Wall clock time and date at job start Mon Mar 30 2020 01:47:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86805 * 120.00028 * 2 1 4 4 H 1.48506 * 109.46980 * 270.00181 * 3 2 1 5 5 H 1.48499 * 109.47167 * 30.00130 * 3 2 1 6 6 H 1.48498 * 109.47198 * 150.00464 * 3 2 1 7 7 C 1.37872 * 119.99847 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00419 * 359.97438 * 7 2 1 9 9 C 1.50707 * 119.99857 * 179.97438 * 7 2 1 10 10 H 1.09002 * 109.47916 * 59.99733 * 9 7 2 11 11 C 1.53164 * 109.48347 * 180.02562 * 9 7 2 12 12 S 1.81622 * 109.03676 * 177.78338 * 11 9 7 13 13 C 1.81618 * 102.56047 * 303.50438 * 12 11 9 14 14 C 1.53171 * 109.03690 * 56.49013 * 13 12 11 15 15 C 1.50652 * 109.47709 * 299.98280 * 9 7 2 16 16 O 1.20770 * 119.84024 * 357.52689 * 15 9 7 17 17 H 0.97007 * 120.00017 * 359.97438 * 1 2 3 18 18 H 1.09007 * 109.54194 * 297.64858 * 11 9 7 19 19 H 1.08999 * 109.54793 * 57.90938 * 11 9 7 20 20 H 1.09004 * 109.54653 * 296.62768 * 13 12 11 21 21 H 1.08995 * 109.61871 * 176.40301 * 13 12 11 22 22 H 1.08993 * 109.48055 * 182.21912 * 14 13 12 23 23 H 1.09000 * 109.47583 * 62.19971 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.6999 7 6 2.0044 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 1 3.8753 -0.6804 0.8888 11 6 4.0224 -2.6380 -0.0023 12 16 5.8373 -2.6242 -0.0694 13 6 6.1697 -1.6608 -1.5727 14 6 5.4917 -0.2928 -1.4495 15 6 4.0134 -0.4840 -1.2314 16 8 3.2267 -0.0654 -2.0466 17 1 -0.4850 0.8401 0.0004 18 1 3.6949 -3.1413 0.9075 19 1 3.6292 -3.1632 -0.8727 20 1 5.7713 -2.1884 -2.4394 21 1 7.2448 -1.5257 -1.6906 22 1 5.6535 0.2767 -2.3646 23 1 5.9168 0.2486 -0.6044 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084233584.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:12 Heat of formation + Delta-G solvation = -38.007799 kcal Electronic energy + Delta-G solvation = -9831.973821 eV Core-core repulsion = 7964.570444 eV Total energy + Delta-G solvation = -1867.403377 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 186.046 amu Computer time = 0.07 seconds Orbital eigenvalues (eV) -38.98568 -33.87582 -32.86678 -31.15827 -25.79538 -24.79709 -21.84045 -18.81519 -17.27159 -15.86000 -15.18806 -15.03426 -14.24637 -13.89315 -13.63359 -13.03393 -12.58715 -12.13706 -11.74252 -11.64825 -11.37253 -10.63784 -10.20841 -10.06598 -9.58230 -9.23245 -8.71782 -8.45447 -7.40823 -6.14926 -4.20007 2.07339 2.72266 2.87873 3.25090 3.33460 3.40785 4.38184 4.69221 5.05796 5.18899 5.33166 5.52614 5.71650 5.76944 5.82320 5.98799 6.22137 6.63011 6.90294 7.45787 8.23970 8.45985 8.82673 9.45638 10.96478 Molecular weight = 186.05amu Principal moments of inertia in cm(-1) A = 0.057494 B = 0.017546 C = 0.015203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 486.892757 B = 1595.404086 C = 1841.321291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.094 3.906 3 Si 0.868 3.132 4 H -0.264 1.264 5 H -0.292 1.292 6 H -0.268 1.268 7 C -0.518 4.518 8 H 0.081 0.919 9 C -0.027 4.027 10 H 0.068 0.932 11 C -0.040 4.040 12 S -0.298 6.298 13 C -0.065 4.065 14 C -0.180 4.180 15 C 0.321 3.679 16 O -0.421 6.421 17 H 0.266 0.734 18 H 0.110 0.890 19 H 0.081 0.919 20 H 0.083 0.917 21 H 0.106 0.894 22 H 0.086 0.914 23 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.460 -1.642 -1.066 11.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.111 4.111 3 Si 0.697 3.303 4 H -0.189 1.189 5 H -0.219 1.219 6 H -0.193 1.193 7 C -0.556 4.556 8 H 0.099 0.901 9 C -0.048 4.048 10 H 0.086 0.914 11 C -0.188 4.188 12 S -0.070 6.070 13 C -0.213 4.213 14 C -0.219 4.219 15 C 0.194 3.806 16 O -0.293 6.293 17 H 0.076 0.924 18 H 0.128 0.872 19 H 0.100 0.900 20 H 0.102 0.898 21 H 0.124 0.876 22 H 0.104 0.896 23 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 11.618 -1.810 -0.814 11.786 hybrid contribution -0.375 1.513 -0.840 1.770 sum 11.242 -0.297 -1.654 11.367 Atomic orbital electron populations 1.69860 1.06331 1.27258 1.49137 1.24877 0.94627 0.98914 0.92662 0.87075 0.80178 0.84257 0.78801 1.18915 1.21904 1.19343 1.20573 0.86644 0.95161 1.53229 0.90094 1.19975 0.99114 0.91667 0.94085 0.91402 1.23404 0.88489 1.00651 1.06217 1.86506 1.12771 1.71448 1.36325 1.23162 1.03880 0.96322 0.97957 1.22558 0.97328 0.97665 1.04389 1.25672 0.89146 0.77104 0.88704 1.90290 1.58744 1.37648 1.42595 0.92379 0.87168 0.90013 0.89821 0.87555 0.89583 0.88423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.53 13.96 55.43 0.77 -26.76 14 2 C 0.09 2.75 5.11 -17.82 -0.09 2.66 14 3 Si 0.87 22.38 24.29 -169.99 -4.13 18.25 14 4 H -0.26 -6.98 6.56 56.52 0.37 -6.61 14 5 H -0.29 -7.42 7.11 56.52 0.40 -7.01 14 6 H -0.27 -6.39 6.52 56.52 0.37 -6.02 14 7 C -0.52 -14.45 8.73 -34.44 -0.30 -14.75 14 8 H 0.08 2.40 7.99 -52.49 -0.42 1.98 14 9 C -0.03 -0.62 1.87 -92.86 -0.17 -0.80 14 10 H 0.07 1.55 7.20 -51.93 -0.37 1.17 14 11 C -0.04 -0.75 5.70 37.24 0.21 -0.54 14 12 S -0.30 -4.87 22.23 -107.50 -2.39 -7.26 14 13 C -0.06 -0.93 6.48 37.25 0.24 -0.69 14 14 C -0.18 -3.00 6.00 -27.82 -0.17 -3.16 14 15 C 0.32 7.10 4.34 -29.08 -0.13 6.97 14 16 O -0.42 -10.90 13.52 5.99 0.08 -10.82 14 17 H 0.27 7.76 8.31 -40.82 -0.34 7.42 14 18 H 0.11 1.99 8.14 -51.92 -0.42 1.57 14 19 H 0.08 1.55 8.14 -51.93 -0.42 1.13 14 20 H 0.08 1.17 8.14 -51.92 -0.42 0.75 14 21 H 0.11 1.21 8.14 -51.93 -0.42 0.79 14 22 H 0.09 1.31 8.12 -51.93 -0.42 0.89 14 23 H 0.10 1.52 8.14 -51.93 -0.42 1.10 14 LS Contribution 204.74 15.07 3.09 3.09 Total: -1.00 -31.15 204.74 -5.51 -36.65 By element: Atomic # 1 Polarization: -0.32 SS G_CDS: -2.53 Total: -2.85 kcal Atomic # 6 Polarization: -9.90 SS G_CDS: -0.40 Total: -10.30 kcal Atomic # 7 Polarization: -27.53 SS G_CDS: 0.77 Total: -26.76 kcal Atomic # 8 Polarization: -10.90 SS G_CDS: 0.08 Total: -10.82 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -4.13 Total: 18.25 kcal Atomic # 16 Polarization: -4.87 SS G_CDS: -2.39 Total: -7.26 kcal Total LS contribution 3.09 Total: 3.09 kcal Total: -31.15 -5.51 -36.65 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084233584.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.353 kcal (2) G-P(sol) polarization free energy of solvation -31.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.07 seconds