Wall clock time and date at job start Mon Mar 30 2020 01:51:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86789 * 120.00142 * 2 1 4 4 H 1.48502 * 109.47428 * 240.00348 * 3 2 1 5 5 H 1.48501 * 109.47349 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46935 * 120.00195 * 3 2 1 7 7 C 1.37884 * 119.99630 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99828 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99820 * 359.71740 * 7 2 1 10 10 H 1.08990 * 110.45953 * 302.94851 * 9 7 2 11 11 C 1.54484 * 110.51087 * 65.56069 * 9 7 2 12 12 O 1.44425 * 104.80489 * 142.62134 * 11 9 7 13 13 C 1.44426 * 105.27109 * 319.48173 * 12 11 9 14 14 C 1.54478 * 104.80303 * 40.51627 * 13 12 11 15 15 H 1.09003 * 110.51135 * 94.66493 * 14 13 12 16 16 C 1.50700 * 110.51042 * 217.37206 * 14 13 12 17 17 O 1.20823 * 120.00442 * 22.78012 * 16 14 13 18 18 O 1.34237 * 120.00134 * 202.77977 * 16 14 13 19 19 H 0.96994 * 119.99761 * 359.97438 * 1 2 3 20 20 H 1.08996 * 110.36735 * 261.45000 * 11 9 7 21 21 H 1.09004 * 110.37400 * 23.78292 * 11 9 7 22 22 H 1.09000 * 110.36878 * 159.34349 * 13 12 11 23 23 H 1.08997 * 110.37578 * 281.68084 * 13 12 11 24 24 H 0.96698 * 116.99641 * 180.02562 * 18 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6962 1.2125 7 6 2.0045 -1.1942 -0.0005 8 1 3.0844 -1.1942 -0.0010 9 6 1.2509 -2.4992 0.0053 10 1 0.5831 -2.5496 0.8652 11 6 0.4562 -2.6712 -1.3082 12 8 0.5543 -4.0786 -1.6172 13 6 1.9161 -4.4430 -1.3035 14 6 2.2335 -3.6916 0.0084 15 1 2.0517 -4.3340 0.8701 16 6 3.6586 -3.2016 0.0048 17 8 4.2397 -3.0412 -1.0423 18 8 4.2825 -2.9433 1.1650 19 1 -0.4849 0.8400 0.0004 20 1 -0.5857 -2.3867 -1.1613 21 1 0.9044 -2.0758 -2.1037 22 1 1.9957 -5.5196 -1.1529 23 1 2.5883 -4.1194 -2.0982 24 1 5.1960 -2.6307 1.1120 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084233468.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:20 Heat of formation + Delta-G solvation = -166.747754 kcal Electronic energy + Delta-G solvation = -11866.669100 eV Core-core repulsion = 9550.930268 eV Total energy + Delta-G solvation = -2315.738832 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 186.072 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -41.59061 -39.53599 -36.90054 -35.28819 -32.96658 -30.16211 -26.78534 -25.25200 -23.03011 -21.10203 -19.39629 -18.52980 -17.53854 -17.19526 -16.34331 -16.05125 -15.89551 -15.62125 -14.41175 -13.92582 -13.65415 -13.00083 -12.77884 -12.75940 -12.47911 -12.34500 -11.91094 -11.58932 -11.48687 -11.01635 -10.71419 -10.54295 -8.27086 -6.37212 1.37464 1.39143 1.41150 1.46819 2.27987 2.38364 3.05882 3.20447 3.97425 3.99382 4.27708 4.55507 4.61403 4.79447 4.85636 4.97214 5.24241 5.41465 5.64247 5.76441 5.81195 6.15145 6.67237 7.17430 7.31295 8.82807 Molecular weight = 186.07amu Principal moments of inertia in cm(-1) A = 0.037504 B = 0.018923 C = 0.014069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.414445 B = 1479.348009 C = 1989.728719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.022 3.978 3 Si 0.952 3.048 4 H -0.278 1.278 5 H -0.278 1.278 6 H -0.266 1.266 7 C -0.541 4.541 8 H 0.057 0.943 9 C 0.031 3.969 10 H 0.038 0.962 11 C 0.074 3.926 12 O -0.397 6.397 13 C 0.061 3.939 14 C -0.121 4.121 15 H 0.124 0.876 16 C 0.522 3.478 17 O -0.558 6.558 18 O -0.511 6.511 19 H 0.267 0.733 20 H 0.077 0.923 21 H 0.031 0.969 22 H 0.126 0.874 23 H 0.059 0.941 24 H 0.419 0.581 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.072 -5.185 1.613 7.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.179 4.179 3 Si 0.777 3.223 4 H -0.204 1.204 5 H -0.203 1.203 6 H -0.191 1.191 7 C -0.578 4.578 8 H 0.075 0.925 9 C 0.012 3.988 10 H 0.056 0.944 11 C -0.003 4.003 12 O -0.317 6.317 13 C -0.016 4.016 14 C -0.140 4.140 15 H 0.142 0.858 16 C 0.368 3.632 17 O -0.450 6.450 18 O -0.323 6.323 19 H 0.076 0.924 20 H 0.095 0.905 21 H 0.050 0.950 22 H 0.144 0.856 23 H 0.077 0.923 24 H 0.279 0.721 Dipole moment (debyes) X Y Z Total from point charges 4.488 -5.295 1.291 7.060 hybrid contribution 0.972 1.507 -0.004 1.793 sum 5.460 -3.788 1.286 6.769 Atomic orbital electron populations 1.70002 1.06963 1.28087 1.49801 1.25670 0.95743 1.02372 0.94080 0.85692 0.78604 0.79168 0.78811 1.20361 1.20337 1.19120 1.21333 0.92576 0.91269 1.52636 0.92470 1.19946 0.92428 0.91449 0.94982 0.94416 1.23410 1.00716 0.79432 0.96709 1.88974 1.28978 1.26199 1.87507 1.23426 0.83964 1.00515 0.93680 1.22594 0.88903 1.00208 1.02290 0.85813 1.22798 0.88465 0.71336 0.80615 1.90607 1.68091 1.52075 1.34232 1.84536 1.33861 1.78655 1.35247 0.92351 0.90499 0.95027 0.85649 0.92259 0.72063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.77 12.66 21.45 0.27 -50.50 14 2 C 0.02 1.20 5.35 84.66 0.45 1.65 14 3 Si 0.95 42.92 29.54 68.60 2.03 44.95 14 4 H -0.28 -12.60 7.11 99.48 0.71 -11.89 14 5 H -0.28 -12.17 7.11 99.48 0.71 -11.47 14 6 H -0.27 -11.55 7.11 99.48 0.71 -10.85 14 7 C -0.54 -28.85 7.86 25.60 0.20 -28.65 14 8 H 0.06 3.04 5.30 -2.91 -0.02 3.03 14 9 C 0.03 1.51 2.98 -10.52 -0.03 1.47 14 10 H 0.04 1.95 8.14 -2.39 -0.02 1.93 14 11 C 0.07 3.59 6.42 72.49 0.47 4.05 14 12 O -0.40 -17.14 11.65 -148.98 -1.74 -18.87 14 13 C 0.06 2.26 7.12 72.48 0.52 2.77 14 14 C -0.12 -4.77 3.62 -10.52 -0.04 -4.81 14 15 H 0.12 4.13 8.14 -2.39 -0.02 4.11 14 16 C 0.52 20.80 4.84 71.24 0.34 21.14 14 17 O -0.56 -24.74 16.21 21.97 0.36 -24.39 14 18 O -0.51 -17.06 13.20 -51.48 -0.68 -17.74 14 19 H 0.27 14.19 8.31 -92.71 -0.77 13.42 14 20 H 0.08 3.86 8.08 -2.39 -0.02 3.84 14 21 H 0.03 1.64 7.86 -2.39 -0.02 1.63 14 22 H 0.13 3.54 8.14 -2.39 -0.02 3.52 14 23 H 0.06 2.36 6.83 -2.39 -0.02 2.34 14 24 H 0.42 9.83 9.10 -74.06 -0.67 9.15 14 Total: -1.00 -62.85 212.68 2.70 -60.15 By element: Atomic # 1 Polarization: 8.23 SS G_CDS: 0.55 Total: 8.77 kcal Atomic # 6 Polarization: -4.27 SS G_CDS: 1.91 Total: -2.36 kcal Atomic # 7 Polarization: -50.77 SS G_CDS: 0.27 Total: -50.50 kcal Atomic # 8 Polarization: -58.94 SS G_CDS: -2.06 Total: -61.00 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 2.03 Total: 44.95 kcal Total: -62.85 2.70 -60.15 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084233468.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.600 kcal (2) G-P(sol) polarization free energy of solvation -62.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds