Wall clock time and date at job start Mon Mar 30 2020 02:03:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86803 * 120.00376 * 2 1 4 4 H 1.48491 * 109.47312 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.46948 * 300.00094 * 3 2 1 6 6 H 1.48500 * 109.46809 * 60.00013 * 3 2 1 7 7 C 1.37877 * 119.99723 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99852 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00129 * 359.97438 * 7 2 1 10 10 H 1.09002 * 109.46959 * 60.00169 * 9 7 2 11 11 O 1.42898 * 109.46964 * 300.00198 * 9 7 2 12 12 C 1.52997 * 109.47078 * 180.02562 * 9 7 2 13 13 C 1.53176 * 109.54575 * 299.82339 * 12 9 7 14 14 C 1.53107 * 109.16033 * 183.24183 * 13 12 9 15 15 O 1.42905 * 109.48635 * 57.47257 * 14 13 12 16 16 C 1.42909 * 114.09708 * 298.89171 * 15 14 13 17 17 C 1.53090 * 109.41349 * 61.15697 * 16 15 14 18 18 H 0.97003 * 119.99231 * 359.97438 * 1 2 3 19 19 H 0.96698 * 113.99898 * 299.99550 * 11 9 7 20 20 H 1.09003 * 109.54454 * 60.00315 * 12 9 7 21 21 H 1.08996 * 109.52436 * 303.05748 * 13 12 9 22 22 H 1.09004 * 109.52332 * 63.24916 * 13 12 9 23 23 H 1.09001 * 109.40193 * 297.49701 * 14 13 12 24 24 H 1.08990 * 109.48391 * 177.50140 * 14 13 12 25 25 H 1.08998 * 109.47898 * 301.17199 * 16 15 14 26 26 H 1.08999 * 109.47695 * 181.13799 * 16 15 14 27 27 H 1.09003 * 109.51999 * 182.48119 * 17 16 15 28 28 H 1.08999 * 109.52123 * 62.29880 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8906 2.3964 -1.2125 6 1 1.8906 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 1 0.6240 -2.5567 -0.8903 11 8 0.4299 -2.5750 1.1665 12 6 2.2452 -3.6621 -0.0005 13 6 3.1239 -3.5851 -1.2529 14 6 4.0598 -4.7964 -1.2853 15 8 3.2861 -5.9975 -1.2563 16 6 2.4817 -6.1454 -0.0844 17 6 1.4810 -4.9896 -0.0050 18 1 -0.4849 0.8401 0.0004 19 1 0.9223 -2.5299 1.9975 20 1 2.8725 -3.6055 0.8891 21 1 2.4928 -3.5902 -2.1415 22 1 3.7131 -2.6684 -1.2286 23 1 4.7192 -4.7678 -0.4178 24 1 4.6566 -4.7703 -2.1968 25 1 3.1206 -6.1345 0.7987 26 1 1.9419 -7.0911 -0.1311 27 1 0.8963 -5.0764 0.9108 28 1 0.8156 -5.0240 -0.8677 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085878874.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:46 Heat of formation + Delta-G solvation = -139.358768 kcal Electronic energy + Delta-G solvation = -11935.097045 eV Core-core repulsion = 9756.378983 eV Total energy + Delta-G solvation = -2178.718061 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -40.33568 -37.74094 -34.27363 -34.20482 -31.93607 -29.06603 -26.14986 -24.28330 -22.92219 -20.93438 -18.97727 -17.19313 -16.85015 -16.64611 -16.33713 -15.77800 -15.26016 -14.85730 -14.28692 -13.93429 -13.38454 -13.19741 -12.85172 -12.65583 -12.25649 -12.15192 -12.03211 -11.49035 -11.22079 -10.93329 -10.69337 -10.56816 -9.87813 -8.12275 -6.36778 1.38840 1.40433 1.52082 2.39029 3.03536 3.13286 3.93803 3.96013 4.15024 4.18374 4.34083 4.47028 4.60911 4.71017 4.83568 4.87466 5.02279 5.12846 5.25566 5.36638 5.41276 5.68194 5.84124 6.12278 6.31687 6.75373 7.34954 7.56337 8.92526 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.059798 B = 0.011881 C = 0.010382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 468.129327 B = 2356.204553 C = 2696.306119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.020 3.980 3 Si 0.958 3.042 4 H -0.260 1.260 5 H -0.282 1.282 6 H -0.281 1.281 7 C -0.573 4.573 8 H 0.064 0.936 9 C 0.233 3.767 10 H 0.011 0.989 11 O -0.582 6.582 12 C -0.105 4.105 13 C -0.136 4.136 14 C 0.065 3.935 15 O -0.403 6.403 16 C 0.065 3.935 17 C -0.142 4.142 18 H 0.259 0.741 19 H 0.356 0.644 20 H 0.064 0.936 21 H 0.047 0.953 22 H 0.072 0.928 23 H 0.060 0.940 24 H 0.107 0.893 25 H 0.061 0.939 26 H 0.108 0.892 27 H 0.073 0.927 28 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.450 -7.857 0.420 10.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.182 4.182 3 Si 0.783 3.217 4 H -0.184 1.184 5 H -0.208 1.208 6 H -0.207 1.207 7 C -0.611 4.611 8 H 0.083 0.917 9 C 0.175 3.825 10 H 0.029 0.971 11 O -0.386 6.386 12 C -0.124 4.124 13 C -0.174 4.174 14 C -0.011 4.011 15 O -0.322 6.322 16 C -0.011 4.011 17 C -0.179 4.179 18 H 0.068 0.932 19 H 0.201 0.799 20 H 0.083 0.917 21 H 0.065 0.935 22 H 0.091 0.909 23 H 0.078 0.922 24 H 0.125 0.875 25 H 0.079 0.921 26 H 0.126 0.874 27 H 0.092 0.908 28 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 6.825 -7.945 -0.193 10.476 hybrid contribution 0.312 1.460 0.481 1.569 sum 7.136 -6.485 0.287 9.647 Atomic orbital electron populations 1.70242 1.07773 1.27126 1.49175 1.25959 0.95455 1.03040 0.93717 0.85531 0.79305 0.79335 0.77536 1.18427 1.20785 1.20651 1.22108 0.93597 0.92410 1.53010 0.91747 1.19277 0.87613 0.91341 0.84225 0.97116 1.86491 1.39423 1.96476 1.16234 1.21744 0.97281 0.95242 0.98089 1.22033 0.98653 0.99200 0.97502 1.22686 0.92391 0.83057 1.02989 1.87838 1.60167 1.41102 1.43121 1.22678 0.92282 0.98341 0.87834 1.22125 0.98605 0.95206 1.02004 0.93175 0.79902 0.91735 0.93458 0.90948 0.92201 0.87453 0.92069 0.87373 0.90827 0.93563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.84 12.84 21.45 0.28 -54.57 15 2 C 0.02 1.11 5.40 84.65 0.46 1.57 15 3 Si 0.96 43.30 29.54 68.60 2.03 45.33 15 4 H -0.26 -11.13 7.11 99.48 0.71 -10.42 15 5 H -0.28 -12.60 7.11 99.48 0.71 -11.89 15 6 H -0.28 -12.49 7.11 99.48 0.71 -11.78 15 7 C -0.57 -31.04 8.07 25.60 0.21 -30.84 15 8 H 0.06 3.33 6.73 -2.91 -0.02 3.31 15 9 C 0.23 11.91 2.42 29.85 0.07 11.98 15 10 H 0.01 0.65 8.14 -2.39 -0.02 0.63 15 11 O -0.58 -30.29 12.13 -148.98 -1.81 -32.10 15 12 C -0.10 -4.16 2.00 -10.68 -0.02 -4.18 15 13 C -0.14 -4.97 5.11 30.69 0.16 -4.81 15 14 C 0.07 1.89 6.84 72.02 0.49 2.38 15 15 O -0.40 -12.58 10.77 -148.98 -1.60 -14.18 15 16 C 0.06 1.82 6.84 72.01 0.49 2.31 15 17 C -0.14 -4.95 5.23 30.68 0.16 -4.79 15 18 H 0.26 14.85 8.31 -92.71 -0.77 14.08 15 19 H 0.36 16.14 9.04 -74.06 -0.67 15.48 15 20 H 0.06 2.46 8.14 -2.39 -0.02 2.44 15 21 H 0.05 1.86 8.14 -2.39 -0.02 1.84 15 22 H 0.07 2.74 6.75 -2.39 -0.02 2.72 15 23 H 0.06 1.56 8.14 -2.39 -0.02 1.54 15 24 H 0.11 2.64 8.14 -2.39 -0.02 2.62 15 25 H 0.06 1.52 8.14 -2.39 -0.02 1.50 15 26 H 0.11 2.53 8.14 -2.39 -0.02 2.51 15 27 H 0.07 2.53 7.80 -2.39 -0.02 2.51 15 28 H 0.05 1.76 8.14 -2.39 -0.02 1.74 15 Total: -1.00 -64.47 232.28 1.38 -63.09 By element: Atomic # 1 Polarization: 18.34 SS G_CDS: 0.47 Total: 18.81 kcal Atomic # 6 Polarization: -28.39 SS G_CDS: 2.02 Total: -26.38 kcal Atomic # 7 Polarization: -54.84 SS G_CDS: 0.28 Total: -54.57 kcal Atomic # 8 Polarization: -42.87 SS G_CDS: -3.41 Total: -46.28 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 2.03 Total: 45.33 kcal Total: -64.47 1.38 -63.09 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085878874.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.271 kcal (2) G-P(sol) polarization free energy of solvation -64.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds