.80 15 16 S -0.38 -12.65 21.74 -56.49 -1.23 -13.88 15 17 H 0.27 16.02 8.31 -92.71 -0.77 15.25 15 18 H 0.01 0.70 6.36 -2.38 -0.02 0.68 15 19 H 0.01 0.71 7.57 -2.39 -0.02 0.69 15 20 H 0.07 2.75 8.14 -2.38 -0.02 2.73 15 21 H 0.05 2.23 8.14 -2.39 -0.02 2.21 15 22 H 0.10 1.85 8.14 -2.38 -0.02 1.84 15 23 H 0.07 1.72 8.07 -2.39 -0.02 1.70 15 24 H 0.11 1.26 8.14 -2.39 -0.02 1.24 15 25 H 0.08 1.25 8.14 -2.38 -0.02 1.23 15 26 H 0.10 1.86 8.14 -2.39 -0.02 1.84 15 27 H 0.10 1.89 8.14 -2.38 -0.02 1.87 15 Total: -1.00 -69.77 233.99 4.01 -65.76 By element: Atomic # 1 Polarization: -0.69 SS G_CDS: 1.06 Total: 0.37 kcal Atomic # 6 Polarization: -41.95 SS G_CDS: 1.99 Total: -39.95 kcal Atomic # 7 Polarization: -61.33 SS G_CDS: 0.30 Total: -61.03 kcal Atomic # 14 Polarization: 46.86 SS G_CDS: 1.88 Total: 48.74 kcal Atomic # 16 Polarization: -12.65 SS G_CDS: -1.23 Total: -13.88 kcal Total: -69.77 4.01 -65.76 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084233226.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.814 kcal (2) G-P(sol) polarization free energy of solvation -69.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds