Wall clock time and date at job start Mon Mar 30 2020 01:56:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86801 * 120.00400 * 2 1 4 4 H 1.48496 * 109.47460 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47053 * 300.00341 * 3 2 1 6 6 H 1.48499 * 109.46869 * 60.00187 * 3 2 1 7 7 C 1.37879 * 119.99870 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99914 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00185 * 359.97438 * 7 2 1 10 10 C 1.52994 * 109.47504 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47323 * 180.02562 * 10 9 7 12 12 H 1.08994 * 111.02599 * 302.21792 * 11 10 9 13 13 C 1.55159 * 111.13364 * 177.98125 * 11 10 9 14 14 C 1.52934 * 108.96139 * 200.64976 * 13 11 10 15 15 C 1.53707 * 112.49291 * 30.10136 * 14 13 11 16 16 S 1.83400 * 104.96782 * 357.17229 * 15 14 13 17 17 H 0.96997 * 119.99685 * 359.97438 * 1 2 3 18 18 H 1.09007 * 109.46960 * 60.00411 * 9 7 2 19 19 H 1.09002 * 109.47490 * 300.00737 * 9 7 2 20 20 H 1.09007 * 109.47137 * 60.00540 * 10 9 7 21 21 H 1.09002 * 109.47315 * 300.00803 * 10 9 7 22 22 H 1.08999 * 109.60347 * 80.71788 * 13 11 10 23 23 H 1.09004 * 109.59880 * 320.58365 * 13 11 10 24 24 H 1.08996 * 108.88892 * 269.30259 * 14 13 11 25 25 H 1.08999 * 108.77383 * 150.81467 * 14 13 11 26 26 H 1.08999 * 110.34351 * 238.30429 * 15 14 13 27 27 H 1.08996 * 110.43289 * 116.09271 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2124 6 1 1.8905 2.3963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2451 -3.6621 -0.0005 11 6 1.4801 -4.9871 -0.0012 12 1 0.8146 -5.0548 0.8593 13 6 2.4530 -6.1947 -0.0522 14 6 1.6956 -7.4218 -0.5617 15 6 0.5562 -7.0516 -1.5247 16 16 0.5553 -5.2183 -1.5749 17 1 -0.4849 0.8400 0.0004 18 1 0.6240 -2.5567 -0.8904 19 1 0.6245 -2.5571 0.8896 20 1 2.8718 -3.6045 0.8896 21 1 2.8719 -3.6044 -0.8904 22 1 2.8417 -6.3936 0.9465 23 1 3.2801 -5.9697 -0.7255 24 1 1.2773 -7.9573 0.2906 25 1 2.3964 -8.0766 -1.0795 26 1 -0.3963 -7.4206 -1.1444 27 1 0.7500 -7.4577 -2.5174 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084233230.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:07 Heat of formation + Delta-G solvation = -48.319157 kcal Electronic energy + Delta-G solvation = -9406.158483 eV Core-core repulsion = 7674.141067 eV Total energy + Delta-G solvation = -1732.017417 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 186.077 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -37.60201 -35.59099 -33.58964 -29.90570 -27.10643 -24.85536 -22.24018 -21.32344 -18.47763 -17.67064 -16.56943 -16.27719 -15.54726 -15.12739 -14.39541 -14.18440 -13.74479 -13.20018 -12.93577 -12.73157 -12.57398 -12.32803 -12.21471 -11.71642 -11.47263 -11.36787 -11.04300 -10.68519 -10.48646 -8.66810 -8.20064 -6.32164 1.00068 1.38677 1.39873 1.53174 1.59439 2.40375 3.12900 3.62862 3.86150 4.07932 4.17549 4.30371 4.45523 4.61541 4.76507 4.82563 4.96844 5.03491 5.10083 5.20152 5.27661 5.49652 5.72016 5.84960 6.22641 6.85686 7.37135 8.92166 Molecular weight = 186.08amu Principal moments of inertia in cm(-1) A = 0.087190 B = 0.008757 C = 0.008279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 321.060512 B = 3196.763726 C = 3381.385798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.003 4.003 3 Si 0.968 3.032 4 H -0.259 1.259 5 H -0.280 1.280 6 H -0.276 1.276 7 C -0.544 4.544 8 H 0.062 0.938 9 C 0.026 3.974 10 C -0.082 4.082 11 C -0.018 4.018 12 H 0.085 0.915 13 C -0.117 4.117 14 C -0.122 4.122 15 C -0.062 4.062 16 S -0.379 6.379 17 H 0.263 0.737 18 H -0.007 1.007 19 H -0.013 1.013 20 H 0.075 0.925 21 H 0.055 0.945 22 H 0.100 0.900 23 H 0.075 0.925 24 H 0.086 0.914 25 H 0.098 0.902 26 H 0.095 0.905 27 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.765 -14.178 0.042 14.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.200 4.200 3 Si 0.792 3.208 4 H -0.183 1.183 5 H -0.205 1.205 6 H -0.202 1.202 7 C -0.582 4.582 8 H 0.080 0.920 9 C -0.011 4.011 10 C -0.120 4.120 11 C -0.146 4.146 12 H 0.104 0.896 13 C -0.157 4.157 14 C -0.160 4.160 15 C -0.210 4.210 16 S -0.154 6.154 17 H 0.072 0.928 18 H 0.011 0.989 19 H 0.005 0.995 20 H 0.093 0.907 21 H 0.074 0.926 22 H 0.118 0.882 23 H 0.093 0.907 24 H 0.105 0.895 25 H 0.117 0.883 26 H 0.113 0.887 27 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 4.158 -13.309 -0.768 13.965 hybrid contribution 0.228 0.447 0.682 0.847 sum 4.387 -12.862 -0.086 13.590 Atomic orbital electron populations 1.70134 1.07985 1.27670 1.51736 1.26037 0.95756 1.03570 0.94681 0.85357 0.79140 0.78527 0.77768 1.18294 1.20547 1.20164 1.21742 0.93588 0.92358 1.50469 0.91961 1.19000 0.94305 0.93125 0.94661 1.21363 0.97707 0.91446 1.01512 1.24207 0.97838 0.98970 0.93566 0.89620 1.22514 0.97945 0.91565 1.03637 1.21941 0.96680 0.98109 0.99288 1.24033 1.02674 0.89992 1.04259 1.88615 1.78371 1.12313 1.36066 0.92830 0.98903 0.99505 0.90660 0.92588 0.88171 0.90660 0.89513 0.88311 0.88668 0.87385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -59.42 13.29 21.45 0.28 -59.13 15 2 C 0.00 -0.18 5.46 84.66 0.46 0.28 15 3 Si 0.97 45.58 29.54 68.60 2.03 47.61 15 4 H -0.26 -11.52 7.11 99.48 0.71 -10.82 15 5 H -0.28 -12.90 7.11 99.48 0.71 -12.20 15 6 H -0.28 -12.56 7.11 99.48 0.71 -11.85 15 7 C -0.54 -32.17 9.11 25.60 0.23 -31.93 15 8 H 0.06 3.50 7.74 -2.91 -0.02 3.48 15 9 C 0.03 1.46 4.84 29.85 0.14 1.61 15 10 C -0.08 -3.47 4.76 30.59 0.15 -3.32 15 11 C -0.02 -0.62 3.34 31.33 0.10 -0.51 15 12 H 0.09 3.01 8.14 -2.39 -0.02 2.99 15 13 C -0.12 -2.83 5.81 31.31 0.18 -2.65 15 14 C -0.12 -2.31 6.33 30.81 0.19 -2.12 15 15 C -0.06 -1.45 7.38 72.22 0.53 -0.92 15 16 S -0.38 -14.22 21.76 -56.49 -1.23 -15.45 15 17 H 0.26 15.60 8.31 -92.71 -0.77 14.83 15 18 H -0.01 -0.46 7.33 -2.38 -0.02 -0.47 15 19 H -0.01 -0.81 8.14 -2.39 -0.02 -0.83 15 20 H 0.07 2.94 8.14 -2.38 -0.02 2.92 15 21 H 0.06 2.39 8.14 -2.39 -0.02 2.37 15 22 H 0.10 1.97 8.14 -2.39 -0.02 1.95 15 23 H 0.07 1.84 8.05 -2.38 -0.02 1.82 15 24 H 0.09 1.35 8.14 -2.39 -0.02 1.33 15 25 H 0.10 1.43 8.14 -2.39 -0.02 1.41 15 26 H 0.09 2.02 8.14 -2.39 -0.02 2.00 15 27 H 0.11 2.19 8.14 -2.39 -0.02 2.17 15 Total: -1.00 -69.62 237.63 4.20 -65.43 By element: Atomic # 1 Polarization: 0.00 SS G_CDS: 1.12 Total: 1.11 kcal Atomic # 6 Polarization: -41.57 SS G_CDS: 2.00 Total: -39.57 kcal Atomic # 7 Polarization: -59.42 SS G_CDS: 0.28 Total: -59.13 kcal Atomic # 14 Polarization: 45.58 SS G_CDS: 2.03 Total: 47.61 kcal Atomic # 16 Polarization: -14.22 SS G_CDS: -1.23 Total: -15.45 kcal Total: -69.62 4.20 -65.43 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084233230.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.107 kcal (2) G-P(sol) polarization free energy of solvation -69.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds