Wall clock time and date at job start Mon Mar 30 2020 01:47:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00067 * 2 1 4 4 H 1.48505 * 109.47161 * 240.00254 * 3 2 1 5 5 H 1.48501 * 109.47074 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47020 * 120.00790 * 3 2 1 7 7 C 1.37882 * 119.99830 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99773 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00069 * 359.97438 * 7 2 1 10 10 H 1.08999 * 109.48123 * 299.99237 * 9 7 2 11 11 C 1.53208 * 109.49151 * 179.97438 * 9 7 2 12 12 S 1.81628 * 109.02839 * 182.21065 * 11 9 7 13 13 C 1.81629 * 102.55908 * 56.50324 * 12 11 9 14 14 C 1.53160 * 109.03618 * 303.50534 * 13 12 11 15 15 C 1.50654 * 109.47386 * 60.00676 * 9 7 2 16 16 O 1.20756 * 119.84178 * 2.49323 * 15 9 7 17 17 H 0.97001 * 120.00361 * 359.97438 * 1 2 3 18 18 H 1.08996 * 109.53716 * 62.35644 * 11 9 7 19 19 H 1.08996 * 109.55293 * 302.07605 * 11 9 7 20 20 H 1.09002 * 109.54064 * 63.37563 * 13 12 11 21 21 H 1.09003 * 109.54099 * 183.63886 * 13 12 11 22 22 H 1.09002 * 109.47738 * 177.78088 * 14 13 12 23 23 H 1.09004 * 109.47824 * 297.79705 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6964 -1.2126 5 1 1.2841 2.7464 0.0006 6 1 3.1030 1.6962 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 1 0.6247 -2.5574 0.8897 11 6 2.2461 -3.6641 -0.0018 12 16 1.3262 -5.2288 -0.0680 13 6 0.3252 -5.0351 -1.5712 14 6 -0.5201 -3.7638 -1.4481 15 6 0.3844 -2.5789 -1.2304 16 8 0.4152 -1.6887 -2.0457 17 1 -0.4851 0.8400 0.0004 18 1 2.8459 -3.6321 0.9077 19 1 2.8971 -3.5868 -0.8726 20 1 0.9810 -4.9544 -2.4381 21 1 -0.3297 -5.8987 -1.6869 22 1 -1.0946 -3.6193 -2.3631 23 1 -1.2014 -3.8608 -0.6027 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084233588.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:13 Heat of formation + Delta-G solvation = -65.984417 kcal Electronic energy + Delta-G solvation = -9753.704756 eV Core-core repulsion = 7885.088222 eV Total energy + Delta-G solvation = -1868.616534 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 186.046 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -40.18036 -35.50885 -34.40851 -32.56126 -27.30469 -26.16688 -23.68832 -20.43554 -18.64331 -17.17208 -16.76582 -16.37638 -16.06717 -15.04145 -14.89743 -14.70417 -14.09637 -13.33933 -13.11724 -12.93869 -12.69593 -12.62947 -12.35256 -11.92070 -11.48141 -10.65611 -10.56232 -9.90356 -8.65484 -8.20970 -6.31377 0.85696 1.37536 1.41442 1.46999 1.56228 1.59935 2.41040 3.10717 3.60460 3.91886 4.18530 4.26975 4.31592 4.41275 4.67559 4.77129 4.94902 5.28979 5.43127 5.67741 6.06866 6.71118 7.21150 7.39741 8.88744 Molecular weight = 186.05amu Principal moments of inertia in cm(-1) A = 0.067549 B = 0.014347 C = 0.012724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 414.412454 B = 1951.180207 C = 2200.005487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.027 3.973 3 Si 0.958 3.042 4 H -0.277 1.277 5 H -0.286 1.286 6 H -0.261 1.261 7 C -0.540 4.540 8 H 0.062 0.938 9 C -0.003 4.003 10 H 0.046 0.954 11 C -0.048 4.048 12 S -0.284 6.284 13 C -0.058 4.058 14 C -0.167 4.167 15 C 0.348 3.652 16 O -0.476 6.476 17 H 0.260 0.740 18 H 0.109 0.891 19 H 0.074 0.926 20 H 0.087 0.913 21 H 0.143 0.857 22 H 0.093 0.907 23 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.731 -8.591 -1.151 8.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.174 4.174 3 Si 0.783 3.217 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.186 1.186 7 C -0.579 4.579 8 H 0.080 0.920 9 C -0.023 4.023 10 H 0.064 0.936 11 C -0.196 4.196 12 S -0.056 6.056 13 C -0.206 4.206 14 C -0.207 4.207 15 C 0.223 3.777 16 O -0.349 6.349 17 H 0.069 0.931 18 H 0.127 0.873 19 H 0.093 0.907 20 H 0.106 0.894 21 H 0.161 0.839 22 H 0.112 0.888 23 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 0.646 -8.914 -0.881 8.981 hybrid contribution 0.123 2.144 -0.716 2.264 sum 0.770 -6.770 -1.596 6.998 Atomic orbital electron populations 1.69969 1.07515 1.27585 1.49795 1.25681 0.95587 1.02700 0.93448 0.85620 0.78410 0.78796 0.78879 1.20250 1.21165 1.18564 1.21154 0.93209 0.90789 1.52756 0.91994 1.19473 0.94242 0.94036 0.94597 0.93580 1.23351 0.98952 0.91567 1.05743 1.86339 1.54648 1.26561 1.38061 1.23308 1.00130 1.00389 0.96773 1.22426 0.99138 0.94145 1.04949 1.25442 0.80832 0.84843 0.86629 1.90195 1.61177 1.38899 1.44639 0.93089 0.87265 0.90703 0.89399 0.83861 0.88820 0.87936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.45 11.73 21.45 0.25 -54.20 14 2 C 0.03 1.54 4.73 84.66 0.40 1.94 14 3 Si 0.96 45.11 29.54 68.60 2.03 47.13 14 4 H -0.28 -12.99 7.11 99.48 0.71 -12.28 14 5 H -0.29 -13.31 7.11 99.48 0.71 -12.60 14 6 H -0.26 -11.53 7.11 99.48 0.71 -10.82 14 7 C -0.54 -29.85 8.15 25.60 0.21 -29.64 14 8 H 0.06 3.30 7.74 -2.91 -0.02 3.28 14 9 C 0.00 -0.14 2.27 -12.23 -0.03 -0.17 14 10 H 0.05 2.42 8.14 -2.39 -0.02 2.40 14 11 C -0.05 -1.87 5.71 72.05 0.41 -1.46 14 12 S -0.28 -9.19 22.23 -56.49 -1.26 -10.45 14 13 C -0.06 -1.63 6.48 72.04 0.47 -1.16 14 14 C -0.17 -5.86 6.00 29.89 0.18 -5.68 14 15 C 0.35 16.70 5.56 29.07 0.16 16.86 14 16 O -0.48 -26.98 15.24 -1.44 -0.02 -27.00 14 17 H 0.26 15.02 8.31 -92.71 -0.77 14.25 14 18 H 0.11 4.02 8.14 -2.39 -0.02 4.00 14 19 H 0.07 2.88 8.14 -2.39 -0.02 2.86 14 20 H 0.09 2.39 8.14 -2.39 -0.02 2.37 14 21 H 0.14 2.95 8.14 -2.39 -0.02 2.94 14 22 H 0.09 3.05 8.12 -2.39 -0.02 3.03 14 23 H 0.10 3.46 8.14 -2.38 -0.02 3.44 14 Total: -1.00 -64.95 211.98 3.99 -60.96 By element: Atomic # 1 Polarization: 1.67 SS G_CDS: 1.19 Total: 2.87 kcal Atomic # 6 Polarization: -21.10 SS G_CDS: 1.80 Total: -19.30 kcal Atomic # 7 Polarization: -54.45 SS G_CDS: 0.25 Total: -54.20 kcal Atomic # 8 Polarization: -26.98 SS G_CDS: -0.02 Total: -27.00 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.13 kcal Atomic # 16 Polarization: -9.19 SS G_CDS: -1.26 Total: -10.45 kcal Total: -64.95 3.99 -60.96 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084233588.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.028 kcal (2) G-P(sol) polarization free energy of solvation -64.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds