Wall clock time and date at job start Mon Mar 30 2020 01:51:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86800 * 120.00200 * 2 1 4 4 H 1.48494 * 109.47208 * 264.89966 * 3 2 1 5 5 H 1.48509 * 109.46794 * 24.90048 * 3 2 1 6 6 H 1.48499 * 109.46970 * 144.89533 * 3 2 1 7 7 C 1.37873 * 119.99990 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99955 * 359.78961 * 7 2 1 9 9 C 1.50697 * 120.00245 * 179.78987 * 7 2 1 10 10 H 1.09003 * 110.43406 * 335.16117 * 9 7 2 11 11 C 1.54093 * 110.49275 * 97.71107 * 9 7 2 12 12 O 1.43745 * 107.30020 * 116.77850 * 11 9 7 13 13 C 1.44385 * 106.96933 * 26.51507 * 12 11 9 14 14 C 1.54818 * 110.60361 * 212.54553 * 9 7 2 15 15 H 1.09001 * 110.90013 * 338.58247 * 14 9 7 16 16 C 1.50696 * 110.90712 * 102.18295 * 14 9 7 17 17 O 1.20828 * 120.00413 * 0.02562 * 16 14 9 18 18 O 1.34229 * 119.99602 * 180.02562 * 16 14 9 19 19 H 0.97002 * 120.00124 * 359.97438 * 1 2 3 20 20 H 1.09003 * 109.88158 * 236.20516 * 11 9 7 21 21 H 1.09005 * 109.87565 * 357.20382 * 11 9 7 22 22 H 1.09001 * 110.61796 * 78.44091 * 13 12 11 23 23 H 1.08999 * 110.61589 * 201.43919 * 13 12 11 24 24 H 0.96707 * 116.99900 * 180.02562 * 18 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.6044 1.9841 -1.3945 5 1 1.3968 2.6814 0.5895 6 1 3.4886 1.4736 0.8051 7 6 2.0045 -1.1940 -0.0005 8 1 1.4644 -2.1293 0.0025 9 6 3.5114 -1.1941 -0.0053 10 1 3.8907 -0.2678 -0.4369 11 6 4.0554 -1.3858 1.4236 12 8 4.7843 -2.6246 1.4409 13 6 5.2513 -2.8576 0.0946 14 6 4.0537 -2.4168 -0.7850 15 1 3.3030 -3.2049 -0.8433 16 6 4.5167 -2.0146 -2.1615 17 8 4.4332 -0.8620 -2.5143 18 8 5.0218 -2.9370 -2.9957 19 1 -0.4850 0.8401 0.0004 20 1 4.7201 -0.5611 1.6809 21 1 3.2283 -1.4299 2.1322 22 1 6.1290 -2.2473 -0.1182 23 1 5.4710 -3.9143 -0.0579 24 1 5.3059 -2.6313 -3.8681 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084233476.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:22 Heat of formation + Delta-G solvation = -168.383461 kcal Electronic energy + Delta-G solvation = -11726.518238 eV Core-core repulsion = 9410.708476 eV Total energy + Delta-G solvation = -2315.809761 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 186.072 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -41.57591 -39.73400 -37.08102 -35.18701 -33.19311 -30.82753 -26.74371 -25.10469 -23.02567 -20.99477 -19.61870 -18.80617 -17.89757 -17.25877 -16.66092 -16.16273 -15.56254 -15.45804 -14.79176 -14.25280 -13.91429 -13.12591 -12.97510 -12.70525 -12.51391 -12.28687 -11.86721 -11.70965 -11.45038 -11.32087 -10.85878 -10.52500 -8.36437 -6.41336 1.20921 1.30234 1.35974 1.41879 2.10280 2.29869 2.95486 3.10760 3.67148 4.03325 4.19641 4.33646 4.47853 4.63398 4.83536 4.85081 5.02961 5.24654 5.55217 5.61810 5.90412 6.20218 6.64396 7.04327 7.24834 8.79276 Molecular weight = 186.07amu Principal moments of inertia in cm(-1) A = 0.038208 B = 0.017505 C = 0.014630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 732.663575 B = 1599.174064 C = 1913.441688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C 0.022 3.978 3 Si 0.933 3.067 4 H -0.278 1.278 5 H -0.281 1.281 6 H -0.244 1.244 7 C -0.514 4.514 8 H 0.044 0.956 9 C -0.012 4.012 10 H 0.055 0.945 11 C 0.049 3.951 12 O -0.388 6.388 13 C 0.068 3.932 14 C -0.114 4.114 15 H 0.116 0.884 16 C 0.501 3.499 17 O -0.546 6.546 18 O -0.502 6.502 19 H 0.268 0.732 20 H 0.055 0.945 21 H 0.079 0.921 22 H 0.072 0.928 23 H 0.130 0.870 24 H 0.427 0.573 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.930 -3.950 -2.637 12.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.177 4.177 3 Si 0.757 3.243 4 H -0.204 1.204 5 H -0.207 1.207 6 H -0.167 1.167 7 C -0.551 4.551 8 H 0.062 0.938 9 C -0.031 4.031 10 H 0.073 0.927 11 C -0.028 4.028 12 O -0.307 6.307 13 C -0.009 4.009 14 C -0.134 4.134 15 H 0.134 0.866 16 C 0.345 3.655 17 O -0.436 6.436 18 O -0.316 6.316 19 H 0.077 0.923 20 H 0.074 0.926 21 H 0.097 0.903 22 H 0.090 0.910 23 H 0.148 0.852 24 H 0.288 0.712 Dipole moment (debyes) X Y Z Total from point charges 11.660 -3.797 -2.158 12.451 hybrid contribution -0.250 1.243 -0.902 1.556 sum 11.410 -2.554 -3.060 12.086 Atomic orbital electron populations 1.70007 1.07955 1.28241 1.51695 1.25824 0.95431 1.02639 0.93757 0.85946 0.79689 0.79503 0.79123 1.20358 1.20678 1.16693 1.21070 0.89894 0.93402 1.50778 0.93777 1.20474 0.95576 0.94886 0.92200 0.92725 1.23661 0.94558 0.85648 0.98932 1.88777 1.72284 1.41241 1.28408 1.23562 0.93377 1.03610 0.80304 1.22704 1.00318 1.01636 0.88719 0.86633 1.23098 0.72314 0.82763 0.87371 1.90687 1.53107 1.22630 1.77188 1.84497 1.73969 1.42487 1.30643 0.92270 0.92635 0.90297 0.90960 0.85195 0.71196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.29 13.96 21.44 0.30 -57.99 14 2 C 0.02 1.29 5.47 84.65 0.46 1.75 14 3 Si 0.93 45.32 26.89 68.60 1.84 47.16 14 4 H -0.28 -13.79 7.11 99.48 0.71 -13.08 14 5 H -0.28 -13.19 7.11 99.48 0.71 -12.48 14 6 H -0.24 -10.80 7.00 99.48 0.70 -10.10 14 7 C -0.51 -28.84 8.65 25.60 0.22 -28.62 14 8 H 0.04 2.70 7.94 -2.91 -0.02 2.68 14 9 C -0.01 -0.56 1.98 -10.55 -0.02 -0.58 14 10 H 0.05 2.64 4.32 -2.39 -0.01 2.63 14 11 C 0.05 2.02 7.36 72.35 0.53 2.55 14 12 O -0.39 -14.45 11.52 -148.98 -1.72 -16.17 14 13 C 0.07 2.07 7.16 72.66 0.52 2.59 14 14 C -0.11 -4.30 3.17 -10.24 -0.03 -4.34 14 15 H 0.12 4.44 7.79 -2.39 -0.02 4.42 14 16 C 0.50 17.74 7.65 71.23 0.54 18.29 14 17 O -0.55 -23.57 16.21 21.96 0.36 -23.21 14 18 O -0.50 -12.46 13.42 -51.41 -0.69 -13.15 14 19 H 0.27 15.60 8.31 -92.71 -0.77 14.83 14 20 H 0.06 2.10 8.14 -2.39 -0.02 2.08 14 21 H 0.08 3.46 7.69 -2.38 -0.02 3.44 14 22 H 0.07 1.96 8.04 -2.39 -0.02 1.94 14 23 H 0.13 3.05 8.14 -2.39 -0.02 3.03 14 24 H 0.43 6.41 9.10 -74.05 -0.67 5.74 14 Total: -1.00 -69.46 214.13 2.86 -66.60 By element: Atomic # 1 Polarization: 4.57 SS G_CDS: 0.54 Total: 5.11 kcal Atomic # 6 Polarization: -10.59 SS G_CDS: 2.23 Total: -8.36 kcal Atomic # 7 Polarization: -58.29 SS G_CDS: 0.30 Total: -57.99 kcal Atomic # 8 Polarization: -50.48 SS G_CDS: -2.05 Total: -52.53 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 1.84 Total: 47.16 kcal Total: -69.46 2.86 -66.60 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084233476.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.779 kcal (2) G-P(sol) polarization free energy of solvation -69.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds