Wall clock time and date at job start Mon Mar 30 2020 01:56:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86798 * 120.00283 * 2 1 4 4 H 1.48501 * 109.47551 * 240.00184 * 3 2 1 5 5 H 1.48505 * 109.47096 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47431 * 120.00113 * 3 2 1 7 7 C 1.37881 * 120.00000 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00112 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00001 * 0.02562 * 7 2 1 10 10 C 1.52995 * 109.46951 * 180.02562 * 9 7 2 11 11 H 1.09002 * 109.58017 * 54.74480 * 10 9 7 12 12 C 1.53100 * 109.57349 * 174.99782 * 10 9 7 13 13 C 1.52583 * 109.87443 * 182.87996 * 12 10 9 14 14 C 1.52629 * 110.70358 * 289.17454 * 13 12 10 15 15 C 1.53093 * 109.86977 * 70.82147 * 14 13 12 16 16 S 1.81745 * 109.57736 * 294.35259 * 10 9 7 17 17 H 0.97002 * 120.00026 * 359.97438 * 1 2 3 18 18 H 1.09000 * 109.46992 * 59.99691 * 9 7 2 19 19 H 1.09004 * 109.46768 * 299.99946 * 9 7 2 20 20 H 1.09002 * 109.39061 * 302.98061 * 12 10 9 21 21 H 1.08996 * 109.39261 * 62.78158 * 12 10 9 22 22 H 1.08994 * 109.22797 * 49.59978 * 13 12 10 23 23 H 1.09004 * 109.22484 * 168.95621 * 13 12 10 24 24 H 1.08997 * 109.46443 * 310.68086 * 14 13 12 25 25 H 1.08996 * 109.31837 * 190.87440 * 14 13 12 26 26 H 1.09003 * 109.57589 * 177.13079 * 15 14 13 27 27 H 1.08997 * 109.68472 * 56.80772 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0017 10 6 2.2452 -3.6621 -0.0015 11 1 2.9325 -3.5549 0.8378 12 6 1.4862 -4.9858 0.1231 13 6 2.4748 -6.1458 0.1960 14 6 3.1519 -6.3632 -1.1545 15 6 4.1222 -5.2142 -1.4411 16 16 3.1788 -3.6654 -1.5608 17 1 -0.4850 0.8401 0.0004 18 1 0.6246 -2.5563 -0.8919 19 1 0.6240 -2.5575 0.8881 20 1 0.8786 -4.9708 1.0280 21 1 0.8396 -5.1154 -0.7447 22 1 3.2324 -5.9250 0.9478 23 1 1.9425 -7.0538 0.4796 24 1 2.3953 -6.4019 -1.9381 25 1 3.7012 -7.3044 -1.1350 26 1 4.6403 -5.3999 -2.3820 27 1 4.8493 -5.1374 -0.6328 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084233297.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:10 Heat of formation + Delta-G solvation = -48.854801 kcal Electronic energy + Delta-G solvation = -9631.888941 eV Core-core repulsion = 7899.848297 eV Total energy + Delta-G solvation = -1732.040644 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 186.077 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -37.97449 -35.52062 -33.32980 -29.99838 -27.32282 -24.69266 -22.31281 -21.56738 -18.42940 -17.68261 -16.56967 -15.83816 -15.56411 -14.69112 -14.59637 -14.40802 -13.78842 -13.41530 -12.96417 -12.77423 -12.52828 -12.33693 -12.06804 -11.78576 -11.64100 -11.32263 -10.99302 -10.58758 -10.28753 -8.46870 -8.19735 -6.28208 1.03598 1.38676 1.42296 1.49863 1.92925 2.41487 3.14718 3.82288 3.92712 4.03452 4.20191 4.35801 4.50296 4.62135 4.81859 4.88689 5.04106 5.09939 5.15563 5.19534 5.36518 5.39231 5.55612 5.77679 6.20818 6.83856 7.39185 8.92030 Molecular weight = 186.08amu Principal moments of inertia in cm(-1) A = 0.068734 B = 0.011134 C = 0.010099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 407.271920 B = 2514.244901 C = 2771.833405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.002 3.998 3 Si 0.961 3.039 4 H -0.272 1.272 5 H -0.281 1.281 6 H -0.266 1.266 7 C -0.529 4.529 8 H 0.059 0.941 9 C 0.045 3.955 10 C -0.020 4.020 11 H 0.069 0.931 12 C -0.115 4.115 13 C -0.122 4.122 14 C -0.114 4.114 15 C -0.082 4.082 16 S -0.315 6.315 17 H 0.263 0.737 18 H -0.005 1.005 19 H 0.009 0.991 20 H 0.071 0.929 21 H 0.061 0.939 22 H 0.063 0.937 23 H 0.089 0.911 24 H 0.067 0.933 25 H 0.099 0.901 26 H 0.113 0.887 27 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.567 -11.859 -0.422 13.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.196 4.196 3 Si 0.785 3.215 4 H -0.197 1.197 5 H -0.207 1.207 6 H -0.190 1.190 7 C -0.567 4.567 8 H 0.077 0.923 9 C 0.007 3.993 10 C -0.149 4.149 11 H 0.087 0.913 12 C -0.155 4.155 13 C -0.159 4.159 14 C -0.153 4.153 15 C -0.230 4.230 16 S -0.089 6.089 17 H 0.072 0.928 18 H 0.014 0.986 19 H 0.027 0.973 20 H 0.089 0.911 21 H 0.080 0.920 22 H 0.082 0.918 23 H 0.108 0.892 24 H 0.085 0.915 25 H 0.118 0.882 26 H 0.131 0.869 27 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 6.438 -10.987 -1.248 12.795 hybrid contribution 0.024 0.422 0.926 1.018 sum 6.462 -10.564 -0.323 12.388 Atomic orbital electron populations 1.70072 1.07637 1.27748 1.51953 1.25891 0.95716 1.03096 0.94899 0.85562 0.78353 0.78462 0.79075 1.19703 1.20668 1.19047 1.21535 0.93373 0.91880 1.49927 0.92308 1.18832 0.93316 0.91681 0.95437 1.23178 0.98825 0.98791 0.94079 0.91267 1.21814 0.98388 0.92846 1.02406 1.21530 0.98412 0.98169 0.97831 1.21695 0.98256 0.97816 0.97537 1.23555 0.99607 0.93670 1.06126 1.87398 1.57309 1.32508 1.31647 0.92807 0.98639 0.97279 0.91093 0.91978 0.91780 0.89215 0.91457 0.88242 0.86885 0.89795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.91 13.29 21.45 0.28 -57.63 15 2 C 0.00 0.09 5.46 84.66 0.46 0.55 15 3 Si 0.96 45.91 29.54 68.60 2.03 47.94 15 4 H -0.27 -12.75 7.11 99.48 0.71 -12.04 15 5 H -0.28 -13.04 7.11 99.48 0.71 -12.33 15 6 H -0.27 -12.11 7.11 99.48 0.71 -11.40 15 7 C -0.53 -30.94 8.56 25.60 0.22 -30.73 15 8 H 0.06 3.40 7.63 -2.91 -0.02 3.37 15 9 C 0.05 2.43 4.45 29.85 0.13 2.57 15 10 C -0.02 -0.86 2.49 30.63 0.08 -0.78 15 11 H 0.07 2.94 8.14 -2.39 -0.02 2.92 15 12 C -0.12 -3.86 5.04 30.49 0.15 -3.70 15 13 C -0.12 -2.99 5.61 30.33 0.17 -2.82 15 14 C -0.11 -2.59 5.76 30.50 0.18 -2.41 15 15 C -0.08 -2.20 6.45 72.01 0.46 -1.73 15 16 S -0.31 -12.77 21.06 -56.49 -1.19 -13.96 15 17 H 0.26 15.38 8.31 -92.71 -0.77 14.61 15 18 H 0.00 -0.28 8.14 -2.39 -0.02 -0.30 15 19 H 0.01 0.52 8.14 -2.39 -0.02 0.50 15 20 H 0.07 2.31 8.14 -2.39 -0.02 2.29 15 21 H 0.06 2.16 8.05 -2.39 -0.02 2.14 15 22 H 0.06 1.55 8.08 -2.39 -0.02 1.53 15 23 H 0.09 1.76 8.14 -2.38 -0.02 1.74 15 24 H 0.07 1.63 8.05 -2.39 -0.02 1.61 15 25 H 0.10 1.62 8.14 -2.39 -0.02 1.60 15 26 H 0.11 2.62 8.14 -2.39 -0.02 2.60 15 27 H 0.08 2.12 8.14 -2.39 -0.02 2.10 15 Total: -1.00 -65.88 234.29 4.09 -61.79 By element: Atomic # 1 Polarization: -0.19 SS G_CDS: 1.11 Total: 0.93 kcal Atomic # 6 Polarization: -40.92 SS G_CDS: 1.85 Total: -39.06 kcal Atomic # 7 Polarization: -57.91 SS G_CDS: 0.28 Total: -57.63 kcal Atomic # 14 Polarization: 45.91 SS G_CDS: 2.03 Total: 47.94 kcal Atomic # 16 Polarization: -12.77 SS G_CDS: -1.19 Total: -13.96 kcal Total: -65.88 4.09 -61.79 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084233297.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.932 kcal (2) G-P(sol) polarization free energy of solvation -65.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds