Wall clock time and date at job start Mon Mar 30 2020 01:51:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48490 * 109.47405 * 240.00239 * 3 2 1 5 5 H 1.48503 * 109.46845 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47399 * 119.99834 * 3 2 1 7 7 C 1.37879 * 120.00338 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00381 * 180.27722 * 7 2 1 9 9 C 1.50706 * 119.99394 * 0.02562 * 7 2 1 10 10 H 1.08995 * 110.80225 * 62.17407 * 9 7 2 11 11 C 1.54992 * 110.90914 * 298.54241 * 9 7 2 12 12 O 1.44374 * 103.49091 * 204.77856 * 11 9 7 13 13 C 1.43744 * 106.97394 * 40.06606 * 12 11 9 14 14 C 1.54092 * 107.29318 * 333.48196 * 13 12 11 15 15 H 1.09001 * 110.48733 * 120.70816 * 14 13 12 16 16 C 1.50702 * 110.49207 * 243.35773 * 14 13 12 17 17 O 1.20815 * 120.00528 * 114.76384 * 16 14 13 18 18 O 1.34235 * 119.99465 * 294.77130 * 16 14 13 19 19 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 20 20 H 1.09000 * 110.62226 * 323.28362 * 11 9 7 21 21 H 1.09001 * 110.61439 * 86.12230 * 11 9 7 22 22 H 1.08995 * 109.87918 * 92.91166 * 13 12 11 23 23 H 1.08998 * 109.87727 * 214.06015 * 13 12 11 24 24 H 0.96700 * 116.99321 * 180.02562 * 18 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 0.0040 9 6 1.2510 -2.4991 -0.0017 10 1 0.6459 -2.5959 -0.9031 11 6 0.3748 -2.6331 1.2698 12 8 0.2249 -4.0604 1.4267 13 6 1.4963 -4.6530 1.1125 14 6 2.2207 -3.6970 0.1450 15 1 3.1693 -3.3700 0.5708 16 6 2.4412 -4.3634 -1.1885 17 8 1.8873 -3.9393 -2.1749 18 8 3.2531 -5.4284 -1.2804 19 1 -0.4849 0.8400 0.0004 20 1 0.8828 -2.2033 2.1331 21 1 -0.5943 -2.1571 1.1199 22 1 2.0836 -4.7744 2.0226 23 1 1.3461 -5.6207 0.6341 24 1 3.3637 -5.8218 -2.1568 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084233472.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:21 Heat of formation + Delta-G solvation = -169.046545 kcal Electronic energy + Delta-G solvation = -11671.889342 eV Core-core repulsion = 9356.050828 eV Total energy + Delta-G solvation = -2315.838515 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 186.072 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -41.54396 -39.60883 -37.05125 -35.21149 -32.97296 -30.27609 -26.80104 -25.01118 -23.12365 -21.09583 -19.18740 -18.63492 -17.82845 -17.00774 -16.54023 -16.18277 -15.74446 -15.56578 -14.22885 -14.02229 -13.74709 -12.97720 -12.85951 -12.64685 -12.54014 -12.35526 -12.01774 -11.58590 -11.41209 -11.06561 -10.67087 -10.38268 -8.20670 -6.31844 1.25220 1.43315 1.45232 1.52822 2.15104 2.40807 3.12416 3.20545 3.69580 4.14457 4.24698 4.58261 4.61987 4.81319 4.88873 4.97691 5.36979 5.53195 5.62950 5.76661 5.96778 6.23396 6.75565 7.07388 7.36354 8.89867 Molecular weight = 186.07amu Principal moments of inertia in cm(-1) A = 0.044996 B = 0.014459 C = 0.012235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 622.134428 B = 1936.108949 C = 2288.036707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.014 3.986 3 Si 0.964 3.036 4 H -0.275 1.275 5 H -0.284 1.284 6 H -0.262 1.262 7 C -0.536 4.536 8 H 0.065 0.935 9 C 0.028 3.972 10 H 0.018 0.982 11 C 0.073 3.927 12 O -0.410 6.410 13 C 0.065 3.935 14 C -0.117 4.117 15 H 0.129 0.871 16 C 0.495 3.505 17 O -0.547 6.547 18 O -0.504 6.504 19 H 0.265 0.735 20 H 0.052 0.948 21 H 0.074 0.926 22 H 0.094 0.906 23 H 0.094 0.906 24 H 0.425 0.575 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.236 -7.402 1.638 9.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.186 4.186 3 Si 0.789 3.211 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.186 1.186 7 C -0.574 4.574 8 H 0.083 0.917 9 C 0.010 3.990 10 H 0.036 0.964 11 C -0.003 4.003 12 O -0.330 6.330 13 C -0.012 4.012 14 C -0.136 4.136 15 H 0.146 0.854 16 C 0.339 3.661 17 O -0.437 6.437 18 O -0.318 6.318 19 H 0.074 0.926 20 H 0.070 0.930 21 H 0.093 0.907 22 H 0.112 0.888 23 H 0.112 0.888 24 H 0.286 0.714 Dipole moment (debyes) X Y Z Total from point charges 5.695 -7.120 1.822 9.298 hybrid contribution 0.340 0.902 -0.938 1.345 sum 6.034 -6.218 0.884 8.710 Atomic orbital electron populations 1.70048 1.07448 1.27966 1.50330 1.25833 0.95755 1.02875 0.94137 0.85513 0.78278 0.78286 0.79028 1.20046 1.20995 1.18628 1.21288 0.93201 0.90780 1.52107 0.91706 1.20134 0.92520 0.91693 0.94693 0.96425 1.23521 1.00814 0.78485 0.97481 1.88734 1.32582 1.21356 1.90295 1.23140 0.84793 0.95508 0.97747 1.22644 1.03643 0.96720 0.90637 0.85363 1.23365 0.74184 0.77185 0.91365 1.90687 1.48576 1.64042 1.40360 1.84502 1.62145 1.43232 1.41884 0.92565 0.93014 0.90743 0.88776 0.88800 0.71399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.18 12.06 21.45 0.26 -52.92 14 2 C 0.01 0.75 5.34 84.66 0.45 1.20 14 3 Si 0.96 42.83 29.54 68.60 2.03 44.85 14 4 H -0.28 -12.08 7.11 99.48 0.71 -11.38 14 5 H -0.28 -12.47 7.11 99.48 0.71 -11.76 14 6 H -0.26 -10.97 7.11 99.48 0.71 -10.26 14 7 C -0.54 -29.03 8.52 25.60 0.22 -28.81 14 8 H 0.06 3.34 7.60 -2.91 -0.02 3.32 14 9 C 0.03 1.45 2.42 -10.24 -0.02 1.43 14 10 H 0.02 1.05 6.88 -2.39 -0.02 1.04 14 11 C 0.07 3.55 6.44 72.66 0.47 4.02 14 12 O -0.41 -17.79 11.52 -148.98 -1.72 -19.50 14 13 C 0.06 2.24 7.36 72.35 0.53 2.77 14 14 C -0.12 -4.64 3.12 -10.55 -0.03 -4.68 14 15 H 0.13 4.62 7.71 -2.39 -0.02 4.60 14 16 C 0.50 18.76 7.41 71.24 0.53 19.29 14 17 O -0.55 -25.58 16.19 22.00 0.36 -25.23 14 18 O -0.50 -13.27 13.42 -51.46 -0.69 -13.96 14 19 H 0.27 14.57 8.31 -92.71 -0.77 13.80 14 20 H 0.05 2.45 8.04 -2.39 -0.02 2.43 14 21 H 0.07 3.98 7.44 -2.39 -0.02 3.97 14 22 H 0.09 2.65 8.14 -2.39 -0.02 2.63 14 23 H 0.09 2.84 7.68 -2.39 -0.02 2.82 14 24 H 0.42 7.05 9.10 -74.06 -0.67 6.37 14 Total: -1.00 -66.86 215.58 2.92 -63.94 By element: Atomic # 1 Polarization: 7.03 SS G_CDS: 0.54 Total: 7.58 kcal Atomic # 6 Polarization: -6.90 SS G_CDS: 2.14 Total: -4.76 kcal Atomic # 7 Polarization: -53.18 SS G_CDS: 0.26 Total: -52.92 kcal Atomic # 8 Polarization: -56.64 SS G_CDS: -2.05 Total: -58.69 kcal Atomic # 14 Polarization: 42.83 SS G_CDS: 2.03 Total: 44.85 kcal Total: -66.86 2.92 -63.94 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084233472.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.104 kcal (2) G-P(sol) polarization free energy of solvation -66.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds