Wall clock time and date at job start Mon Mar 30 2020 02:02:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86802 * 120.00100 * 2 1 4 4 H 1.48504 * 109.46861 * 270.00322 * 3 2 1 5 5 H 1.48495 * 109.47194 * 30.00331 * 3 2 1 6 6 H 1.48492 * 109.46937 * 150.00589 * 3 2 1 7 7 C 1.37879 * 119.99683 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99467 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00144 * 359.97438 * 7 2 1 10 10 H 1.08996 * 109.46990 * 299.99629 * 9 7 2 11 11 O 1.42897 * 109.47239 * 59.99959 * 9 7 2 12 12 C 1.53005 * 109.46780 * 180.02562 * 9 7 2 13 13 H 1.08995 * 109.52406 * 59.87506 * 12 9 7 14 14 C 1.53176 * 109.51885 * 179.97438 * 12 9 7 15 15 C 1.53175 * 109.03666 * 176.94557 * 14 12 9 16 16 C 1.53094 * 109.16661 * 303.02385 * 15 14 12 17 17 O 1.42898 * 109.41211 * 57.60371 * 16 15 14 18 18 C 1.42897 * 114.10001 * 298.84343 * 17 16 15 19 19 H 0.97003 * 119.99678 * 359.97438 * 1 2 3 20 20 H 0.96706 * 114.00000 * 60.00077 * 11 9 7 21 21 H 1.08997 * 109.55040 * 296.81668 * 14 12 9 22 22 H 1.09004 * 109.54565 * 57.08316 * 14 12 9 23 23 H 1.09004 * 109.52259 * 62.92651 * 15 14 12 24 24 H 1.09006 * 109.52330 * 183.11484 * 15 14 12 25 25 H 1.09006 * 109.47665 * 297.62062 * 16 15 14 26 26 H 1.08993 * 109.47955 * 177.58818 * 16 15 14 27 27 H 1.09002 * 109.48425 * 301.17758 * 18 17 16 28 28 H 1.09001 * 109.49443 * 181.15303 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4468 2.6526 0.7001 6 1 3.5467 1.4401 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 1 0.6247 -2.5571 0.8897 11 8 0.4290 -2.5746 -1.1670 12 6 2.2453 -3.6621 -0.0005 13 1 2.8739 -3.6039 0.8880 14 6 1.4805 -4.9893 0.0001 15 6 2.4839 -6.1441 -0.0770 16 6 3.3511 -5.9738 -1.3271 17 8 4.0100 -4.7067 -1.2791 18 6 3.1216 -3.5877 -1.2536 19 1 -0.4850 0.8401 0.0004 20 1 0.9208 -2.5291 -1.9984 21 1 0.8973 -5.0737 0.9170 22 1 0.8145 -5.0268 -0.8620 23 1 3.1177 -6.1358 0.8098 24 1 1.9463 -7.0907 -0.1329 25 1 2.7215 -6.0228 -2.2157 26 1 4.0953 -6.7693 -1.3644 27 1 2.4891 -3.6054 -2.1411 28 1 3.7003 -2.6641 -1.2381 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085878878.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:52 Heat of formation + Delta-G solvation = -116.030523 kcal Electronic energy + Delta-G solvation = -12014.949956 eV Core-core repulsion = 9837.243483 eV Total energy + Delta-G solvation = -2177.706473 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -38.95574 -35.79495 -32.78736 -32.10497 -30.61355 -26.59994 -24.43552 -23.66748 -20.99719 -19.12282 -16.94023 -15.69555 -15.53568 -14.70132 -14.59662 -14.20528 -13.46422 -13.26430 -12.73409 -12.10653 -12.04848 -11.29059 -11.03272 -10.89110 -10.76122 -10.39644 -10.38275 -10.00514 -9.79655 -9.22312 -8.70723 -8.49896 -8.08382 -6.00871 -4.19092 3.27938 3.35242 3.38368 4.37201 4.40962 5.25331 5.26281 5.32420 5.41418 5.67773 5.71198 5.94034 6.05511 6.13643 6.20827 6.34876 6.48520 6.52053 6.78453 6.84796 7.08175 7.71071 7.72469 7.83878 8.17982 8.83615 9.36034 9.57879 11.03241 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.064491 B = 0.011862 C = 0.010762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 434.067446 B = 2359.966754 C = 2601.074634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.860 5.860 2 C 0.078 3.922 3 Si 0.888 3.112 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.572 4.572 8 H 0.058 0.942 9 C 0.235 3.765 10 H 0.057 0.943 11 O -0.565 6.565 12 C -0.145 4.145 13 H 0.069 0.931 14 C -0.114 4.114 15 C -0.155 4.155 16 C 0.062 3.938 17 O -0.393 6.393 18 C 0.071 3.929 19 H 0.260 0.740 20 H 0.342 0.658 21 H 0.058 0.942 22 H 0.065 0.935 23 H 0.064 0.936 24 H 0.062 0.938 25 H 0.044 0.956 26 H 0.082 0.918 27 H 0.044 0.956 28 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.267 -8.234 -1.801 9.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.496 5.496 2 C -0.128 4.128 3 Si 0.715 3.285 4 H -0.205 1.205 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.610 4.610 8 H 0.076 0.924 9 C 0.178 3.822 10 H 0.075 0.925 11 O -0.368 6.368 12 C -0.164 4.164 13 H 0.088 0.912 14 C -0.152 4.152 15 C -0.193 4.193 16 C -0.015 4.015 17 O -0.312 6.312 18 C -0.005 4.005 19 H 0.070 0.930 20 H 0.186 0.814 21 H 0.077 0.923 22 H 0.084 0.916 23 H 0.083 0.917 24 H 0.081 0.919 25 H 0.062 0.938 26 H 0.100 0.900 27 H 0.062 0.938 28 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 3.812 -8.150 -1.327 9.095 hybrid contribution 0.589 0.982 -0.261 1.175 sum 4.401 -7.168 -1.588 8.560 Atomic orbital electron populations 1.70081 1.05968 1.26420 1.47147 1.25066 0.94684 0.99171 0.93834 0.86688 0.80027 0.83560 0.78229 1.20514 1.21159 1.19776 1.21714 0.93214 0.91487 1.54587 0.92353 1.19329 0.87571 0.89341 0.85987 0.92549 1.86568 1.38525 1.96286 1.15399 1.22477 0.98761 0.96676 0.98516 0.91232 1.21593 0.97294 0.94055 1.02225 1.22212 0.98826 0.99099 0.99177 1.22459 0.95949 0.86489 0.96591 1.87873 1.34270 1.14166 1.94921 1.22675 0.92661 0.88267 0.96857 0.93008 0.81373 0.92302 0.91585 0.91699 0.91905 0.93764 0.90007 0.93778 0.88024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.39 12.84 55.43 0.71 -24.68 15 2 C 0.08 2.18 5.40 -17.82 -0.10 2.09 15 3 Si 0.89 21.10 29.54 -169.99 -5.02 16.08 15 4 H -0.28 -6.56 7.11 56.52 0.40 -6.16 15 5 H -0.29 -6.77 7.11 56.52 0.40 -6.37 15 6 H -0.27 -6.40 7.11 56.52 0.40 -5.99 15 7 C -0.57 -15.45 8.07 -34.44 -0.28 -15.72 15 8 H 0.06 1.54 6.74 -52.48 -0.35 1.18 15 9 C 0.24 5.88 2.64 -27.88 -0.07 5.81 15 10 H 0.06 1.57 8.14 -51.93 -0.42 1.14 15 11 O -0.56 -14.30 11.97 -35.23 -0.42 -14.72 15 12 C -0.15 -2.99 2.23 -90.48 -0.20 -3.19 15 13 H 0.07 1.48 8.14 -51.93 -0.42 1.06 15 14 C -0.11 -2.04 5.20 -26.55 -0.14 -2.18 15 15 C -0.16 -2.30 6.14 -26.59 -0.16 -2.47 15 16 C 0.06 0.93 6.84 37.21 0.25 1.18 15 17 O -0.39 -7.20 10.76 -35.23 -0.38 -7.58 15 18 C 0.07 1.38 5.58 37.20 0.21 1.58 15 19 H 0.26 7.28 8.31 -40.82 -0.34 6.94 15 20 H 0.34 7.75 7.28 45.56 0.33 8.08 15 21 H 0.06 1.04 8.14 -51.93 -0.42 0.62 15 22 H 0.07 1.21 7.61 -51.93 -0.40 0.82 15 23 H 0.06 0.96 8.14 -51.93 -0.42 0.54 15 24 H 0.06 0.79 8.14 -51.93 -0.42 0.37 15 25 H 0.04 0.63 8.14 -51.93 -0.42 0.20 15 26 H 0.08 1.02 8.14 -51.93 -0.42 0.60 15 27 H 0.04 0.82 6.67 -51.93 -0.35 0.47 15 28 H 0.10 2.07 6.73 -51.93 -0.35 1.72 15 LS Contribution 228.86 15.07 3.45 3.45 Total: -1.00 -29.77 228.86 -5.36 -35.13 By element: Atomic # 1 Polarization: 8.43 SS G_CDS: -3.21 Total: 5.22 kcal Atomic # 6 Polarization: -12.41 SS G_CDS: -0.49 Total: -12.90 kcal Atomic # 7 Polarization: -25.39 SS G_CDS: 0.71 Total: -24.68 kcal Atomic # 8 Polarization: -21.50 SS G_CDS: -0.80 Total: -22.30 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 3.45 Total: 3.45 kcal Total: -29.77 -5.36 -35.13 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085878878.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.905 kcal (2) G-P(sol) polarization free energy of solvation -29.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds