Wall clock time and date at job start Mon Mar 30 2020 01:56:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86802 * 120.00011 * 2 1 4 4 H 1.48498 * 109.46957 * 270.00016 * 3 2 1 5 5 H 1.48494 * 109.46965 * 30.00064 * 3 2 1 6 6 H 1.48500 * 109.46633 * 150.00125 * 3 2 1 7 7 C 1.37876 * 120.00066 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99827 * 359.97438 * 7 2 1 9 9 C 1.50696 * 120.00288 * 179.97438 * 7 2 1 10 10 C 1.53000 * 109.47265 * 179.97438 * 9 7 2 11 11 H 1.08993 * 109.39498 * 305.20389 * 10 9 7 12 12 C 1.52580 * 109.39224 * 185.49527 * 10 9 7 13 13 C 1.52583 * 110.72899 * 169.18220 * 12 10 9 14 14 C 1.53091 * 109.95785 * 70.67582 * 13 12 10 15 15 S 1.81755 * 108.83954 * 296.97696 * 14 13 12 16 16 C 1.53098 * 109.38575 * 65.00472 * 10 9 7 17 17 H 0.97001 * 119.99906 * 0.02562 * 1 2 3 18 18 H 1.09005 * 109.46874 * 59.99957 * 9 7 2 19 19 H 1.08997 * 109.47128 * 300.00052 * 9 7 2 20 20 H 1.09004 * 109.22795 * 289.50255 * 12 10 9 21 21 H 1.09003 * 109.22662 * 48.85957 * 12 10 9 22 22 H 1.08996 * 109.38894 * 190.82856 * 13 12 10 23 23 H 1.09001 * 109.38507 * 310.52919 * 13 12 10 24 24 H 1.09002 * 109.57697 * 177.17331 * 14 13 12 25 25 H 1.09000 * 109.57780 * 56.77877 * 14 13 12 26 26 H 1.08999 * 109.58053 * 63.36677 * 16 10 9 27 27 H 1.09005 * 109.68225 * 303.04092 * 16 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 6 4.0215 -2.6366 -0.0010 11 1 3.5837 -3.1752 0.8393 12 6 5.5411 -2.6367 0.1362 13 6 6.0588 -4.0462 0.4072 14 6 5.9108 -4.9078 -0.8496 15 16 4.1452 -5.0570 -1.2543 16 6 3.6150 -3.3194 -1.3096 17 1 -0.4850 0.8401 -0.0004 18 1 3.8752 -0.6804 0.8889 19 1 3.8745 -0.6801 -0.8911 20 1 5.9849 -2.2625 -0.7864 21 1 5.8270 -1.9845 0.9615 22 1 7.1101 -3.9973 0.6907 23 1 5.4864 -4.4917 1.2208 24 1 6.3280 -5.8977 -0.6649 25 1 6.4371 -4.4365 -1.6796 26 1 4.0967 -2.8172 -2.1486 27 1 2.5325 -3.2715 -1.4279 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084233286.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:05 Heat of formation + Delta-G solvation = -47.100605 kcal Electronic energy + Delta-G solvation = -9705.183270 eV Core-core repulsion = 7973.218693 eV Total energy + Delta-G solvation = -1731.964576 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 186.077 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -38.51040 -35.07574 -33.30440 -29.50250 -28.15361 -25.01672 -22.45897 -20.99107 -18.88633 -17.58960 -16.34004 -16.16733 -15.44860 -14.89090 -14.52335 -14.24075 -14.01028 -13.68837 -13.24683 -12.64388 -12.60733 -12.25373 -12.04529 -11.80189 -11.64972 -11.37503 -10.89187 -10.75742 -10.47797 -8.65273 -8.27780 -6.31565 0.91452 1.35917 1.37820 1.49387 1.67971 2.36542 3.07594 3.80741 3.87592 4.03264 4.14486 4.35951 4.48476 4.62199 4.77342 4.90751 4.92994 5.06143 5.13454 5.17350 5.27874 5.41366 5.60488 5.68339 6.29703 6.76148 7.32578 8.89029 Molecular weight = 186.08amu Principal moments of inertia in cm(-1) A = 0.064413 B = 0.011170 C = 0.009987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 434.588271 B = 2506.187903 C = 2803.037845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C 0.002 3.998 3 Si 0.950 3.050 4 H -0.267 1.267 5 H -0.287 1.287 6 H -0.244 1.244 7 C -0.526 4.526 8 H 0.031 0.969 9 C -0.003 4.003 10 C -0.070 4.070 11 H 0.054 0.946 12 C -0.123 4.123 13 C -0.115 4.115 14 C -0.065 4.065 15 S -0.330 6.330 16 C -0.048 4.048 17 H 0.265 0.735 18 H 0.024 0.976 19 H 0.021 0.979 20 H 0.069 0.931 21 H 0.075 0.925 22 H 0.102 0.898 23 H 0.065 0.935 24 H 0.121 0.879 25 H 0.093 0.907 26 H 0.082 0.918 27 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.911 -5.251 -0.828 15.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.195 4.195 3 Si 0.774 3.226 4 H -0.192 1.192 5 H -0.213 1.213 6 H -0.167 1.167 7 C -0.564 4.564 8 H 0.050 0.950 9 C -0.042 4.042 10 C -0.090 4.090 11 H 0.073 0.927 12 C -0.161 4.161 13 C -0.154 4.154 14 C -0.213 4.213 15 S -0.103 6.103 16 C -0.196 4.196 17 H 0.074 0.926 18 H 0.043 0.957 19 H 0.039 0.961 20 H 0.087 0.913 21 H 0.093 0.907 22 H 0.120 0.880 23 H 0.083 0.917 24 H 0.139 0.861 25 H 0.112 0.888 26 H 0.100 0.900 27 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 14.171 -6.113 -1.024 15.468 hybrid contribution -0.028 1.795 0.107 1.799 sum 14.144 -4.318 -0.917 14.816 Atomic orbital electron populations 1.70083 1.08396 1.28053 1.52894 1.26035 0.95572 1.03557 0.94288 0.85658 0.79576 0.78261 0.79148 1.19237 1.21266 1.16720 1.21470 0.92065 0.92907 1.49926 0.95035 1.19597 0.93945 0.93885 0.96760 1.21120 0.95990 0.96408 0.95508 0.92709 1.21625 0.93643 0.97919 1.02865 1.21692 1.03031 0.94091 0.96584 1.23520 0.91241 1.05186 1.01310 1.86798 1.15226 1.14712 1.93612 1.23344 1.03629 0.91710 1.00898 0.92622 0.95739 0.96090 0.91279 0.90669 0.88005 0.91650 0.86089 0.88834 0.89975 0.90344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.32 13.96 21.45 0.30 -60.02 15 2 C 0.00 0.11 5.47 84.65 0.46 0.57 15 3 Si 0.95 43.97 27.47 68.60 1.88 45.85 15 4 H -0.27 -11.87 7.11 99.48 0.71 -11.17 15 5 H -0.29 -13.13 7.11 99.48 0.71 -12.43 15 6 H -0.24 -10.32 6.54 99.48 0.65 -9.67 15 7 C -0.53 -30.09 8.92 25.60 0.23 -29.86 15 8 H 0.03 2.01 7.32 -2.91 -0.02 1.99 15 9 C 0.00 -0.13 3.49 29.85 0.10 -0.03 15 10 C -0.07 -2.67 1.98 -10.90 -0.02 -2.69 15 11 H 0.05 2.29 8.05 -2.39 -0.02 2.27 15 12 C -0.12 -3.46 4.92 30.32 0.15 -3.31 15 13 C -0.12 -2.59 5.75 30.49 0.18 -2.42 15 14 C -0.06 -1.47 6.46 72.01 0.46 -1.00 15 15 S -0.33 -10.80 22.33 -56.49 -1.26 -12.06 15 16 C -0.05 -1.82 5.58 72.01 0.40 -1.42 15 17 H 0.26 15.65 8.31 -92.71 -0.77 14.88 15 18 H 0.02 1.09 7.14 -2.38 -0.02 1.07 15 19 H 0.02 0.92 7.57 -2.39 -0.02 0.90 15 20 H 0.07 1.80 8.08 -2.38 -0.02 1.78 15 21 H 0.07 2.02 8.04 -2.39 -0.02 2.00 15 22 H 0.10 1.66 8.14 -2.39 -0.02 1.64 15 23 H 0.06 1.62 8.05 -2.39 -0.02 1.60 15 24 H 0.12 2.19 8.14 -2.39 -0.02 2.17 15 25 H 0.09 1.88 8.14 -2.39 -0.02 1.86 15 26 H 0.08 2.90 8.14 -2.39 -0.02 2.88 15 27 H 0.08 3.55 6.88 -2.38 -0.02 3.53 15 Total: -1.00 -65.03 229.09 3.95 -61.07 By element: Atomic # 1 Polarization: 4.24 SS G_CDS: 1.07 Total: 5.31 kcal Atomic # 6 Polarization: -42.11 SS G_CDS: 1.97 Total: -40.15 kcal Atomic # 7 Polarization: -60.32 SS G_CDS: 0.30 Total: -60.02 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 1.88 Total: 45.85 kcal Atomic # 16 Polarization: -10.80 SS G_CDS: -1.26 Total: -12.06 kcal Total: -65.03 3.95 -61.07 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084233286.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.971 kcal (2) G-P(sol) polarization free energy of solvation -65.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds