Wall clock time and date at job start Mon Mar 30 2020 01:51:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86798 * 120.00357 * 2 1 4 4 H 1.48500 * 109.47243 * 269.99904 * 3 2 1 5 5 H 1.48499 * 109.47034 * 29.99663 * 3 2 1 6 6 H 1.48501 * 109.47555 * 149.99728 * 3 2 1 7 7 C 1.37878 * 119.99690 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00585 * 0.02562 * 7 2 1 9 9 C 1.50704 * 119.99934 * 180.02562 * 7 2 1 10 10 H 1.08991 * 110.46037 * 51.95306 * 9 7 2 11 11 C 1.54480 * 110.62418 * 289.27029 * 9 7 2 12 12 O 1.44522 * 104.87693 * 217.39573 * 11 9 7 13 13 C 1.44424 * 105.22643 * 40.35645 * 12 11 9 14 14 C 1.54470 * 104.90114 * 319.63832 * 13 12 11 15 15 H 1.09001 * 110.51737 * 265.14524 * 14 13 12 16 16 C 1.50701 * 110.51400 * 142.56739 * 14 13 12 17 17 O 1.20829 * 119.99960 * 334.19841 * 16 14 13 18 18 O 1.34233 * 120.00378 * 154.19694 * 16 14 13 19 19 H 0.97008 * 119.99961 * 0.02562 * 1 2 3 20 20 H 1.09005 * 110.37636 * 336.14638 * 11 9 7 21 21 H 1.08994 * 110.37767 * 98.38192 * 11 9 7 22 22 H 1.09007 * 110.37366 * 200.75073 * 13 12 11 23 23 H 1.09003 * 110.37371 * 78.52620 * 13 12 11 24 24 H 0.96692 * 116.99902 * 180.02562 * 18 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0044 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5114 -1.1942 0.0011 10 1 3.8921 -0.5647 0.8053 11 6 4.0561 -0.7173 -1.3636 12 8 5.2254 -1.5326 -1.6017 13 6 4.8604 -2.8579 -1.1590 14 6 4.0528 -2.6348 0.1387 15 1 4.7005 -2.7198 1.0113 16 6 2.9157 -3.6197 0.2290 17 8 2.4486 -4.0972 -0.7778 18 8 2.4217 -3.9666 1.4280 19 1 -0.4850 0.8401 -0.0004 20 1 3.3154 -0.8817 -2.1463 21 1 4.3292 0.3368 -1.3159 22 1 5.7531 -3.4487 -0.9535 23 1 4.2436 -3.3523 -1.9095 24 1 1.6929 -4.6019 1.4354 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084233479.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:23 Heat of formation + Delta-G solvation = -138.149782 kcal Electronic energy + Delta-G solvation = -11890.528050 eV Core-core repulsion = 9576.029320 eV Total energy + Delta-G solvation = -2314.498730 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 186.072 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -40.00101 -38.00516 -35.29913 -33.28981 -31.41249 -29.01709 -24.65539 -23.74794 -21.34553 -19.31789 -17.88666 -16.93580 -15.97948 -15.58460 -14.65113 -14.43464 -14.21371 -13.92429 -12.67433 -12.51442 -12.22663 -11.44741 -11.04641 -10.97550 -10.69851 -10.48368 -10.07535 -10.02033 -9.71224 -9.25276 -9.06163 -8.71379 -6.22863 -4.26879 3.04518 3.18468 3.26741 3.27534 3.77406 4.26826 4.64106 5.03538 5.41817 5.43518 5.68767 5.98978 6.14771 6.25756 6.30154 6.41399 6.60387 6.99463 7.22470 7.23478 7.59578 8.26156 8.65731 8.77429 9.34574 10.89128 Molecular weight = 186.07amu Principal moments of inertia in cm(-1) A = 0.038241 B = 0.019991 C = 0.014762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 732.013349 B = 1400.284315 C = 1896.323090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.079 3.921 3 Si 0.871 3.129 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.260 1.260 7 C -0.527 4.527 8 H 0.083 0.917 9 C -0.002 4.002 10 H 0.057 0.943 11 C 0.036 3.964 12 O -0.386 6.386 13 C 0.060 3.940 14 C -0.108 4.108 15 H 0.097 0.903 16 C 0.521 3.479 17 O -0.529 6.529 18 O -0.515 6.515 19 H 0.267 0.733 20 H 0.068 0.932 21 H 0.073 0.927 22 H 0.086 0.914 23 H 0.075 0.925 24 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.283 -3.557 1.404 8.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.125 4.125 3 Si 0.698 3.302 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.185 1.185 7 C -0.564 4.564 8 H 0.101 0.899 9 C -0.021 4.021 10 H 0.075 0.925 11 C -0.041 4.041 12 O -0.305 6.305 13 C -0.017 4.017 14 C -0.128 4.128 15 H 0.116 0.884 16 C 0.365 3.635 17 O -0.418 6.418 18 O -0.326 6.326 19 H 0.077 0.923 20 H 0.086 0.914 21 H 0.091 0.909 22 H 0.104 0.896 23 H 0.093 0.907 24 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges 7.510 -3.205 1.036 8.231 hybrid contribution -0.488 0.534 0.121 0.734 sum 7.022 -2.671 1.157 7.602 Atomic orbital electron populations 1.69885 1.06283 1.27314 1.49069 1.24971 0.94770 0.99001 0.93777 0.86979 0.80526 0.83679 0.79020 1.19732 1.21105 1.18469 1.21019 0.87465 0.95135 1.52830 0.89944 1.20543 0.98051 0.89062 0.94425 0.92454 1.24212 0.86309 0.94307 0.99225 1.88998 1.36782 1.19694 1.85032 1.23300 0.98118 0.86398 0.93908 1.22360 0.93880 0.96049 1.00514 0.88429 1.22621 0.82575 0.78096 0.80222 1.90635 1.59984 1.54035 1.37142 1.84544 1.51680 1.61413 1.34949 0.92279 0.91375 0.90880 0.89614 0.90664 0.74270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.56 13.96 55.43 0.77 -25.78 14 2 C 0.08 2.20 5.47 -17.82 -0.10 2.10 14 3 Si 0.87 20.59 25.35 -169.99 -4.31 16.28 14 4 H -0.27 -6.27 7.11 56.52 0.40 -5.87 14 5 H -0.29 -6.73 7.11 56.52 0.40 -6.33 14 6 H -0.26 -5.81 6.32 56.52 0.36 -5.45 14 7 C -0.53 -14.42 8.38 -34.44 -0.29 -14.71 14 8 H 0.08 2.46 5.56 -52.49 -0.29 2.17 14 9 C 0.00 -0.04 2.51 -90.20 -0.23 -0.26 14 10 H 0.06 1.30 6.68 -51.93 -0.35 0.96 14 11 C 0.04 0.79 6.01 37.93 0.23 1.02 14 12 O -0.39 -7.90 11.66 -35.23 -0.41 -8.31 14 13 C 0.06 1.10 7.12 37.93 0.27 1.37 14 14 C -0.11 -2.15 3.62 -90.21 -0.33 -2.48 14 15 H 0.10 1.66 8.14 -51.93 -0.42 1.24 14 16 C 0.52 10.91 4.85 36.01 0.17 11.08 14 17 O -0.53 -12.32 16.05 -18.75 -0.30 -12.62 14 18 O -0.52 -9.46 13.39 -39.26 -0.53 -9.98 14 19 H 0.27 7.45 8.31 -40.82 -0.34 7.11 14 20 H 0.07 1.59 7.87 -51.93 -0.41 1.18 14 21 H 0.07 1.53 6.48 -51.93 -0.34 1.19 14 22 H 0.09 1.27 8.14 -51.93 -0.42 0.84 14 23 H 0.08 1.47 6.86 -51.93 -0.36 1.12 14 24 H 0.40 5.56 9.10 45.56 0.41 5.97 14 LS Contribution 206.05 15.07 3.11 3.11 Total: -1.00 -31.77 206.05 -3.28 -35.06 By element: Atomic # 1 Polarization: 5.48 SS G_CDS: -1.35 Total: 4.13 kcal Atomic # 6 Polarization: -1.61 SS G_CDS: -0.27 Total: -1.88 kcal Atomic # 7 Polarization: -26.56 SS G_CDS: 0.77 Total: -25.78 kcal Atomic # 8 Polarization: -29.68 SS G_CDS: -1.24 Total: -30.91 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -4.31 Total: 16.28 kcal Total LS contribution 3.11 Total: 3.11 kcal Total: -31.77 -3.28 -35.06 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084233479.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.093 kcal (2) G-P(sol) polarization free energy of solvation -31.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds