Wall clock time and date at job start Mon Mar 30 2020 02:02:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86802 * 120.00100 * 2 1 4 4 H 1.48504 * 109.46861 * 270.00322 * 3 2 1 5 5 H 1.48495 * 109.47194 * 30.00331 * 3 2 1 6 6 H 1.48492 * 109.46937 * 150.00589 * 3 2 1 7 7 C 1.37879 * 119.99683 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99467 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00144 * 359.97438 * 7 2 1 10 10 H 1.08996 * 109.46990 * 299.99629 * 9 7 2 11 11 O 1.42897 * 109.47239 * 59.99959 * 9 7 2 12 12 C 1.53005 * 109.46780 * 180.02562 * 9 7 2 13 13 H 1.08995 * 109.52406 * 59.87506 * 12 9 7 14 14 C 1.53176 * 109.51885 * 179.97438 * 12 9 7 15 15 C 1.53175 * 109.03666 * 176.94557 * 14 12 9 16 16 C 1.53094 * 109.16661 * 303.02385 * 15 14 12 17 17 O 1.42898 * 109.41211 * 57.60371 * 16 15 14 18 18 C 1.42897 * 114.10001 * 298.84343 * 17 16 15 19 19 H 0.97003 * 119.99678 * 359.97438 * 1 2 3 20 20 H 0.96706 * 114.00000 * 60.00077 * 11 9 7 21 21 H 1.08997 * 109.55040 * 296.81668 * 14 12 9 22 22 H 1.09004 * 109.54565 * 57.08316 * 14 12 9 23 23 H 1.09004 * 109.52259 * 62.92651 * 15 14 12 24 24 H 1.09006 * 109.52330 * 183.11484 * 15 14 12 25 25 H 1.09006 * 109.47665 * 297.62062 * 16 15 14 26 26 H 1.08993 * 109.47955 * 177.58818 * 16 15 14 27 27 H 1.09002 * 109.48425 * 301.17758 * 18 17 16 28 28 H 1.09001 * 109.49443 * 181.15303 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4468 2.6526 0.7001 6 1 3.5467 1.4401 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 1 0.6247 -2.5571 0.8897 11 8 0.4290 -2.5746 -1.1670 12 6 2.2453 -3.6621 -0.0005 13 1 2.8739 -3.6039 0.8880 14 6 1.4805 -4.9893 0.0001 15 6 2.4839 -6.1441 -0.0770 16 6 3.3511 -5.9738 -1.3271 17 8 4.0100 -4.7067 -1.2791 18 6 3.1216 -3.5877 -1.2536 19 1 -0.4850 0.8401 0.0004 20 1 0.9208 -2.5291 -1.9984 21 1 0.8973 -5.0737 0.9170 22 1 0.8145 -5.0268 -0.8620 23 1 3.1177 -6.1358 0.8098 24 1 1.9463 -7.0907 -0.1329 25 1 2.7215 -6.0228 -2.2157 26 1 4.0953 -6.7693 -1.3644 27 1 2.4891 -3.6054 -2.1411 28 1 3.7003 -2.6641 -1.2381 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085878878.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:52 Heat of formation + Delta-G solvation = -137.802551 kcal Electronic energy + Delta-G solvation = -12015.894062 eV Core-core repulsion = 9837.243483 eV Total energy + Delta-G solvation = -2178.650579 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -40.45146 -37.62718 -34.38559 -34.12195 -32.17355 -28.52577 -25.91536 -25.38505 -22.58765 -20.70135 -18.98585 -17.17654 -17.05292 -16.69280 -16.27931 -15.73017 -15.14989 -14.80306 -14.51294 -13.82376 -13.43905 -13.21421 -12.84423 -12.71939 -12.30493 -12.06539 -11.91616 -11.67334 -11.36299 -10.94627 -10.71459 -10.24190 -10.01748 -8.13028 -6.38118 1.40769 1.41610 1.52282 2.39534 3.03168 3.14583 3.98480 4.00224 4.04212 4.15803 4.28113 4.40242 4.63115 4.66750 4.89394 4.89628 5.03062 5.10329 5.17362 5.32545 5.47987 5.66880 5.74527 6.09841 6.34000 6.73306 7.33480 7.52680 8.91357 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.064491 B = 0.011862 C = 0.010762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 434.067446 B = 2359.966754 C = 2601.074634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.025 3.975 3 Si 0.957 3.043 4 H -0.271 1.271 5 H -0.285 1.285 6 H -0.266 1.266 7 C -0.581 4.581 8 H 0.062 0.938 9 C 0.236 3.764 10 H 0.019 0.981 11 O -0.577 6.577 12 C -0.136 4.136 13 H 0.059 0.941 14 C -0.112 4.112 15 C -0.147 4.147 16 C 0.053 3.947 17 O -0.404 6.404 18 C 0.081 3.919 19 H 0.261 0.739 20 H 0.354 0.646 21 H 0.053 0.947 22 H 0.061 0.939 23 H 0.065 0.935 24 H 0.093 0.907 25 H 0.054 0.946 26 H 0.113 0.887 27 H 0.051 0.949 28 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.454 -9.046 -2.329 10.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.178 4.178 3 Si 0.782 3.218 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.190 1.190 7 C -0.619 4.619 8 H 0.080 0.920 9 C 0.178 3.822 10 H 0.036 0.964 11 O -0.382 6.382 12 C -0.156 4.156 13 H 0.077 0.923 14 C -0.150 4.150 15 C -0.185 4.185 16 C -0.023 4.023 17 O -0.324 6.324 18 C 0.005 3.995 19 H 0.070 0.930 20 H 0.199 0.801 21 H 0.072 0.928 22 H 0.079 0.921 23 H 0.084 0.916 24 H 0.112 0.888 25 H 0.072 0.928 26 H 0.131 0.869 27 H 0.069 0.931 28 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 5.018 -8.979 -1.860 10.453 hybrid contribution 0.201 1.160 -0.093 1.181 sum 5.219 -7.819 -1.953 9.602 Atomic orbital electron populations 1.70216 1.07660 1.27311 1.48711 1.25913 0.95454 1.02904 0.93495 0.85595 0.78721 0.79010 0.78498 1.19688 1.21048 1.19021 1.22077 0.93549 0.92544 1.53716 0.91982 1.19156 0.87538 0.90830 0.84645 0.96365 1.86507 1.39211 1.96403 1.16030 1.22265 0.97907 0.96451 0.98943 0.92287 1.21552 0.97758 0.93887 1.01784 1.22175 0.98120 0.98880 0.99321 1.22783 0.97048 0.85551 0.96892 1.87857 1.34512 1.15044 1.94944 1.22424 0.92313 0.88623 0.96158 0.93035 0.80101 0.92807 0.92072 0.91637 0.88837 0.92752 0.86863 0.93111 0.89506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -54.03 12.84 21.45 0.28 -53.76 15 2 C 0.02 1.37 5.40 84.65 0.46 1.82 15 3 Si 0.96 43.37 29.54 68.60 2.03 45.40 15 4 H -0.27 -11.90 7.11 99.48 0.71 -11.19 15 5 H -0.28 -12.77 7.11 99.48 0.71 -12.06 15 6 H -0.27 -11.63 7.11 99.48 0.71 -10.93 15 7 C -0.58 -31.62 8.07 25.60 0.21 -31.41 15 8 H 0.06 3.26 6.74 -2.91 -0.02 3.25 15 9 C 0.24 12.02 2.64 29.85 0.08 12.10 15 10 H 0.02 1.07 8.14 -2.39 -0.02 1.05 15 11 O -0.58 -29.54 11.97 -148.98 -1.78 -31.32 15 12 C -0.14 -5.59 2.23 -10.70 -0.02 -5.61 15 13 H 0.06 2.51 8.14 -2.39 -0.02 2.49 15 14 C -0.11 -3.88 5.20 30.71 0.16 -3.72 15 15 C -0.15 -3.93 6.14 30.68 0.19 -3.74 15 16 C 0.05 1.41 6.84 72.01 0.49 1.90 15 17 O -0.40 -13.88 10.76 -148.98 -1.60 -15.49 15 18 C 0.08 3.05 5.58 72.01 0.40 3.45 15 19 H 0.26 14.79 8.31 -92.71 -0.77 14.02 15 20 H 0.35 16.02 7.28 -74.05 -0.54 15.48 15 21 H 0.05 1.88 8.14 -2.39 -0.02 1.86 15 22 H 0.06 2.17 7.61 -2.38 -0.02 2.15 15 23 H 0.06 1.76 8.14 -2.38 -0.02 1.74 15 24 H 0.09 1.97 8.14 -2.38 -0.02 1.95 15 25 H 0.05 1.34 8.14 -2.38 -0.02 1.32 15 26 H 0.11 2.32 8.14 -2.39 -0.02 2.30 15 27 H 0.05 1.82 6.67 -2.39 -0.02 1.81 15 28 H 0.09 3.49 6.73 -2.39 -0.02 3.47 15 Total: -1.00 -63.15 228.86 1.48 -61.66 By element: Atomic # 1 Polarization: 18.10 SS G_CDS: 0.61 Total: 18.71 kcal Atomic # 6 Polarization: -27.17 SS G_CDS: 1.96 Total: -25.21 kcal Atomic # 7 Polarization: -54.03 SS G_CDS: 0.28 Total: -53.76 kcal Atomic # 8 Polarization: -43.42 SS G_CDS: -3.39 Total: -46.81 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 2.03 Total: 45.40 kcal Total: -63.15 1.48 -61.66 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085878878.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.139 kcal (2) G-P(sol) polarization free energy of solvation -63.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds