Wall clock time and date at job start Mon Mar 30 2020 01:47:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86805 * 120.00028 * 2 1 4 4 H 1.48506 * 109.46980 * 270.00181 * 3 2 1 5 5 H 1.48499 * 109.47167 * 30.00130 * 3 2 1 6 6 H 1.48498 * 109.47198 * 150.00464 * 3 2 1 7 7 C 1.37872 * 119.99847 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00419 * 359.97438 * 7 2 1 9 9 C 1.50707 * 119.99857 * 179.97438 * 7 2 1 10 10 H 1.09002 * 109.47916 * 59.99733 * 9 7 2 11 11 C 1.53164 * 109.48347 * 180.02562 * 9 7 2 12 12 S 1.81622 * 109.03676 * 177.78338 * 11 9 7 13 13 C 1.81618 * 102.56047 * 303.50438 * 12 11 9 14 14 C 1.53171 * 109.03690 * 56.49013 * 13 12 11 15 15 C 1.50652 * 109.47709 * 299.98280 * 9 7 2 16 16 O 1.20770 * 119.84024 * 357.52689 * 15 9 7 17 17 H 0.97007 * 120.00017 * 359.97438 * 1 2 3 18 18 H 1.09007 * 109.54194 * 297.64858 * 11 9 7 19 19 H 1.08999 * 109.54793 * 57.90938 * 11 9 7 20 20 H 1.09004 * 109.54653 * 296.62768 * 13 12 11 21 21 H 1.08995 * 109.61871 * 176.40301 * 13 12 11 22 22 H 1.08993 * 109.48055 * 182.21912 * 14 13 12 23 23 H 1.09000 * 109.47583 * 62.19971 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.6999 7 6 2.0044 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 1 3.8753 -0.6804 0.8888 11 6 4.0224 -2.6380 -0.0023 12 16 5.8373 -2.6242 -0.0694 13 6 6.1697 -1.6608 -1.5727 14 6 5.4917 -0.2928 -1.4495 15 6 4.0134 -0.4840 -1.2314 16 8 3.2267 -0.0654 -2.0466 17 1 -0.4850 0.8401 0.0004 18 1 3.6949 -3.1413 0.9075 19 1 3.6292 -3.1632 -0.8727 20 1 5.7713 -2.1884 -2.4394 21 1 7.2448 -1.5257 -1.6906 22 1 5.6535 0.2767 -2.3646 23 1 5.9168 0.2486 -0.6044 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084233584.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:12 Heat of formation + Delta-G solvation = -59.491722 kcal Electronic energy + Delta-G solvation = -9832.905434 eV Core-core repulsion = 7964.570444 eV Total energy + Delta-G solvation = -1868.334990 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 186.046 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -40.75910 -35.72116 -34.57091 -32.94027 -27.68563 -26.28406 -23.53794 -20.56655 -19.25262 -17.38814 -16.89341 -16.71072 -16.07204 -15.49809 -15.28602 -14.58734 -14.45897 -13.63966 -13.48465 -13.18526 -12.85851 -12.46538 -12.11452 -11.85344 -11.62895 -10.91851 -10.69021 -10.23751 -8.69887 -8.38302 -6.46208 0.77473 0.99319 1.20182 1.32417 1.33827 1.52857 2.26339 2.91218 3.35627 3.81256 4.08518 4.11807 4.16912 4.24820 4.56565 4.69833 4.83611 5.03094 5.14900 5.43579 6.07518 6.57009 6.70055 7.22410 8.76706 Molecular weight = 186.05amu Principal moments of inertia in cm(-1) A = 0.057494 B = 0.017546 C = 0.015203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 486.892757 B = 1595.404086 C = 1841.321291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C 0.034 3.966 3 Si 0.922 3.078 4 H -0.274 1.274 5 H -0.290 1.290 6 H -0.232 1.232 7 C -0.520 4.520 8 H 0.044 0.956 9 C -0.036 4.036 10 H 0.076 0.924 11 C -0.044 4.044 12 S -0.271 6.271 13 C -0.063 4.063 14 C -0.170 4.170 15 C 0.318 3.682 16 O -0.468 6.468 17 H 0.266 0.734 18 H 0.112 0.888 19 H 0.072 0.928 20 H 0.088 0.912 21 H 0.151 0.849 22 H 0.107 0.893 23 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.876 -1.163 -1.137 14.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.165 4.165 3 Si 0.747 3.253 4 H -0.200 1.200 5 H -0.218 1.218 6 H -0.155 1.155 7 C -0.558 4.558 8 H 0.062 0.938 9 C -0.057 4.057 10 H 0.094 0.906 11 C -0.193 4.193 12 S -0.043 6.043 13 C -0.211 4.211 14 C -0.209 4.209 15 C 0.195 3.805 16 O -0.343 6.343 17 H 0.075 0.925 18 H 0.130 0.870 19 H 0.091 0.909 20 H 0.107 0.893 21 H 0.168 0.832 22 H 0.126 0.874 23 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 15.078 -1.357 -0.860 15.163 hybrid contribution -1.416 1.242 -0.828 2.057 sum 13.662 -0.115 -1.688 13.767 Atomic orbital electron populations 1.70002 1.08160 1.28046 1.51854 1.25733 0.95327 1.02677 0.92807 0.86187 0.80633 0.80025 0.78422 1.20047 1.21772 1.15504 1.20924 0.89902 0.93531 1.51475 0.93779 1.20000 0.95802 0.94626 0.95274 0.90588 1.23190 0.91929 0.97973 1.06165 1.86460 1.08336 1.72012 1.37530 1.23366 1.06315 0.94432 0.96947 1.22511 0.92371 0.99616 1.06439 1.26025 0.91994 0.75309 0.87173 1.90289 1.60655 1.39529 1.43833 0.92483 0.86981 0.90883 0.89315 0.83153 0.87441 0.86245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.55 13.96 21.45 0.30 -60.25 14 2 C 0.03 2.02 5.11 84.65 0.43 2.45 14 3 Si 0.92 46.00 24.29 68.60 1.67 47.67 14 4 H -0.27 -14.13 6.56 99.48 0.65 -13.48 14 5 H -0.29 -14.24 7.11 99.48 0.71 -13.54 14 6 H -0.23 -10.05 6.52 99.48 0.65 -9.40 14 7 C -0.52 -29.72 8.73 25.60 0.22 -29.50 14 8 H 0.04 2.75 7.99 -2.91 -0.02 2.73 14 9 C -0.04 -1.60 1.87 -12.24 -0.02 -1.62 14 10 H 0.08 3.28 7.20 -2.39 -0.02 3.26 14 11 C -0.04 -1.63 5.70 72.04 0.41 -1.22 14 12 S -0.27 -7.79 22.23 -56.49 -1.26 -9.05 14 13 C -0.06 -1.46 6.48 72.04 0.47 -1.00 14 14 C -0.17 -4.84 6.00 29.89 0.18 -4.66 14 15 C 0.32 13.37 4.34 29.07 0.13 13.49 14 16 O -0.47 -23.82 13.52 -1.48 -0.02 -23.84 14 17 H 0.27 16.13 8.31 -92.70 -0.77 15.36 14 18 H 0.11 3.99 8.14 -2.38 -0.02 3.97 14 19 H 0.07 2.76 8.14 -2.39 -0.02 2.74 14 20 H 0.09 2.07 8.14 -2.39 -0.02 2.05 14 21 H 0.15 2.36 8.14 -2.39 -0.02 2.34 14 22 H 0.11 2.71 8.12 -2.39 -0.02 2.69 14 23 H 0.12 2.98 8.14 -2.39 -0.02 2.96 14 Total: -1.00 -69.43 204.74 3.59 -65.84 By element: Atomic # 1 Polarization: 0.59 SS G_CDS: 1.08 Total: 1.67 kcal Atomic # 6 Polarization: -23.86 SS G_CDS: 1.82 Total: -22.04 kcal Atomic # 7 Polarization: -60.55 SS G_CDS: 0.30 Total: -60.25 kcal Atomic # 8 Polarization: -23.82 SS G_CDS: -0.02 Total: -23.84 kcal Atomic # 14 Polarization: 46.00 SS G_CDS: 1.67 Total: 47.67 kcal Atomic # 16 Polarization: -7.79 SS G_CDS: -1.26 Total: -9.05 kcal Total: -69.43 3.59 -65.84 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084233584.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.349 kcal (2) G-P(sol) polarization free energy of solvation -69.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds