Wall clock time and date at job start Mon Mar 30 2020 01:56:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86799 * 120.00129 * 2 1 4 4 H 1.48504 * 109.47467 * 240.00033 * 3 2 1 5 5 H 1.48504 * 109.47194 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47408 * 119.99608 * 3 2 1 7 7 C 1.37874 * 120.00021 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99805 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00206 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47101 * 179.97438 * 9 7 2 11 11 C 1.52575 * 109.23009 * 296.23564 * 10 9 7 12 12 C 1.53096 * 109.96185 * 169.00258 * 11 10 9 13 13 S 1.81754 * 108.83703 * 63.02452 * 12 11 10 14 14 C 1.81743 * 102.22021 * 306.73811 * 13 12 11 15 15 C 1.52586 * 109.22438 * 174.99981 * 10 9 7 16 16 H 0.97001 * 120.00201 * 0.02562 * 1 2 3 17 17 H 1.09000 * 109.46984 * 60.00098 * 9 7 2 18 18 H 1.08993 * 109.46864 * 299.99527 * 9 7 2 19 19 H 1.09001 * 109.19017 * 55.62092 * 10 9 7 20 20 H 1.09002 * 109.38965 * 289.15695 * 11 10 9 21 21 H 1.09004 * 109.38998 * 48.85547 * 11 10 9 22 22 H 1.09004 * 109.57375 * 303.22188 * 12 11 10 23 23 H 1.08999 * 109.58185 * 182.83147 * 12 11 10 24 24 H 1.09003 * 109.57653 * 293.45237 * 14 13 12 25 25 H 1.09008 * 109.57539 * 173.07585 * 14 13 12 26 26 H 1.09000 * 109.38705 * 311.14580 * 15 10 9 27 27 H 1.08995 * 109.38874 * 70.84551 * 15 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0044 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0005 11 6 3.0559 -3.6301 -1.2917 12 6 4.2312 -4.6065 -1.1957 13 16 3.5793 -6.2937 -1.0169 14 6 2.4564 -6.1239 0.4020 15 6 1.4809 -4.9766 0.1261 16 1 -0.4850 0.8400 -0.0004 17 1 0.6247 -2.5571 -0.8897 18 1 0.6241 -2.5567 0.8903 19 1 2.9199 -3.5566 0.8502 20 1 2.4163 -3.9146 -2.1272 21 1 3.4358 -2.6217 -1.4558 22 1 4.8429 -4.3575 -0.3285 23 1 4.8345 -4.5422 -2.1012 24 1 3.0335 -5.9046 1.3004 25 1 1.9000 -7.0510 0.5405 26 1 0.7671 -4.9032 0.9466 27 1 0.9442 -5.1732 -0.8020 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084233278.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:11 Heat of formation + Delta-G solvation = -33.228503 kcal Electronic energy + Delta-G solvation = -9702.060110 eV Core-core repulsion = 7970.697073 eV Total energy + Delta-G solvation = -1731.363037 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 186.077 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -36.99894 -32.77811 -31.06292 -29.31950 -25.28250 -22.57125 -21.94196 -19.33284 -16.62565 -16.10833 -14.66831 -14.16493 -13.74713 -13.39212 -13.21119 -12.73427 -12.33750 -11.91883 -11.36864 -11.15711 -10.85878 -10.65012 -10.52845 -10.01217 -9.73234 -9.54738 -9.14247 -8.95059 -8.37578 -7.39587 -6.02346 -4.04630 2.13310 2.85481 3.30871 3.35904 3.37724 4.43187 5.17872 5.30273 5.31451 5.35727 5.49044 5.68145 5.80283 5.94754 6.08482 6.31776 6.50444 6.51203 6.89467 6.97456 7.08155 7.63081 7.77417 7.96741 8.39055 9.01251 9.59222 11.08885 Molecular weight = 186.08amu Principal moments of inertia in cm(-1) A = 0.073202 B = 0.010035 C = 0.009182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 382.409468 B = 2789.494225 C = 3048.860785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.057 3.943 3 Si 0.890 3.110 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.519 4.519 8 H 0.055 0.945 9 C 0.029 3.971 10 C -0.089 4.089 11 C -0.109 4.109 12 C -0.072 4.072 13 S -0.300 6.300 14 C -0.072 4.072 15 C -0.117 4.117 16 H 0.261 0.739 17 H 0.017 0.983 18 H 0.016 0.984 19 H 0.056 0.944 20 H 0.064 0.936 21 H 0.088 0.912 22 H 0.078 0.922 23 H 0.094 0.906 24 H 0.078 0.922 25 H 0.094 0.906 26 H 0.069 0.931 27 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.205 -8.420 -0.521 9.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.144 4.144 3 Si 0.718 3.282 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.558 4.558 8 H 0.074 0.926 9 C -0.008 4.008 10 C -0.108 4.108 11 C -0.148 4.148 12 C -0.220 4.220 13 S -0.075 6.075 14 C -0.220 4.220 15 C -0.156 4.156 16 H 0.071 0.929 17 H 0.036 0.964 18 H 0.035 0.965 19 H 0.074 0.926 20 H 0.083 0.917 21 H 0.106 0.894 22 H 0.096 0.904 23 H 0.113 0.887 24 H 0.097 0.903 25 H 0.113 0.887 26 H 0.088 0.912 27 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 5.289 -9.218 -1.123 10.687 hybrid contribution 0.190 2.003 0.746 2.146 sum 5.479 -7.215 -0.377 9.068 Atomic orbital electron populations 1.69948 1.06059 1.26715 1.50704 1.25013 0.94813 0.99189 0.95360 0.86693 0.79622 0.83306 0.78601 1.20238 1.21294 1.20286 1.21204 0.92906 0.90985 1.50672 0.92644 1.19112 0.93515 0.90827 0.97299 1.21176 0.98186 0.95050 0.96392 1.21739 0.94983 0.99138 0.98932 1.23534 1.00920 0.92834 1.04731 1.86477 1.57326 1.18446 1.45277 1.23436 0.98843 1.02673 0.97024 1.21841 0.97449 0.93914 1.02419 0.92937 0.96439 0.96535 0.92592 0.91693 0.89409 0.90356 0.88711 0.90329 0.88749 0.91213 0.91290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.63 13.29 55.43 0.74 -25.89 15 2 C 0.06 1.62 5.46 -17.82 -0.10 1.53 15 3 Si 0.89 21.37 29.54 -169.99 -5.02 16.35 15 4 H -0.28 -6.52 7.11 56.52 0.40 -6.11 15 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 15 6 H -0.28 -6.55 7.11 56.52 0.40 -6.15 15 7 C -0.52 -14.24 8.22 -34.44 -0.28 -14.52 15 8 H 0.06 1.47 7.03 -52.48 -0.37 1.10 15 9 C 0.03 0.74 4.42 -27.88 -0.12 0.62 15 10 C -0.09 -1.78 1.89 -91.05 -0.17 -1.95 15 11 C -0.11 -2.01 4.98 -26.90 -0.13 -2.14 15 12 C -0.07 -1.12 6.46 37.21 0.24 -0.88 15 13 S -0.30 -4.70 22.33 -107.50 -2.40 -7.10 15 14 C -0.07 -1.05 6.45 37.21 0.24 -0.81 15 15 C -0.12 -2.00 5.05 -26.89 -0.14 -2.13 15 16 H 0.26 7.36 8.31 -40.82 -0.34 7.02 15 17 H 0.02 0.47 8.14 -51.93 -0.42 0.04 15 18 H 0.02 0.44 8.09 -51.93 -0.42 0.02 15 19 H 0.06 1.13 8.08 -51.93 -0.42 0.71 15 20 H 0.06 1.21 8.06 -51.93 -0.42 0.79 15 21 H 0.09 1.75 6.57 -51.93 -0.34 1.41 15 22 H 0.08 1.18 8.14 -51.93 -0.42 0.76 15 23 H 0.09 1.32 8.14 -51.93 -0.42 0.90 15 24 H 0.08 1.11 8.14 -51.93 -0.42 0.69 15 25 H 0.09 1.21 8.14 -51.92 -0.42 0.79 15 26 H 0.07 1.16 8.05 -51.93 -0.42 0.75 15 27 H 0.07 1.19 8.06 -51.93 -0.42 0.77 15 LS Contribution 232.35 15.07 3.50 3.50 Total: -1.00 -28.71 232.35 -7.70 -36.41 By element: Atomic # 1 Polarization: 1.08 SS G_CDS: -4.05 Total: -2.97 kcal Atomic # 6 Polarization: -19.84 SS G_CDS: -0.47 Total: -20.30 kcal Atomic # 7 Polarization: -26.63 SS G_CDS: 0.74 Total: -25.89 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Atomic # 16 Polarization: -4.70 SS G_CDS: -2.40 Total: -7.10 kcal Total LS contribution 3.50 Total: 3.50 kcal Total: -28.71 -7.70 -36.41 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084233278.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.185 kcal (2) G-P(sol) polarization free energy of solvation -28.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds