Wall clock time and date at job start Mon Mar 30 2020 02:03:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86803 * 120.00376 * 2 1 4 4 H 1.48491 * 109.47312 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.46948 * 300.00094 * 3 2 1 6 6 H 1.48500 * 109.46809 * 60.00013 * 3 2 1 7 7 C 1.37877 * 119.99723 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99852 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00129 * 359.97438 * 7 2 1 10 10 H 1.09002 * 109.46959 * 60.00169 * 9 7 2 11 11 O 1.42898 * 109.46964 * 300.00198 * 9 7 2 12 12 C 1.52997 * 109.47078 * 180.02562 * 9 7 2 13 13 C 1.53176 * 109.54575 * 299.82339 * 12 9 7 14 14 C 1.53107 * 109.16033 * 183.24183 * 13 12 9 15 15 O 1.42905 * 109.48635 * 57.47257 * 14 13 12 16 16 C 1.42909 * 114.09708 * 298.89171 * 15 14 13 17 17 C 1.53090 * 109.41349 * 61.15697 * 16 15 14 18 18 H 0.97003 * 119.99231 * 359.97438 * 1 2 3 19 19 H 0.96698 * 113.99898 * 299.99550 * 11 9 7 20 20 H 1.09003 * 109.54454 * 60.00315 * 12 9 7 21 21 H 1.08996 * 109.52436 * 303.05748 * 13 12 9 22 22 H 1.09004 * 109.52332 * 63.24916 * 13 12 9 23 23 H 1.09001 * 109.40193 * 297.49701 * 14 13 12 24 24 H 1.08990 * 109.48391 * 177.50140 * 14 13 12 25 25 H 1.08998 * 109.47898 * 301.17199 * 16 15 14 26 26 H 1.08999 * 109.47695 * 181.13799 * 16 15 14 27 27 H 1.09003 * 109.51999 * 182.48119 * 17 16 15 28 28 H 1.08999 * 109.52123 * 62.29880 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8906 2.3964 -1.2125 6 1 1.8906 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 1 0.6240 -2.5567 -0.8903 11 8 0.4299 -2.5750 1.1665 12 6 2.2452 -3.6621 -0.0005 13 6 3.1239 -3.5851 -1.2529 14 6 4.0598 -4.7964 -1.2853 15 8 3.2861 -5.9975 -1.2563 16 6 2.4817 -6.1454 -0.0844 17 6 1.4810 -4.9896 -0.0050 18 1 -0.4849 0.8401 0.0004 19 1 0.9223 -2.5299 1.9975 20 1 2.8725 -3.6055 0.8891 21 1 2.4928 -3.5902 -2.1415 22 1 3.7131 -2.6684 -1.2286 23 1 4.7192 -4.7678 -0.4178 24 1 4.6566 -4.7703 -2.1968 25 1 3.1206 -6.1345 0.7987 26 1 1.9419 -7.0911 -0.1311 27 1 0.8963 -5.0764 0.9108 28 1 0.8156 -5.0240 -0.8677 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085878874.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:46 Heat of formation + Delta-G solvation = -116.842493 kcal Electronic energy + Delta-G solvation = -11934.120666 eV Core-core repulsion = 9756.378983 eV Total energy + Delta-G solvation = -2177.741683 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -38.90618 -35.90970 -32.54934 -32.14028 -30.57591 -27.15417 -24.40023 -22.87895 -21.17069 -19.35428 -16.92053 -15.73442 -15.53226 -14.60562 -14.55500 -14.34265 -13.54829 -13.23938 -12.59178 -12.16895 -11.85240 -11.37736 -10.95581 -10.85066 -10.77891 -10.53580 -10.18062 -9.88127 -9.72638 -9.34274 -8.79177 -8.56199 -7.99758 -5.99618 -4.17056 3.26169 3.34669 3.37349 4.26277 4.38907 5.24723 5.34801 5.44296 5.54486 5.62939 5.68902 5.83647 6.03673 6.08824 6.36470 6.40215 6.53050 6.68907 6.87452 6.96968 6.98229 7.57802 7.76195 7.87985 8.21211 8.85744 9.39372 9.59871 11.04650 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.059798 B = 0.011881 C = 0.010382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 468.129327 B = 2356.204553 C = 2696.306119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.861 5.861 2 C 0.077 3.923 3 Si 0.886 3.114 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.567 4.567 8 H 0.057 0.943 9 C 0.234 3.766 10 H 0.054 0.946 11 O -0.566 6.566 12 C -0.112 4.112 13 C -0.138 4.138 14 C 0.060 3.940 15 O -0.392 6.392 16 C 0.061 3.939 17 C -0.146 4.146 18 H 0.259 0.741 19 H 0.343 0.657 20 H 0.056 0.944 21 H 0.064 0.936 22 H 0.080 0.920 23 H 0.042 0.958 24 H 0.085 0.915 25 H 0.042 0.958 26 H 0.084 0.916 27 H 0.072 0.928 28 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.633 -7.312 0.043 9.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.497 5.497 2 C -0.129 4.129 3 Si 0.714 3.286 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.605 4.605 8 H 0.075 0.925 9 C 0.177 3.823 10 H 0.072 0.928 11 O -0.368 6.368 12 C -0.131 4.131 13 C -0.175 4.175 14 C -0.017 4.017 15 O -0.311 6.311 16 C -0.015 4.015 17 C -0.183 4.183 18 H 0.069 0.931 19 H 0.187 0.813 20 H 0.074 0.926 21 H 0.083 0.917 22 H 0.099 0.901 23 H 0.061 0.939 24 H 0.103 0.897 25 H 0.061 0.939 26 H 0.102 0.898 27 H 0.090 0.910 28 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 4.986 -7.387 -0.574 8.931 hybrid contribution 0.920 1.311 0.591 1.708 sum 5.907 -6.076 0.017 8.474 Atomic orbital electron populations 1.70095 1.05942 1.26216 1.47455 1.25073 0.94678 0.99125 0.94002 0.86654 0.80215 0.84063 0.77674 1.19748 1.20922 1.20940 1.21733 0.93149 0.91497 1.54109 0.92471 1.19395 0.87625 0.89485 0.85812 0.92809 1.86558 1.38488 1.96332 1.15457 1.21931 0.98102 0.96131 0.96965 1.22068 0.98631 0.97719 0.99106 1.22653 0.93110 0.85003 1.00938 1.87837 1.59980 1.41011 1.42311 1.22590 0.92710 0.98720 0.87504 1.22179 0.98276 0.95153 1.02736 0.93112 0.81327 0.92571 0.91697 0.90099 0.93946 0.89716 0.93933 0.89822 0.90957 0.91731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.58 12.84 55.43 0.71 -24.87 15 2 C 0.08 2.15 5.40 -17.82 -0.10 2.05 15 3 Si 0.89 21.10 29.54 -169.99 -5.02 16.07 15 4 H -0.27 -6.35 7.11 56.52 0.40 -5.95 15 5 H -0.28 -6.71 7.11 56.52 0.40 -6.31 15 6 H -0.28 -6.72 7.11 56.52 0.40 -6.32 15 7 C -0.57 -15.31 8.07 -34.44 -0.28 -15.59 15 8 H 0.06 1.50 6.73 -52.49 -0.35 1.15 15 9 C 0.23 5.88 2.42 -27.88 -0.07 5.82 15 10 H 0.05 1.52 8.14 -51.93 -0.42 1.09 15 11 O -0.57 -14.51 12.13 -35.23 -0.43 -14.93 15 12 C -0.11 -2.27 2.00 -90.44 -0.18 -2.45 15 13 C -0.14 -2.58 5.11 -26.59 -0.14 -2.71 15 14 C 0.06 0.95 6.84 37.21 0.25 1.20 15 15 O -0.39 -6.70 10.77 -35.23 -0.38 -7.08 15 16 C 0.06 0.95 6.84 37.20 0.25 1.21 15 17 C -0.15 -2.62 5.23 -26.59 -0.14 -2.76 15 18 H 0.26 7.28 8.31 -40.82 -0.34 6.94 15 19 H 0.34 7.77 9.04 45.56 0.41 8.19 15 20 H 0.06 1.12 8.14 -51.93 -0.42 0.70 15 21 H 0.06 1.27 8.14 -51.93 -0.42 0.84 15 22 H 0.08 1.57 6.75 -51.93 -0.35 1.22 15 23 H 0.04 0.63 8.14 -51.93 -0.42 0.21 15 24 H 0.08 1.18 8.14 -51.93 -0.42 0.76 15 25 H 0.04 0.61 8.14 -51.93 -0.42 0.19 15 26 H 0.08 1.12 8.14 -51.93 -0.42 0.70 15 27 H 0.07 1.28 7.80 -51.93 -0.40 0.87 15 28 H 0.06 1.22 8.14 -51.93 -0.42 0.80 15 LS Contribution 232.28 15.07 3.50 3.50 Total: -1.00 -30.24 232.28 -5.22 -35.46 By element: Atomic # 1 Polarization: 8.30 SS G_CDS: -3.21 Total: 5.08 kcal Atomic # 6 Polarization: -12.85 SS G_CDS: -0.39 Total: -13.24 kcal Atomic # 7 Polarization: -25.58 SS G_CDS: 0.71 Total: -24.87 kcal Atomic # 8 Polarization: -21.21 SS G_CDS: -0.81 Total: -22.01 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 3.50 Total: 3.50 kcal Total: -30.24 -5.22 -35.46 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085878874.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.380 kcal (2) G-P(sol) polarization free energy of solvation -30.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds