Wall clock time and date at job start Mon Mar 30 2020 01:51:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86798 * 120.00357 * 2 1 4 4 H 1.48500 * 109.47243 * 269.99904 * 3 2 1 5 5 H 1.48499 * 109.47034 * 29.99663 * 3 2 1 6 6 H 1.48501 * 109.47555 * 149.99728 * 3 2 1 7 7 C 1.37878 * 119.99690 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00585 * 0.02562 * 7 2 1 9 9 C 1.50704 * 119.99934 * 180.02562 * 7 2 1 10 10 H 1.08991 * 110.46037 * 51.95306 * 9 7 2 11 11 C 1.54480 * 110.62418 * 289.27029 * 9 7 2 12 12 O 1.44522 * 104.87693 * 217.39573 * 11 9 7 13 13 C 1.44424 * 105.22643 * 40.35645 * 12 11 9 14 14 C 1.54470 * 104.90114 * 319.63832 * 13 12 11 15 15 H 1.09001 * 110.51737 * 265.14524 * 14 13 12 16 16 C 1.50701 * 110.51400 * 142.56739 * 14 13 12 17 17 O 1.20829 * 119.99960 * 334.19841 * 16 14 13 18 18 O 1.34233 * 120.00378 * 154.19694 * 16 14 13 19 19 H 0.97008 * 119.99961 * 0.02562 * 1 2 3 20 20 H 1.09005 * 110.37636 * 336.14638 * 11 9 7 21 21 H 1.08994 * 110.37767 * 98.38192 * 11 9 7 22 22 H 1.09007 * 110.37366 * 200.75073 * 13 12 11 23 23 H 1.09003 * 110.37371 * 78.52620 * 13 12 11 24 24 H 0.96692 * 116.99902 * 180.02562 * 18 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0044 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5114 -1.1942 0.0011 10 1 3.8921 -0.5647 0.8053 11 6 4.0561 -0.7173 -1.3636 12 8 5.2254 -1.5326 -1.6017 13 6 4.8604 -2.8579 -1.1590 14 6 4.0528 -2.6348 0.1387 15 1 4.7005 -2.7198 1.0113 16 6 2.9157 -3.6197 0.2290 17 8 2.4486 -4.0972 -0.7778 18 8 2.4217 -3.9666 1.4280 19 1 -0.4850 0.8401 -0.0004 20 1 3.3154 -0.8817 -2.1463 21 1 4.3292 0.3368 -1.3159 22 1 5.7531 -3.4487 -0.9535 23 1 4.2436 -3.3523 -1.9095 24 1 1.6929 -4.6019 1.4354 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084233479.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:23 Heat of formation + Delta-G solvation = -163.249974 kcal Electronic energy + Delta-G solvation = -11891.616476 eV Core-core repulsion = 9576.029320 eV Total energy + Delta-G solvation = -2315.587156 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 186.072 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -41.63840 -39.62395 -36.91265 -35.24934 -33.23733 -30.72777 -26.62360 -25.31779 -23.07842 -20.99723 -19.69255 -18.66757 -17.69543 -17.26212 -16.34148 -16.08570 -16.00341 -15.65717 -14.62426 -14.19664 -13.86753 -13.07420 -12.78802 -12.72213 -12.37275 -12.21453 -11.81735 -11.76162 -11.56477 -11.11237 -10.82330 -10.69934 -8.34894 -6.43879 1.33852 1.36182 1.40336 1.46055 2.25489 2.33262 2.96765 3.08515 3.83444 3.91291 4.15032 4.45684 4.46561 4.59609 4.80591 4.82880 4.94203 5.22076 5.36045 5.73683 5.81717 6.14290 6.61464 7.14901 7.21772 8.80657 Molecular weight = 186.07amu Principal moments of inertia in cm(-1) A = 0.038241 B = 0.019991 C = 0.014762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 732.013349 B = 1400.284315 C = 1896.323090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C 0.019 3.981 3 Si 0.932 3.068 4 H -0.262 1.262 5 H -0.287 1.287 6 H -0.231 1.231 7 C -0.530 4.530 8 H 0.045 0.955 9 C -0.009 4.009 10 H 0.070 0.930 11 C 0.041 3.959 12 O -0.383 6.383 13 C 0.061 3.939 14 C -0.111 4.111 15 H 0.135 0.865 16 C 0.518 3.482 17 O -0.561 6.561 18 O -0.512 6.512 19 H 0.268 0.732 20 H 0.045 0.955 21 H 0.089 0.911 22 H 0.132 0.868 23 H 0.057 0.943 24 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.588 -3.013 1.951 10.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.180 4.180 3 Si 0.755 3.245 4 H -0.187 1.187 5 H -0.213 1.213 6 H -0.154 1.154 7 C -0.567 4.567 8 H 0.063 0.937 9 C -0.028 4.028 10 H 0.088 0.912 11 C -0.036 4.036 12 O -0.302 6.302 13 C -0.016 4.016 14 C -0.130 4.130 15 H 0.153 0.847 16 C 0.363 3.637 17 O -0.453 6.453 18 O -0.324 6.324 19 H 0.077 0.923 20 H 0.063 0.937 21 H 0.107 0.893 22 H 0.150 0.850 23 H 0.076 0.924 24 H 0.278 0.722 Dipole moment (debyes) X Y Z Total from point charges 9.835 -2.689 1.600 10.321 hybrid contribution -1.270 0.230 -0.022 1.291 sum 8.565 -2.460 1.577 9.049 Atomic orbital electron populations 1.70040 1.08384 1.28383 1.51305 1.25900 0.95493 1.03161 0.93455 0.85992 0.80209 0.78511 0.79759 1.18711 1.21296 1.15442 1.21266 0.89985 0.93762 1.51734 0.93708 1.20547 0.95167 0.91666 0.95427 0.91223 1.23980 0.86472 0.95467 0.97681 1.89004 1.35692 1.20339 1.85155 1.23468 0.99708 0.85805 0.92624 1.22493 0.93957 0.93664 1.02875 0.84739 1.22959 0.82653 0.77877 0.80193 1.90619 1.61069 1.55356 1.38291 1.84489 1.52352 1.61828 1.33763 0.92260 0.93689 0.89297 0.84982 0.92445 0.72226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.58 13.96 21.45 0.30 -57.28 14 2 C 0.02 1.04 5.47 84.66 0.46 1.50 14 3 Si 0.93 41.35 25.35 68.60 1.74 43.09 14 4 H -0.26 -11.16 7.11 99.48 0.71 -10.46 14 5 H -0.29 -12.73 7.11 99.48 0.71 -12.02 14 6 H -0.23 -9.13 6.32 99.48 0.63 -8.51 14 7 C -0.53 -29.01 8.38 25.60 0.21 -28.79 14 8 H 0.04 2.75 5.56 -2.91 -0.02 2.73 14 9 C -0.01 -0.39 2.51 -10.52 -0.03 -0.42 14 10 H 0.07 2.91 6.68 -2.39 -0.02 2.89 14 11 C 0.04 1.70 6.01 72.49 0.44 2.13 14 12 O -0.38 -14.43 11.66 -148.98 -1.74 -16.17 14 13 C 0.06 2.05 7.12 72.48 0.52 2.57 14 14 C -0.11 -4.10 3.62 -10.53 -0.04 -4.13 14 15 H 0.13 3.98 8.14 -2.39 -0.02 3.96 14 16 C 0.52 21.21 4.85 71.24 0.35 21.55 14 17 O -0.56 -26.33 16.05 21.96 0.35 -25.98 14 18 O -0.51 -18.23 13.39 -51.44 -0.69 -18.92 14 19 H 0.27 15.32 8.31 -92.70 -0.77 14.55 14 20 H 0.04 2.07 7.87 -2.38 -0.02 2.05 14 21 H 0.09 3.41 6.48 -2.39 -0.02 3.39 14 22 H 0.13 3.27 8.14 -2.38 -0.02 3.25 14 23 H 0.06 2.17 6.86 -2.39 -0.02 2.15 14 24 H 0.42 11.34 9.10 -74.06 -0.67 10.67 14 Total: -1.00 -68.53 206.05 2.35 -66.18 By element: Atomic # 1 Polarization: 14.19 SS G_CDS: 0.48 Total: 14.66 kcal Atomic # 6 Polarization: -7.50 SS G_CDS: 1.91 Total: -5.59 kcal Atomic # 7 Polarization: -57.58 SS G_CDS: 0.30 Total: -57.28 kcal Atomic # 8 Polarization: -59.00 SS G_CDS: -2.07 Total: -61.07 kcal Atomic # 14 Polarization: 41.35 SS G_CDS: 1.74 Total: 43.09 kcal Total: -68.53 2.35 -66.18 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084233479.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.067 kcal (2) G-P(sol) polarization free energy of solvation -68.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds