Wall clock time and date at job start Mon Mar 30 2020 02:02:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31525 * 1 3 3 Si 1.86802 * 120.00025 * 2 1 4 4 H 1.48497 * 109.47112 * 270.00378 * 3 2 1 5 5 H 1.48502 * 109.46713 * 30.00511 * 3 2 1 6 6 H 1.48498 * 109.47119 * 149.99863 * 3 2 1 7 7 C 1.37876 * 119.99965 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99907 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00071 * 359.97438 * 7 2 1 10 10 H 1.09004 * 109.47103 * 59.99970 * 9 7 2 11 11 O 1.42900 * 109.47178 * 300.00072 * 9 7 2 12 12 C 1.53000 * 109.47219 * 179.97438 * 9 7 2 13 13 H 1.09005 * 109.56864 * 60.15852 * 12 9 7 14 14 C 1.53176 * 109.52182 * 180.31141 * 12 9 7 15 15 C 1.53181 * 109.03564 * 176.88609 * 14 12 9 16 16 C 1.53096 * 109.16280 * 303.02405 * 15 14 12 17 17 O 1.42905 * 109.41382 * 57.60845 * 16 15 14 18 18 C 1.42902 * 114.09583 * 298.83698 * 17 16 15 19 19 H 0.96996 * 119.99275 * 359.97438 * 1 2 3 20 20 H 0.96705 * 114.00108 * 300.00333 * 11 9 7 21 21 H 1.09005 * 109.54225 * 57.02232 * 14 12 9 22 22 H 1.08991 * 109.54673 * 296.75450 * 14 12 9 23 23 H 1.08998 * 109.52547 * 183.11606 * 15 14 12 24 24 H 1.09004 * 109.52249 * 62.92485 * 15 14 12 25 25 H 1.08996 * 109.47593 * 177.59033 * 16 15 14 26 26 H 1.08997 * 109.48187 * 297.62027 * 16 15 14 27 27 H 1.09003 * 109.47624 * 181.14087 * 18 17 16 28 28 H 1.08998 * 109.47961 * 301.16646 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3153 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4467 2.6526 0.7002 6 1 3.5468 1.4402 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 1 0.6241 -2.5567 -0.8903 11 8 0.4300 -2.5751 1.1665 12 6 2.2454 -3.6621 -0.0018 13 1 2.8718 -3.6079 0.8886 14 6 1.4806 -4.9893 -0.0097 15 6 2.4843 -6.1437 -0.0896 16 6 3.3550 -5.9673 -1.3364 17 8 4.0137 -4.7004 -1.2804 18 6 3.1252 -3.5816 -1.2520 19 1 -0.4849 0.8401 0.0004 20 1 0.9224 -2.5299 1.9976 21 1 0.8170 -5.0226 -0.8738 22 1 0.8949 -5.0781 0.9052 23 1 1.9469 -7.0900 -0.1514 24 1 3.1156 -6.1397 0.7990 25 1 4.0992 -6.7627 -1.3754 26 1 2.7280 -6.0120 -2.2269 27 1 3.7041 -2.6582 -1.2303 28 1 2.4954 -3.5950 -2.1415 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085878885.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:54 Heat of formation + Delta-G solvation = -139.375002 kcal Electronic energy + Delta-G solvation = -11942.743123 eV Core-core repulsion = 9764.024357 eV Total energy + Delta-G solvation = -2178.718765 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.36478 -37.65287 -34.38909 -34.11657 -32.41099 -28.42229 -25.69725 -25.32353 -22.57224 -21.01448 -18.95746 -17.19566 -17.00891 -16.64143 -16.26682 -15.79115 -15.12744 -14.69848 -14.48854 -13.84892 -13.42219 -13.28494 -12.86543 -12.73070 -12.30358 -12.06290 -11.97898 -11.64847 -11.39751 -10.89486 -10.68747 -10.28770 -10.03675 -8.13005 -6.38017 1.40791 1.41590 1.52152 2.39529 3.00445 3.16045 3.92878 3.98383 4.04329 4.11886 4.36437 4.50481 4.62079 4.66406 4.87554 4.89138 4.98121 5.11545 5.14474 5.34122 5.42485 5.65575 5.79922 6.10594 6.32880 6.73598 7.34017 7.53738 8.91412 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.059335 B = 0.012014 C = 0.010475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 471.786440 B = 2330.034076 C = 2672.483758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.024 3.976 3 Si 0.957 3.043 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.264 1.264 7 C -0.580 4.580 8 H 0.062 0.938 9 C 0.236 3.764 10 H 0.020 0.980 11 O -0.580 6.580 12 C -0.134 4.134 13 H 0.061 0.939 14 C -0.111 4.111 15 C -0.147 4.147 16 C 0.052 3.948 17 O -0.404 6.404 18 C 0.083 3.917 19 H 0.261 0.739 20 H 0.356 0.644 21 H 0.050 0.950 22 H 0.062 0.938 23 H 0.093 0.907 24 H 0.068 0.932 25 H 0.115 0.885 26 H 0.052 0.948 27 H 0.089 0.911 28 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.516 -9.054 -0.937 10.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.178 4.178 3 Si 0.781 3.219 4 H -0.199 1.199 5 H -0.211 1.211 6 H -0.189 1.189 7 C -0.618 4.618 8 H 0.080 0.920 9 C 0.178 3.822 10 H 0.038 0.962 11 O -0.384 6.384 12 C -0.153 4.153 13 H 0.080 0.920 14 C -0.148 4.148 15 C -0.184 4.184 16 C -0.024 4.024 17 O -0.323 6.323 18 C 0.006 3.994 19 H 0.070 0.930 20 H 0.201 0.799 21 H 0.068 0.932 22 H 0.081 0.919 23 H 0.112 0.888 24 H 0.086 0.914 25 H 0.133 0.867 26 H 0.070 0.930 27 H 0.107 0.893 28 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 5.077 -8.988 -1.399 10.417 hybrid contribution 0.185 1.168 0.372 1.240 sum 5.262 -7.820 -1.026 9.481 Atomic orbital electron populations 1.70219 1.07674 1.27299 1.48765 1.25913 0.95442 1.02904 0.93510 0.85601 0.78795 0.79042 0.78420 1.19855 1.21056 1.18856 1.22089 0.93549 0.92545 1.53625 0.91952 1.19190 0.87539 0.90795 0.84644 0.96246 1.86487 1.39251 1.96432 1.16195 1.22291 0.97762 0.96437 0.98808 0.92038 1.21543 0.97621 0.93946 1.01741 1.22170 0.98094 0.98871 0.99300 1.22804 0.97117 0.85585 0.96940 1.87861 1.34457 1.15052 1.94926 1.22380 0.92327 0.88659 0.96031 0.93050 0.79901 0.93165 0.91922 0.88824 0.91370 0.86736 0.93012 0.89326 0.94043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -54.10 12.84 21.45 0.28 -53.82 15 2 C 0.02 1.36 5.40 84.65 0.46 1.82 15 3 Si 0.96 43.35 29.54 68.60 2.03 45.38 15 4 H -0.27 -12.03 7.11 99.48 0.71 -11.32 15 5 H -0.28 -12.78 7.11 99.48 0.71 -12.07 15 6 H -0.26 -11.51 7.11 99.48 0.71 -10.80 15 7 C -0.58 -31.50 8.06 25.60 0.21 -31.29 15 8 H 0.06 3.27 6.72 -2.91 -0.02 3.25 15 9 C 0.24 11.99 2.41 29.85 0.07 12.06 15 10 H 0.02 1.12 8.14 -2.38 -0.02 1.10 15 11 O -0.58 -30.10 12.14 -148.98 -1.81 -31.90 15 12 C -0.13 -5.46 2.12 -10.70 -0.02 -5.48 15 13 H 0.06 2.54 8.14 -2.38 -0.02 2.52 15 14 C -0.11 -3.83 5.12 30.71 0.16 -3.67 15 15 C -0.15 -3.90 6.14 30.69 0.19 -3.71 15 16 C 0.05 1.38 6.84 72.01 0.49 1.87 15 17 O -0.40 -14.10 10.77 -148.98 -1.60 -15.71 15 18 C 0.08 3.21 5.82 72.01 0.42 3.63 15 19 H 0.26 14.80 8.31 -92.71 -0.77 14.03 15 20 H 0.36 16.34 9.04 -74.05 -0.67 15.67 15 21 H 0.05 1.77 8.14 -2.38 -0.02 1.75 15 22 H 0.06 2.20 7.80 -2.39 -0.02 2.18 15 23 H 0.09 1.97 8.14 -2.39 -0.02 1.95 15 24 H 0.07 1.80 8.14 -2.38 -0.02 1.78 15 25 H 0.11 2.36 8.14 -2.39 -0.02 2.34 15 26 H 0.05 1.31 8.14 -2.39 -0.02 1.30 15 27 H 0.09 3.65 6.71 -2.39 -0.02 3.64 15 28 H 0.04 1.61 8.14 -2.39 -0.02 1.59 15 Total: -1.00 -63.24 232.24 1.33 -61.91 By element: Atomic # 1 Polarization: 18.44 SS G_CDS: 0.47 Total: 18.91 kcal Atomic # 6 Polarization: -26.74 SS G_CDS: 1.97 Total: -24.77 kcal Atomic # 7 Polarization: -54.10 SS G_CDS: 0.28 Total: -53.82 kcal Atomic # 8 Polarization: -44.20 SS G_CDS: -3.41 Total: -47.61 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 2.03 Total: 45.38 kcal Total: -63.24 1.33 -61.91 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085878885.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.467 kcal (2) G-P(sol) polarization free energy of solvation -63.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds