Wall clock time and date at job start Mon Mar 30 2020 02:03:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48501 * 109.46758 * 90.00167 * 3 2 1 5 5 H 1.48499 * 109.47026 * 210.00015 * 3 2 1 6 6 H 1.48496 * 109.47474 * 330.00050 * 3 2 1 7 7 C 1.37871 * 119.99826 * 180.27590 * 2 1 3 8 8 H 1.07998 * 120.00063 * 179.72354 * 7 2 1 9 9 C 1.50706 * 120.00434 * 359.72891 * 7 2 1 10 10 H 1.09004 * 109.46434 * 299.99667 * 9 7 2 11 11 O 1.42893 * 109.47067 * 59.99271 * 9 7 2 12 12 C 1.53002 * 109.47153 * 180.02562 * 9 7 2 13 13 C 1.53183 * 109.54131 * 299.81648 * 12 9 7 14 14 C 1.53098 * 109.15407 * 183.24203 * 13 12 9 15 15 O 1.42905 * 109.48504 * 57.47817 * 14 13 12 16 16 C 1.42898 * 114.09835 * 298.88493 * 15 14 13 17 17 C 1.53088 * 109.41522 * 61.16013 * 16 15 14 18 18 H 0.97000 * 120.00236 * 180.02562 * 1 2 3 19 19 H 0.96706 * 114.00131 * 60.01141 * 11 9 7 20 20 H 1.08999 * 109.54175 * 59.99705 * 12 9 7 21 21 H 1.09002 * 109.52127 * 303.06307 * 13 12 9 22 22 H 1.08998 * 109.51886 * 63.24923 * 13 12 9 23 23 H 1.08994 * 109.40923 * 297.49578 * 14 13 12 24 24 H 1.09004 * 109.47960 * 177.50234 * 14 13 12 25 25 H 1.09007 * 109.48019 * 301.17597 * 16 15 14 26 26 H 1.09005 * 109.48171 * 181.14500 * 16 15 14 27 27 H 1.09007 * 109.52418 * 182.48600 * 17 16 15 28 28 H 1.08994 * 109.57357 * 62.32924 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5466 1.4403 -0.7000 6 1 1.4466 2.6527 -0.7000 7 6 2.0045 -1.1940 -0.0057 8 1 3.0845 -1.1940 -0.0103 9 6 1.2510 -2.4992 -0.0059 10 1 0.6281 -2.5591 0.8866 11 8 0.4246 -2.5720 -1.1693 12 6 2.2453 -3.6621 -0.0121 13 6 3.1192 -3.5822 -1.2677 14 6 4.0550 -4.7933 -1.3062 15 8 3.2815 -5.9946 -1.2771 16 6 2.4816 -6.1451 -0.1025 17 6 1.4811 -4.9896 -0.0167 18 1 -0.4850 -0.8400 0.0004 19 1 0.9133 -2.5247 -2.0025 20 1 2.8760 -3.6074 0.8752 21 1 2.4846 -3.5854 -2.1540 22 1 3.7084 -2.6655 -1.2437 23 1 4.7177 -4.7666 -0.4413 24 1 4.6484 -4.7652 -2.2202 25 1 3.1238 -6.1361 0.7782 26 1 1.9416 -7.0908 -0.1492 27 1 0.8998 -5.0784 0.9012 28 1 0.8117 -5.0216 -0.8762 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085878869.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:45 Heat of formation + Delta-G solvation = -144.311959 kcal Electronic energy + Delta-G solvation = -12044.688213 eV Core-core repulsion = 9865.755365 eV Total energy + Delta-G solvation = -2178.932848 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -40.53002 -38.04717 -34.35766 -34.06543 -32.02549 -28.93552 -25.97361 -24.44200 -23.30264 -20.76571 -19.29453 -17.61427 -16.95435 -16.53275 -15.97833 -15.63595 -15.51617 -15.25109 -14.55172 -14.15430 -13.46934 -13.06053 -12.65501 -12.42607 -12.25581 -12.09317 -11.93658 -11.65710 -11.43625 -11.01142 -10.61899 -10.52010 -9.90145 -8.59073 -6.43117 1.52459 1.60742 1.78020 2.56536 2.96962 3.18301 3.82046 3.88885 4.03713 4.08526 4.13038 4.32802 4.48228 4.63710 4.75633 4.79951 4.90704 5.02193 5.12711 5.26478 5.35442 5.58877 5.90980 6.16801 6.25264 6.58322 7.15231 7.52617 8.77987 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.064454 B = 0.011825 C = 0.010716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 434.312686 B = 2367.227901 C = 2612.258250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C -0.023 4.023 3 Si 1.117 2.883 4 H -0.275 1.275 5 H -0.267 1.267 6 H -0.288 1.288 7 C -0.647 4.647 8 H 0.056 0.944 9 C 0.213 3.787 10 H 0.013 0.987 11 O -0.591 6.591 12 C -0.101 4.101 13 C -0.136 4.136 14 C 0.065 3.935 15 O -0.400 6.400 16 C 0.066 3.934 17 C -0.144 4.144 18 H 0.266 0.734 19 H 0.360 0.640 20 H 0.060 0.940 21 H 0.057 0.943 22 H 0.070 0.930 23 H 0.056 0.944 24 H 0.110 0.890 25 H 0.058 0.942 26 H 0.110 0.890 27 H 0.065 0.935 28 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.881 -8.317 -1.072 11.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.224 4.224 3 Si 0.939 3.061 4 H -0.201 1.201 5 H -0.192 1.192 6 H -0.213 1.213 7 C -0.685 4.685 8 H 0.074 0.926 9 C 0.156 3.844 10 H 0.030 0.970 11 O -0.397 6.397 12 C -0.120 4.120 13 C -0.173 4.173 14 C -0.012 4.012 15 O -0.319 6.319 16 C -0.011 4.011 17 C -0.182 4.182 18 H 0.076 0.924 19 H 0.207 0.793 20 H 0.078 0.922 21 H 0.075 0.925 22 H 0.088 0.912 23 H 0.075 0.925 24 H 0.128 0.872 25 H 0.076 0.924 26 H 0.128 0.872 27 H 0.083 0.917 28 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 7.221 -6.900 -0.759 10.016 hybrid contribution 0.136 -1.199 0.039 1.208 sum 7.357 -8.099 -0.720 10.966 Atomic orbital electron populations 1.70755 1.08156 1.31110 1.46253 1.27305 0.96520 1.06616 0.91978 0.82953 0.74272 0.71319 0.77577 1.20087 1.19177 1.21344 1.22853 0.94742 0.93488 1.57371 0.92610 1.19437 0.88184 0.92776 0.83957 0.96951 1.86410 1.39990 1.96612 1.16736 1.21612 0.97214 0.94907 0.98283 1.22050 0.98671 0.99151 0.97476 1.22681 0.92405 0.83080 1.02990 1.87844 1.60290 1.41092 1.42676 1.22658 0.92302 0.98315 0.87793 1.22151 0.98822 0.95102 1.02116 0.92365 0.79305 0.92169 0.92451 0.91189 0.92537 0.87225 0.92353 0.87210 0.91658 0.92315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.85 13.53 21.45 0.29 -57.56 15 2 C -0.02 -1.31 5.40 84.65 0.46 -0.85 15 3 Si 1.12 49.70 29.90 68.60 2.05 51.76 15 4 H -0.28 -11.60 7.11 99.48 0.71 -10.89 15 5 H -0.27 -10.83 7.11 99.48 0.71 -10.12 15 6 H -0.29 -12.88 7.11 99.48 0.71 -12.18 15 7 C -0.65 -35.42 8.07 25.60 0.21 -35.21 15 8 H 0.06 2.95 6.73 -2.91 -0.02 2.93 15 9 C 0.21 10.83 2.24 29.85 0.07 10.90 15 10 H 0.01 0.72 8.01 -2.39 -0.02 0.70 15 11 O -0.59 -30.40 11.24 -148.98 -1.67 -32.08 15 12 C -0.10 -4.04 2.12 -10.67 -0.02 -4.06 15 13 C -0.14 -4.81 4.88 30.69 0.15 -4.66 15 14 C 0.06 1.85 6.84 72.01 0.49 2.34 15 15 O -0.40 -12.27 10.77 -148.98 -1.60 -13.87 15 16 C 0.07 1.83 6.84 72.01 0.49 2.32 15 17 C -0.14 -4.98 5.32 30.68 0.16 -4.82 15 18 H 0.27 17.18 6.47 -92.71 -0.60 16.59 15 19 H 0.36 16.84 7.27 -74.05 -0.54 16.30 15 20 H 0.06 2.40 8.14 -2.39 -0.02 2.38 15 21 H 0.06 2.09 6.64 -2.39 -0.02 2.08 15 22 H 0.07 2.62 6.75 -2.39 -0.02 2.61 15 23 H 0.06 1.49 8.14 -2.39 -0.02 1.47 15 24 H 0.11 2.62 8.14 -2.39 -0.02 2.61 15 25 H 0.06 1.47 8.14 -2.38 -0.02 1.45 15 26 H 0.11 2.53 8.14 -2.38 -0.02 2.51 15 27 H 0.06 2.20 8.14 -2.38 -0.02 2.18 15 28 H 0.06 2.20 7.60 -2.39 -0.02 2.18 15 Total: -1.00 -64.85 226.79 1.85 -63.01 By element: Atomic # 1 Polarization: 22.01 SS G_CDS: 0.78 Total: 22.78 kcal Atomic # 6 Polarization: -36.05 SS G_CDS: 2.01 Total: -34.04 kcal Atomic # 7 Polarization: -57.85 SS G_CDS: 0.29 Total: -57.56 kcal Atomic # 8 Polarization: -42.67 SS G_CDS: -3.28 Total: -45.95 kcal Atomic # 14 Polarization: 49.70 SS G_CDS: 2.05 Total: 51.76 kcal Total: -64.85 1.85 -63.01 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085878869.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.307 kcal (2) G-P(sol) polarization free energy of solvation -64.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds