Wall clock time and date at job start Mon Mar 30 2020 01:56:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86801 * 120.00400 * 2 1 4 4 H 1.48496 * 109.47460 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47053 * 300.00341 * 3 2 1 6 6 H 1.48499 * 109.46869 * 60.00187 * 3 2 1 7 7 C 1.37879 * 119.99870 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99914 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00185 * 359.97438 * 7 2 1 10 10 C 1.52994 * 109.47504 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47323 * 180.02562 * 10 9 7 12 12 H 1.08994 * 111.02599 * 302.21792 * 11 10 9 13 13 C 1.55159 * 111.13364 * 177.98125 * 11 10 9 14 14 C 1.52934 * 108.96139 * 200.64976 * 13 11 10 15 15 C 1.53707 * 112.49291 * 30.10136 * 14 13 11 16 16 S 1.83400 * 104.96782 * 357.17229 * 15 14 13 17 17 H 0.96997 * 119.99685 * 359.97438 * 1 2 3 18 18 H 1.09007 * 109.46960 * 60.00411 * 9 7 2 19 19 H 1.09002 * 109.47490 * 300.00737 * 9 7 2 20 20 H 1.09007 * 109.47137 * 60.00540 * 10 9 7 21 21 H 1.09002 * 109.47315 * 300.00803 * 10 9 7 22 22 H 1.08999 * 109.60347 * 80.71788 * 13 11 10 23 23 H 1.09004 * 109.59880 * 320.58365 * 13 11 10 24 24 H 1.08996 * 108.88892 * 269.30259 * 14 13 11 25 25 H 1.08999 * 108.77383 * 150.81467 * 14 13 11 26 26 H 1.08999 * 110.34351 * 238.30429 * 15 14 13 27 27 H 1.08996 * 110.43289 * 116.09271 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2124 6 1 1.8905 2.3963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2451 -3.6621 -0.0005 11 6 1.4801 -4.9871 -0.0012 12 1 0.8146 -5.0548 0.8593 13 6 2.4530 -6.1947 -0.0522 14 6 1.6956 -7.4218 -0.5617 15 6 0.5562 -7.0516 -1.5247 16 16 0.5553 -5.2183 -1.5749 17 1 -0.4849 0.8400 0.0004 18 1 0.6240 -2.5567 -0.8904 19 1 0.6245 -2.5571 0.8896 20 1 2.8718 -3.6045 0.8896 21 1 2.8719 -3.6044 -0.8904 22 1 2.8417 -6.3936 0.9465 23 1 3.2801 -5.9697 -0.7255 24 1 1.2773 -7.9573 0.2906 25 1 2.3964 -8.0766 -1.0795 26 1 -0.3963 -7.4206 -1.1444 27 1 0.7500 -7.4577 -2.5174 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084233230.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:07 Heat of formation + Delta-G solvation = -29.835668 kcal Electronic energy + Delta-G solvation = -9405.356979 eV Core-core repulsion = 7674.141067 eV Total energy + Delta-G solvation = -1731.215912 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 186.077 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -36.30740 -33.73020 -31.73066 -28.27185 -25.50649 -23.19665 -20.42676 -20.14251 -16.42122 -16.17005 -15.12081 -14.45244 -14.13641 -13.85972 -12.71571 -12.52749 -12.21201 -11.56754 -11.40916 -11.21289 -10.88444 -10.68287 -10.44756 -10.42054 -9.97182 -9.38698 -9.13595 -9.00980 -8.29444 -7.20002 -5.94551 -3.97128 2.28345 2.84770 3.34303 3.41451 3.45555 4.49404 4.75029 4.84310 5.14470 5.27589 5.41094 5.48034 5.69753 5.78724 5.85426 6.02441 6.09478 6.24633 6.52771 6.76307 7.09673 7.73366 7.88224 8.05920 8.46448 9.10071 9.66372 11.16734 Molecular weight = 186.08amu Principal moments of inertia in cm(-1) A = 0.087190 B = 0.008757 C = 0.008279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 321.060512 B = 3196.763726 C = 3381.385798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.057 3.943 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.520 4.520 8 H 0.055 0.945 9 C 0.020 3.980 10 C -0.094 4.094 11 C -0.028 4.028 12 H 0.090 0.910 13 C -0.125 4.125 14 C -0.125 4.125 15 C -0.087 4.087 16 S -0.278 6.278 17 H 0.259 0.741 18 H 0.025 0.975 19 H 0.015 0.985 20 H 0.061 0.939 21 H 0.060 0.940 22 H 0.075 0.925 23 H 0.076 0.924 24 H 0.065 0.935 25 H 0.071 0.929 26 H 0.082 0.918 27 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.186 -12.914 -0.343 13.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.144 4.144 3 Si 0.719 3.281 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.559 4.559 8 H 0.073 0.927 9 C -0.017 4.017 10 C -0.133 4.133 11 C -0.156 4.156 12 H 0.108 0.892 13 C -0.165 4.165 14 C -0.164 4.164 15 C -0.235 4.235 16 S -0.052 6.052 17 H 0.069 0.931 18 H 0.044 0.956 19 H 0.033 0.967 20 H 0.080 0.920 21 H 0.078 0.922 22 H 0.094 0.906 23 H 0.094 0.906 24 H 0.084 0.916 25 H 0.089 0.911 26 H 0.101 0.899 27 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 2.567 -12.028 -1.156 12.353 hybrid contribution 0.773 0.109 0.814 1.128 sum 3.340 -11.919 -0.342 12.383 Atomic orbital electron populations 1.69987 1.06042 1.26403 1.50831 1.25022 0.94824 0.99210 0.95377 0.86554 0.80110 0.83907 0.77546 1.19751 1.21015 1.21059 1.21268 0.92999 0.91060 1.50524 0.92665 1.19146 0.93883 0.91030 0.97624 1.21604 0.98882 0.91597 1.01176 1.24319 0.97548 0.98823 0.94900 0.89189 1.22534 0.98999 0.92914 1.02032 1.21924 0.96921 0.98820 0.98709 1.23895 1.01040 0.96098 1.02484 1.88295 1.77368 1.05132 1.34442 0.93089 0.95635 0.96698 0.92018 0.92177 0.90601 0.90573 0.91599 0.91052 0.89945 0.89134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.65 13.29 55.43 0.74 -26.91 15 2 C 0.06 1.67 5.46 -17.82 -0.10 1.58 15 3 Si 0.89 22.09 29.54 -169.99 -5.02 17.07 15 4 H -0.27 -6.59 7.11 56.52 0.40 -6.19 15 5 H -0.28 -6.99 7.11 56.52 0.40 -6.58 15 6 H -0.28 -6.95 7.11 56.52 0.40 -6.55 15 7 C -0.52 -15.12 9.11 -34.44 -0.31 -15.43 15 8 H 0.06 1.55 7.74 -52.48 -0.41 1.15 15 9 C 0.02 0.54 4.84 -27.89 -0.13 0.41 15 10 C -0.09 -1.98 4.76 -26.74 -0.13 -2.10 15 11 C -0.03 -0.49 3.34 -25.59 -0.09 -0.57 15 12 H 0.09 1.58 8.14 -51.93 -0.42 1.16 15 13 C -0.13 -1.70 5.81 -25.62 -0.15 -1.85 15 14 C -0.13 -1.45 6.33 -26.40 -0.17 -1.61 15 15 C -0.09 -1.14 7.38 37.52 0.28 -0.86 15 16 S -0.28 -5.16 21.76 -107.50 -2.34 -7.50 15 17 H 0.26 7.54 8.31 -40.82 -0.34 7.20 15 18 H 0.03 0.74 7.33 -51.92 -0.38 0.36 15 19 H 0.01 0.42 8.14 -51.93 -0.42 -0.01 15 20 H 0.06 1.22 8.14 -51.93 -0.42 0.80 15 21 H 0.06 1.27 8.14 -51.93 -0.42 0.85 15 22 H 0.08 0.90 8.14 -51.93 -0.42 0.48 15 23 H 0.08 1.04 8.05 -51.93 -0.42 0.62 15 24 H 0.07 0.68 8.14 -51.93 -0.42 0.25 15 25 H 0.07 0.70 8.14 -51.93 -0.42 0.28 15 26 H 0.08 0.99 8.14 -51.93 -0.42 0.57 15 27 H 0.09 1.06 8.14 -51.93 -0.42 0.63 15 LS Contribution 237.63 15.07 3.58 3.58 Total: -1.00 -31.19 237.63 -7.98 -39.18 By element: Atomic # 1 Polarization: -0.83 SS G_CDS: -4.14 Total: -4.98 kcal Atomic # 6 Polarization: -19.65 SS G_CDS: -0.80 Total: -20.44 kcal Atomic # 7 Polarization: -27.65 SS G_CDS: 0.74 Total: -26.91 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Atomic # 16 Polarization: -5.16 SS G_CDS: -2.34 Total: -7.50 kcal Total LS contribution 3.58 Total: 3.58 kcal Total: -31.19 -7.98 -39.18 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084233230.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.340 kcal (2) G-P(sol) polarization free energy of solvation -31.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds