Wall clock time and date at job start Mon Mar 30 2020 01:56:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86799 * 120.00129 * 2 1 4 4 H 1.48504 * 109.47467 * 240.00033 * 3 2 1 5 5 H 1.48504 * 109.47194 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47408 * 119.99608 * 3 2 1 7 7 C 1.37874 * 120.00021 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99805 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00206 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47101 * 179.97438 * 9 7 2 11 11 C 1.52575 * 109.23009 * 296.23564 * 10 9 7 12 12 C 1.53096 * 109.96185 * 169.00258 * 11 10 9 13 13 S 1.81754 * 108.83703 * 63.02452 * 12 11 10 14 14 C 1.81743 * 102.22021 * 306.73811 * 13 12 11 15 15 C 1.52586 * 109.22438 * 174.99981 * 10 9 7 16 16 H 0.97001 * 120.00201 * 0.02562 * 1 2 3 17 17 H 1.09000 * 109.46984 * 60.00098 * 9 7 2 18 18 H 1.08993 * 109.46864 * 299.99527 * 9 7 2 19 19 H 1.09001 * 109.19017 * 55.62092 * 10 9 7 20 20 H 1.09002 * 109.38965 * 289.15695 * 11 10 9 21 21 H 1.09004 * 109.38998 * 48.85547 * 11 10 9 22 22 H 1.09004 * 109.57375 * 303.22188 * 12 11 10 23 23 H 1.08999 * 109.58185 * 182.83147 * 12 11 10 24 24 H 1.09003 * 109.57653 * 293.45237 * 14 13 12 25 25 H 1.09008 * 109.57539 * 173.07585 * 14 13 12 26 26 H 1.09000 * 109.38705 * 311.14580 * 15 10 9 27 27 H 1.08995 * 109.38874 * 70.84551 * 15 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0044 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0005 11 6 3.0559 -3.6301 -1.2917 12 6 4.2312 -4.6065 -1.1957 13 16 3.5793 -6.2937 -1.0169 14 6 2.4564 -6.1239 0.4020 15 6 1.4809 -4.9766 0.1261 16 1 -0.4850 0.8400 -0.0004 17 1 0.6247 -2.5571 -0.8897 18 1 0.6241 -2.5567 0.8903 19 1 2.9199 -3.5566 0.8502 20 1 2.4163 -3.9146 -2.1272 21 1 3.4358 -2.6217 -1.4558 22 1 4.8429 -4.3575 -0.3285 23 1 4.8345 -4.5422 -2.1012 24 1 3.0335 -5.9046 1.3004 25 1 1.9000 -7.0510 0.5405 26 1 0.7671 -4.9032 0.9466 27 1 0.9442 -5.1732 -0.8020 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084233278.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:11 Heat of formation + Delta-G solvation = -48.966722 kcal Electronic energy + Delta-G solvation = -9702.742570 eV Core-core repulsion = 7970.697073 eV Total energy + Delta-G solvation = -1732.045497 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 186.077 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -38.58371 -34.84868 -32.39451 -31.13055 -27.11017 -24.03422 -23.67664 -20.94381 -18.51734 -17.65867 -16.61308 -15.51273 -15.24340 -14.97132 -14.53948 -14.46899 -13.71314 -13.60570 -13.21915 -12.88712 -12.54598 -12.41058 -12.21010 -11.70187 -11.39032 -11.27741 -10.91183 -10.54026 -10.50135 -8.63153 -8.18571 -6.28421 0.91836 1.40303 1.42419 1.50141 1.62708 2.41159 3.14871 3.81594 3.97622 4.01014 4.16410 4.36058 4.47276 4.62911 4.75852 4.81927 5.02289 5.08354 5.25875 5.29897 5.41398 5.52617 5.76054 5.85939 6.26175 6.87363 7.40246 8.93094 Molecular weight = 186.08amu Principal moments of inertia in cm(-1) A = 0.073202 B = 0.010035 C = 0.009182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 382.409468 B = 2789.494225 C = 3048.860785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.001 4.001 3 Si 0.960 3.040 4 H -0.266 1.266 5 H -0.286 1.286 6 H -0.268 1.268 7 C -0.533 4.533 8 H 0.063 0.937 9 C 0.034 3.966 10 C -0.082 4.082 11 C -0.104 4.104 12 C -0.066 4.066 13 S -0.302 6.302 14 C -0.065 4.065 15 C -0.113 4.113 16 H 0.262 0.738 17 H -0.011 1.011 18 H -0.011 1.011 19 H 0.055 0.945 20 H 0.058 0.942 21 H 0.069 0.931 22 H 0.086 0.914 23 H 0.114 0.886 24 H 0.088 0.912 25 H 0.119 0.881 26 H 0.070 0.930 27 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.730 -8.911 -0.432 11.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.198 4.198 3 Si 0.785 3.215 4 H -0.191 1.191 5 H -0.212 1.212 6 H -0.193 1.193 7 C -0.571 4.571 8 H 0.081 0.919 9 C -0.003 4.003 10 C -0.101 4.101 11 C -0.143 4.143 12 C -0.214 4.214 13 S -0.077 6.077 14 C -0.213 4.213 15 C -0.152 4.152 16 H 0.071 0.929 17 H 0.008 0.992 18 H 0.008 0.992 19 H 0.073 0.927 20 H 0.076 0.924 21 H 0.088 0.912 22 H 0.105 0.895 23 H 0.132 0.868 24 H 0.107 0.893 25 H 0.137 0.863 26 H 0.088 0.912 27 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 6.831 -9.725 -1.036 11.929 hybrid contribution -0.331 2.130 0.719 2.272 sum 6.500 -7.595 -0.317 10.002 Atomic orbital electron populations 1.70090 1.07820 1.27684 1.51968 1.25943 0.95667 1.03219 0.95002 0.85575 0.78308 0.78461 0.79172 1.19125 1.21156 1.19254 1.21635 0.93500 0.92038 1.49926 0.91862 1.19001 0.93936 0.92772 0.94573 1.21034 0.97216 0.94519 0.97292 1.21608 0.95844 0.99170 0.97662 1.23457 0.99705 0.92004 1.06204 1.86540 1.57441 1.17923 1.45795 1.23430 0.98300 1.02532 0.96991 1.21735 0.97753 0.93361 1.02305 0.92913 0.99218 0.99237 0.92675 0.92353 0.91234 0.89502 0.86786 0.89305 0.86305 0.91173 0.91787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.74 13.29 21.44 0.28 -56.46 15 2 C 0.00 -0.05 5.46 84.66 0.46 0.42 15 3 Si 0.96 43.77 29.54 68.60 2.03 45.79 15 4 H -0.27 -11.62 7.11 99.48 0.71 -10.91 15 5 H -0.29 -12.88 7.11 99.48 0.71 -12.18 15 6 H -0.27 -11.71 7.11 99.48 0.71 -11.00 15 7 C -0.53 -29.49 8.22 25.60 0.21 -29.28 15 8 H 0.06 3.32 7.03 -2.91 -0.02 3.30 15 9 C 0.03 1.77 4.42 29.85 0.13 1.90 15 10 C -0.08 -3.24 1.89 -11.07 -0.02 -3.26 15 11 C -0.10 -3.74 4.98 30.49 0.15 -3.59 15 12 C -0.07 -1.89 6.46 72.01 0.46 -1.43 15 13 S -0.30 -8.64 22.33 -56.49 -1.26 -9.91 15 14 C -0.06 -1.73 6.45 72.01 0.46 -1.26 15 15 C -0.11 -3.71 5.05 30.49 0.15 -3.56 15 16 H 0.26 15.03 8.31 -92.71 -0.77 14.26 15 17 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 15 18 H -0.01 -0.60 8.09 -2.39 -0.02 -0.62 15 19 H 0.05 2.18 8.08 -2.39 -0.02 2.16 15 20 H 0.06 2.15 8.06 -2.39 -0.02 2.13 15 21 H 0.07 2.74 6.57 -2.38 -0.02 2.73 15 22 H 0.09 2.38 8.14 -2.39 -0.02 2.36 15 23 H 0.11 2.86 8.14 -2.39 -0.02 2.84 15 24 H 0.09 2.24 8.14 -2.39 -0.02 2.22 15 25 H 0.12 2.65 8.14 -2.38 -0.02 2.63 15 26 H 0.07 2.30 8.05 -2.39 -0.02 2.28 15 27 H 0.06 2.17 8.06 -2.39 -0.02 2.15 15 Total: -1.00 -61.10 232.35 4.19 -56.91 By element: Atomic # 1 Polarization: 2.61 SS G_CDS: 1.12 Total: 3.73 kcal Atomic # 6 Polarization: -42.08 SS G_CDS: 2.02 Total: -40.07 kcal Atomic # 7 Polarization: -56.74 SS G_CDS: 0.28 Total: -56.46 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.79 kcal Atomic # 16 Polarization: -8.64 SS G_CDS: -1.26 Total: -9.91 kcal Total: -61.10 4.19 -56.91 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084233278.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.942 kcal (2) G-P(sol) polarization free energy of solvation -61.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds