Wall clock time and date at job start Mon Mar 30 2020 02:02:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86804 * 119.99742 * 2 1 4 4 H 1.48498 * 109.47007 * 269.99999 * 3 2 1 5 5 H 1.48506 * 109.47176 * 29.99849 * 3 2 1 6 6 H 1.48499 * 109.47046 * 149.99612 * 3 2 1 7 7 C 1.37874 * 120.00418 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00055 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99835 * 0.02562 * 7 2 1 10 10 H 1.08998 * 109.47449 * 300.00276 * 9 7 2 11 11 O 1.42904 * 109.47101 * 59.99855 * 9 7 2 12 12 C 1.52996 * 109.47244 * 179.97438 * 9 7 2 13 13 H 1.09001 * 109.52347 * 299.87801 * 12 9 7 14 14 C 1.53180 * 109.52221 * 179.68662 * 12 9 7 15 15 C 1.53180 * 109.03380 * 183.11534 * 14 12 9 16 16 C 1.53096 * 109.16300 * 56.98167 * 15 14 12 17 17 O 1.42905 * 109.41404 * 302.38785 * 16 15 14 18 18 C 1.42905 * 114.09321 * 61.16204 * 17 16 15 19 19 H 0.96998 * 119.99772 * 0.02562 * 1 2 3 20 20 H 0.96702 * 113.99994 * 59.99773 * 11 9 7 21 21 H 1.08996 * 109.54290 * 302.97973 * 14 12 9 22 22 H 1.08991 * 109.54625 * 63.16072 * 14 12 9 23 23 H 1.09001 * 109.52400 * 297.07495 * 15 14 12 24 24 H 1.09004 * 109.52264 * 176.88591 * 15 14 12 25 25 H 1.09005 * 109.47867 * 182.40583 * 16 15 14 26 26 H 1.09001 * 109.48124 * 62.37304 * 16 15 14 27 27 H 1.09000 * 109.48199 * 58.82419 * 18 17 16 28 28 H 1.09009 * 109.47312 * 178.84764 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6528 0.7000 6 1 3.5467 1.4403 0.7001 7 6 2.0047 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4991 0.0005 10 1 0.6242 -2.5567 0.8902 11 8 0.4301 -2.5751 -1.1666 12 6 2.2455 -3.6620 0.0005 13 1 2.8712 -3.6063 -0.8903 14 6 1.4808 -4.9892 0.0084 15 6 2.4846 -6.1436 0.0871 16 6 3.3561 -5.9678 1.3334 17 8 4.0148 -4.7008 1.2775 18 6 3.1262 -3.5820 1.2502 19 1 -0.4850 0.8400 -0.0004 20 1 0.9225 -2.5299 -1.9976 21 1 0.8179 -5.0230 0.8730 22 1 0.8931 -5.0770 -0.9053 23 1 3.1152 -6.1392 -0.8020 24 1 1.9473 -7.0900 0.1489 25 1 4.1005 -6.7631 1.3716 26 1 2.7297 -6.0128 2.2243 27 1 2.4968 -3.5959 2.1400 28 1 3.7051 -2.6586 1.2287 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085878881.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:53 Heat of formation + Delta-G solvation = -117.304393 kcal Electronic energy + Delta-G solvation = -11942.146857 eV Core-core repulsion = 9764.385145 eV Total energy + Delta-G solvation = -2177.761712 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -38.87475 -35.78273 -32.75947 -32.10657 -30.85678 -26.51041 -24.21100 -23.59335 -20.92764 -19.44124 -16.90845 -15.72735 -15.48285 -14.60212 -14.56430 -14.29380 -13.33436 -13.26918 -12.68593 -12.17102 -12.02011 -11.39540 -10.94254 -10.90059 -10.72809 -10.47285 -10.35090 -10.04075 -9.81027 -9.12023 -8.69313 -8.57217 -8.07923 -6.00936 -4.19247 3.27977 3.35216 3.38081 4.37770 4.41250 5.24594 5.26116 5.33014 5.40787 5.67594 5.69481 5.95052 6.04961 6.19328 6.27789 6.35939 6.45200 6.60053 6.79004 6.87823 6.96465 7.70756 7.74617 7.85842 8.18394 8.83731 9.37735 9.58149 11.03157 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.059343 B = 0.012014 C = 0.010475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 471.719732 B = 2330.049133 C = 2672.499056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.861 5.861 2 C 0.079 3.921 3 Si 0.888 3.112 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.572 4.572 8 H 0.058 0.942 9 C 0.236 3.764 10 H 0.054 0.946 11 O -0.565 6.565 12 C -0.144 4.144 13 H 0.065 0.935 14 C -0.113 4.113 15 C -0.155 4.155 16 C 0.061 3.939 17 O -0.394 6.394 18 C 0.075 3.925 19 H 0.260 0.740 20 H 0.345 0.655 21 H 0.055 0.945 22 H 0.067 0.933 23 H 0.065 0.935 24 H 0.062 0.938 25 H 0.082 0.918 26 H 0.043 0.957 27 H 0.044 0.956 28 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.289 -8.210 0.951 9.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.496 5.496 2 C -0.127 4.127 3 Si 0.715 3.285 4 H -0.205 1.205 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.610 4.610 8 H 0.077 0.923 9 C 0.178 3.822 10 H 0.072 0.928 11 O -0.367 6.367 12 C -0.163 4.163 13 H 0.083 0.917 14 C -0.150 4.150 15 C -0.193 4.193 16 C -0.016 4.016 17 O -0.313 6.313 18 C -0.001 4.001 19 H 0.070 0.930 20 H 0.188 0.812 21 H 0.074 0.926 22 H 0.085 0.915 23 H 0.084 0.916 24 H 0.081 0.919 25 H 0.100 0.900 26 H 0.062 0.938 27 H 0.062 0.938 28 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 3.831 -8.126 1.424 9.097 hybrid contribution 0.582 0.981 -0.398 1.208 sum 4.413 -7.145 1.026 8.461 Atomic orbital electron populations 1.70081 1.05976 1.26426 1.47155 1.25065 0.94679 0.99172 0.93830 0.86691 0.80024 0.83566 0.78230 1.20547 1.21155 1.19744 1.21726 0.93206 0.91505 1.54560 0.92349 1.19326 0.87543 0.89313 0.85990 0.92799 1.86551 1.38403 1.96306 1.15462 1.22513 0.98655 0.96682 0.98488 0.91665 1.21581 0.97142 0.94095 1.02216 1.22210 0.98808 0.99086 0.99200 1.22468 0.95963 0.86556 0.96580 1.87880 1.34310 1.14200 1.94894 1.22630 0.92648 0.88170 0.96680 0.93005 0.81168 0.92593 0.91461 0.91641 0.91902 0.89994 0.93831 0.93815 0.87891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.41 12.84 55.43 0.71 -24.70 15 2 C 0.08 2.19 5.40 -17.82 -0.10 2.09 15 3 Si 0.89 21.09 29.54 -169.99 -5.02 16.07 15 4 H -0.28 -6.59 7.11 56.52 0.40 -6.19 15 5 H -0.29 -6.76 7.11 56.52 0.40 -6.36 15 6 H -0.27 -6.36 7.11 56.52 0.40 -5.96 15 7 C -0.57 -15.43 8.06 -34.44 -0.28 -15.71 15 8 H 0.06 1.54 6.71 -52.49 -0.35 1.18 15 9 C 0.24 5.90 2.41 -27.88 -0.07 5.83 15 10 H 0.05 1.49 8.14 -51.93 -0.42 1.07 15 11 O -0.56 -14.46 12.14 -35.23 -0.43 -14.89 15 12 C -0.14 -2.97 2.12 -90.48 -0.19 -3.16 15 13 H 0.06 1.37 8.14 -51.93 -0.42 0.95 15 14 C -0.11 -2.02 5.12 -26.54 -0.14 -2.15 15 15 C -0.16 -2.31 6.14 -26.59 -0.16 -2.47 15 16 C 0.06 0.92 6.84 37.21 0.25 1.17 15 17 O -0.39 -7.28 10.77 -35.23 -0.38 -7.66 15 18 C 0.07 1.48 5.82 37.21 0.22 1.69 15 19 H 0.26 7.28 8.31 -40.82 -0.34 6.94 15 20 H 0.34 7.86 9.04 45.56 0.41 8.27 15 21 H 0.06 1.01 8.14 -51.93 -0.42 0.59 15 22 H 0.07 1.22 7.80 -51.93 -0.40 0.81 15 23 H 0.06 0.97 8.14 -51.93 -0.42 0.55 15 24 H 0.06 0.79 8.14 -51.93 -0.42 0.37 15 25 H 0.08 1.02 8.14 -51.93 -0.42 0.60 15 26 H 0.04 0.62 8.14 -51.93 -0.42 0.20 15 27 H 0.04 0.85 8.14 -51.93 -0.42 0.43 15 28 H 0.10 2.13 6.71 -51.92 -0.35 1.79 15 LS Contribution 232.23 15.07 3.50 3.50 Total: -1.00 -29.87 232.23 -5.29 -35.16 By element: Atomic # 1 Polarization: 8.44 SS G_CDS: -3.21 Total: 5.23 kcal Atomic # 6 Polarization: -12.24 SS G_CDS: -0.46 Total: -12.71 kcal Atomic # 7 Polarization: -25.41 SS G_CDS: 0.71 Total: -24.70 kcal Atomic # 8 Polarization: -21.75 SS G_CDS: -0.81 Total: -22.55 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 3.50 Total: 3.50 kcal Total: -29.87 -5.29 -35.16 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085878881.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.146 kcal (2) G-P(sol) polarization free energy of solvation -29.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds