Wall clock time and date at job start Mon Mar 30 2020 01:56:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86802 * 120.00011 * 2 1 4 4 H 1.48498 * 109.46957 * 270.00016 * 3 2 1 5 5 H 1.48494 * 109.46965 * 30.00064 * 3 2 1 6 6 H 1.48500 * 109.46633 * 150.00125 * 3 2 1 7 7 C 1.37876 * 120.00066 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99827 * 359.97438 * 7 2 1 9 9 C 1.50696 * 120.00288 * 179.97438 * 7 2 1 10 10 C 1.53000 * 109.47265 * 179.97438 * 9 7 2 11 11 H 1.08993 * 109.39498 * 305.20389 * 10 9 7 12 12 C 1.52580 * 109.39224 * 185.49527 * 10 9 7 13 13 C 1.52583 * 110.72899 * 169.18220 * 12 10 9 14 14 C 1.53091 * 109.95785 * 70.67582 * 13 12 10 15 15 S 1.81755 * 108.83954 * 296.97696 * 14 13 12 16 16 C 1.53098 * 109.38575 * 65.00472 * 10 9 7 17 17 H 0.97001 * 119.99906 * 0.02562 * 1 2 3 18 18 H 1.09005 * 109.46874 * 59.99957 * 9 7 2 19 19 H 1.08997 * 109.47128 * 300.00052 * 9 7 2 20 20 H 1.09004 * 109.22795 * 289.50255 * 12 10 9 21 21 H 1.09003 * 109.22662 * 48.85957 * 12 10 9 22 22 H 1.08996 * 109.38894 * 190.82856 * 13 12 10 23 23 H 1.09001 * 109.38507 * 310.52919 * 13 12 10 24 24 H 1.09002 * 109.57697 * 177.17331 * 14 13 12 25 25 H 1.09000 * 109.57780 * 56.77877 * 14 13 12 26 26 H 1.08999 * 109.58053 * 63.36677 * 16 10 9 27 27 H 1.09005 * 109.68225 * 303.04092 * 16 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 6 4.0215 -2.6366 -0.0010 11 1 3.5837 -3.1752 0.8393 12 6 5.5411 -2.6367 0.1362 13 6 6.0588 -4.0462 0.4072 14 6 5.9108 -4.9078 -0.8496 15 16 4.1452 -5.0570 -1.2543 16 6 3.6150 -3.3194 -1.3096 17 1 -0.4850 0.8401 -0.0004 18 1 3.8752 -0.6804 0.8889 19 1 3.8745 -0.6801 -0.8911 20 1 5.9849 -2.2625 -0.7864 21 1 5.8270 -1.9845 0.9615 22 1 7.1101 -3.9973 0.6907 23 1 5.4864 -4.4917 1.2208 24 1 6.3280 -5.8977 -0.6649 25 1 6.4371 -4.4365 -1.6796 26 1 4.0967 -2.8172 -2.1486 27 1 2.5325 -3.2715 -1.4279 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084233286.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:05 Heat of formation + Delta-G solvation = -29.838054 kcal Electronic energy + Delta-G solvation = -9704.434709 eV Core-core repulsion = 7973.218693 eV Total energy + Delta-G solvation = -1731.216016 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 186.077 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -37.07579 -33.24747 -31.59896 -27.64611 -26.86199 -23.28671 -21.06645 -19.42225 -16.78114 -16.20994 -14.82946 -14.45337 -14.06220 -13.27772 -12.99338 -12.73025 -12.60718 -11.97269 -11.61484 -11.04455 -10.99017 -10.88345 -10.68854 -10.04540 -9.88999 -9.55411 -9.20449 -9.01992 -8.56436 -7.30485 -6.06500 -4.04889 2.20145 2.98733 3.28240 3.36270 3.38905 4.42544 4.94777 5.04773 5.25370 5.29824 5.47467 5.60519 5.73455 5.84575 5.97383 6.15946 6.31339 6.31759 6.63837 6.71210 6.76881 7.18750 7.34908 7.75457 8.50556 8.98043 9.55676 11.06651 Molecular weight = 186.08amu Principal moments of inertia in cm(-1) A = 0.064413 B = 0.011170 C = 0.009987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 434.588271 B = 2506.187903 C = 2803.037845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.067 3.933 3 Si 0.878 3.122 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.266 1.266 7 C -0.521 4.521 8 H 0.074 0.926 9 C -0.006 4.006 10 C -0.074 4.074 11 H 0.076 0.924 12 C -0.127 4.127 13 C -0.120 4.120 14 C -0.077 4.077 15 S -0.303 6.303 16 C -0.051 4.051 17 H 0.263 0.737 18 H 0.020 0.980 19 H 0.012 0.988 20 H 0.056 0.944 21 H 0.067 0.933 22 H 0.064 0.936 23 H 0.073 0.927 24 H 0.095 0.905 25 H 0.076 0.924 26 H 0.073 0.927 27 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.637 -5.613 -0.866 12.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.134 4.134 3 Si 0.706 3.294 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.191 1.191 7 C -0.559 4.559 8 H 0.092 0.908 9 C -0.045 4.045 10 C -0.094 4.094 11 H 0.094 0.906 12 C -0.165 4.165 13 C -0.159 4.159 14 C -0.225 4.225 15 S -0.076 6.076 16 C -0.199 4.199 17 H 0.073 0.927 18 H 0.038 0.962 19 H 0.030 0.970 20 H 0.075 0.925 21 H 0.085 0.915 22 H 0.083 0.917 23 H 0.092 0.908 24 H 0.113 0.887 25 H 0.095 0.905 26 H 0.092 0.908 27 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 10.878 -6.456 -1.064 12.694 hybrid contribution 1.025 2.029 0.114 2.276 sum 11.903 -4.426 -0.949 12.734 Atomic orbital electron populations 1.69915 1.06283 1.26887 1.50957 1.25028 0.94704 0.99112 0.94564 0.86803 0.80358 0.83789 0.78478 1.20333 1.21389 1.19082 1.21142 0.89325 0.94484 1.50916 0.90753 1.19645 0.97365 0.91026 0.96455 1.21225 0.92890 0.99188 0.96120 0.90579 1.21678 0.97203 0.95766 1.01856 1.21722 1.01140 0.96072 0.96965 1.23346 0.95054 1.03393 1.00724 1.86711 1.10885 1.16701 1.93274 1.23593 1.05777 0.89746 1.00757 0.92720 0.96196 0.96997 0.92504 0.91455 0.91723 0.90784 0.88702 0.90494 0.90842 0.86427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.58 13.96 55.43 0.77 -26.81 15 2 C 0.07 1.93 5.47 -17.82 -0.10 1.84 15 3 Si 0.88 21.47 27.47 -169.99 -4.67 16.80 15 4 H -0.28 -6.67 7.11 56.52 0.40 -6.27 15 5 H -0.29 -7.01 7.11 56.52 0.40 -6.61 15 6 H -0.27 -6.24 6.54 56.52 0.37 -5.87 15 7 C -0.52 -14.44 8.92 -34.44 -0.31 -14.75 15 8 H 0.07 2.22 7.32 -52.48 -0.38 1.84 15 9 C -0.01 -0.14 3.49 -27.89 -0.10 -0.23 15 10 C -0.07 -1.43 1.98 -90.78 -0.18 -1.61 15 11 H 0.08 1.56 8.05 -51.93 -0.42 1.14 15 12 C -0.13 -2.00 4.92 -27.16 -0.13 -2.13 15 13 C -0.12 -1.60 5.75 -26.90 -0.15 -1.75 15 14 C -0.08 -1.02 6.46 37.20 0.24 -0.78 15 15 S -0.30 -5.10 22.33 -107.50 -2.40 -7.50 15 16 C -0.05 -0.96 5.58 37.21 0.21 -0.76 15 17 H 0.26 7.55 8.31 -40.82 -0.34 7.21 15 18 H 0.02 0.46 7.14 -51.93 -0.37 0.09 15 19 H 0.01 0.27 7.57 -51.93 -0.39 -0.12 15 20 H 0.06 0.86 8.08 -51.93 -0.42 0.44 15 21 H 0.07 1.03 8.04 -51.93 -0.42 0.61 15 22 H 0.06 0.72 8.14 -51.93 -0.42 0.29 15 23 H 0.07 1.03 8.05 -51.93 -0.42 0.61 15 24 H 0.09 1.09 8.14 -51.93 -0.42 0.66 15 25 H 0.08 0.96 8.14 -51.93 -0.42 0.54 15 26 H 0.07 1.32 8.14 -51.93 -0.42 0.90 15 27 H 0.12 2.49 6.88 -51.92 -0.36 2.14 15 LS Contribution 229.09 15.07 3.45 3.45 Total: -1.00 -29.23 229.09 -7.40 -36.63 By element: Atomic # 1 Polarization: 1.63 SS G_CDS: -4.04 Total: -2.40 kcal Atomic # 6 Polarization: -19.66 SS G_CDS: -0.52 Total: -20.18 kcal Atomic # 7 Polarization: -27.58 SS G_CDS: 0.77 Total: -26.81 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -4.67 Total: 16.80 kcal Atomic # 16 Polarization: -5.10 SS G_CDS: -2.40 Total: -7.50 kcal Total LS contribution 3.45 Total: 3.45 kcal Total: -29.23 -7.40 -36.63 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084233286.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.796 kcal (2) G-P(sol) polarization free energy of solvation -29.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds