Wall clock time and date at job start Mon Mar 30 2020 02:02:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00588 * 2 1 4 4 H 1.48501 * 109.47364 * 179.72223 * 3 2 1 5 5 H 1.48508 * 109.46883 * 299.72346 * 3 2 1 6 6 H 1.48497 * 109.46870 * 59.72156 * 3 2 1 7 7 C 1.37884 * 119.99573 * 179.72306 * 2 1 3 8 8 H 1.07999 * 120.00052 * 180.28126 * 7 2 1 9 9 C 1.50696 * 119.99746 * 0.27650 * 7 2 1 10 10 H 1.08999 * 109.47742 * 60.00602 * 9 7 2 11 11 O 1.42898 * 109.47318 * 299.99836 * 9 7 2 12 12 C 1.53002 * 109.46919 * 180.02562 * 9 7 2 13 13 H 1.09001 * 109.51986 * 305.12434 * 12 9 7 14 14 C 1.53178 * 109.52273 * 185.00010 * 12 9 7 15 15 C 1.53178 * 109.03796 * 183.11142 * 14 12 9 16 16 C 1.53103 * 109.16163 * 56.97849 * 15 14 12 17 17 O 1.42902 * 109.41487 * 302.39459 * 16 15 14 18 18 C 1.42900 * 114.09794 * 61.15471 * 17 16 15 19 19 H 0.97001 * 120.00651 * 179.97438 * 1 2 3 20 20 H 0.96706 * 114.00468 * 300.00132 * 11 9 7 21 21 H 1.08997 * 109.54320 * 302.97603 * 14 12 9 22 22 H 1.08995 * 109.54814 * 63.15679 * 14 12 9 23 23 H 1.09003 * 109.52536 * 176.88535 * 15 14 12 24 24 H 1.08998 * 109.52572 * 297.07800 * 15 14 12 25 25 H 1.09003 * 109.47645 * 62.37591 * 16 15 14 26 26 H 1.08993 * 109.47892 * 182.40987 * 16 15 14 27 27 H 1.09000 * 109.47813 * 178.85957 * 18 17 16 28 28 H 1.09000 * 109.48063 * 58.83030 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.7093 1.3462 0.0068 5 1 1.8957 2.3934 -1.2159 6 1 1.8855 2.3993 1.2091 7 6 2.0045 -1.1941 0.0058 8 1 3.0845 -1.1942 0.0104 9 6 1.2508 -2.4991 0.0058 10 1 0.6280 -2.5591 -0.8867 11 8 0.4244 -2.5720 1.1693 12 6 2.2450 -3.6621 0.0134 13 1 2.9348 -3.5571 -0.8240 14 6 1.4850 -4.9861 -0.1124 15 6 2.4826 -6.1452 -0.0254 16 6 3.2580 -6.0431 1.2908 17 8 3.9161 -4.7764 1.3574 18 6 3.0295 -3.6560 1.3280 19 1 -0.4851 -0.8400 -0.0004 20 1 0.9131 -2.5247 2.0025 21 1 0.7592 -5.0682 0.6967 22 1 0.9675 -5.0199 -1.0711 23 1 1.9443 -7.0924 -0.0585 24 1 3.1781 -6.0909 -0.8629 25 1 2.5667 -6.1381 2.1282 26 1 3.9992 -6.8408 1.3387 27 1 3.6062 -2.7341 1.4028 28 1 2.3353 -3.7197 2.1659 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085878889.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:56 Heat of formation + Delta-G solvation = -122.695714 kcal Electronic energy + Delta-G solvation = -12048.113684 eV Core-core repulsion = 9870.118187 eV Total energy + Delta-G solvation = -2177.995497 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -39.07127 -36.09983 -32.93541 -32.11773 -30.70905 -26.26862 -24.55602 -23.49184 -21.19831 -19.31466 -17.22852 -15.99553 -15.73057 -14.94520 -14.36484 -13.81112 -13.58359 -13.42249 -12.89460 -12.34453 -12.16857 -11.53946 -11.00769 -10.77223 -10.68114 -10.43207 -10.13163 -10.11628 -9.87297 -9.39591 -8.80406 -8.44268 -8.00396 -6.35303 -4.19035 3.42738 3.45583 3.59427 4.30827 4.50748 5.17157 5.23757 5.31757 5.33422 5.57695 5.62328 5.84539 5.92384 5.95901 6.11910 6.20587 6.35953 6.40551 6.63522 6.74777 6.96100 7.44941 7.63156 8.00019 8.36138 8.85997 9.06894 9.66834 11.04318 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.064699 B = 0.011811 C = 0.010804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 432.669425 B = 2370.086145 C = 2591.057585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.033 3.967 3 Si 1.070 2.930 4 H -0.289 1.289 5 H -0.287 1.287 6 H -0.287 1.287 7 C -0.649 4.649 8 H 0.052 0.948 9 C 0.218 3.782 10 H 0.050 0.950 11 O -0.582 6.582 12 C -0.138 4.138 13 H 0.071 0.929 14 C -0.116 4.116 15 C -0.155 4.155 16 C 0.062 3.938 17 O -0.391 6.391 18 C 0.072 3.928 19 H 0.284 0.716 20 H 0.351 0.649 21 H 0.064 0.936 22 H 0.058 0.942 23 H 0.063 0.937 24 H 0.065 0.935 25 H 0.044 0.956 26 H 0.083 0.917 27 H 0.102 0.898 28 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.676 -8.719 1.704 10.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.175 4.175 3 Si 0.899 3.101 4 H -0.215 1.215 5 H -0.213 1.213 6 H -0.213 1.213 7 C -0.686 4.686 8 H 0.071 0.929 9 C 0.161 3.839 10 H 0.068 0.932 11 O -0.388 6.388 12 C -0.157 4.157 13 H 0.090 0.910 14 C -0.154 4.154 15 C -0.193 4.193 16 C -0.015 4.015 17 O -0.310 6.310 18 C -0.004 4.004 19 H 0.096 0.904 20 H 0.197 0.803 21 H 0.083 0.917 22 H 0.077 0.923 23 H 0.082 0.918 24 H 0.084 0.916 25 H 0.063 0.937 26 H 0.102 0.898 27 H 0.120 0.880 28 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 4.197 -7.122 1.253 8.361 hybrid contribution 0.358 -1.665 0.221 1.718 sum 4.555 -8.787 1.474 10.007 Atomic orbital electron populations 1.70581 1.06966 1.32281 1.43080 1.25802 0.96504 1.02534 0.92708 0.83550 0.74553 0.75003 0.77004 1.21494 1.21324 1.21311 1.22536 0.94489 0.92438 1.59168 0.92937 1.19512 0.87975 0.91128 0.85313 0.93234 1.86479 1.39578 1.96498 1.16216 1.22329 0.98911 0.96059 0.98368 0.91045 1.21625 0.97495 0.94252 1.01981 1.22202 0.99138 0.99052 0.98866 1.22473 0.96316 0.86517 0.96215 1.87882 1.34469 1.14080 1.94605 1.22645 0.92923 0.88415 0.96432 0.90404 0.80308 0.91713 0.92325 0.91793 0.91603 0.93737 0.89842 0.88008 0.93773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.24 13.53 55.43 0.75 -26.49 15 2 C 0.03 0.94 5.40 -17.82 -0.10 0.85 15 3 Si 1.07 25.05 29.90 -169.99 -5.08 19.96 15 4 H -0.29 -6.44 7.11 56.52 0.40 -6.04 15 5 H -0.29 -6.61 7.11 56.52 0.40 -6.21 15 6 H -0.29 -6.60 7.11 56.52 0.40 -6.20 15 7 C -0.65 -17.77 8.10 -34.44 -0.28 -18.05 15 8 H 0.05 1.43 7.08 -52.49 -0.37 1.06 15 9 C 0.22 5.42 2.19 -27.88 -0.06 5.36 15 10 H 0.05 1.35 8.01 -51.93 -0.42 0.93 15 11 O -0.58 -14.42 11.39 -35.23 -0.40 -14.82 15 12 C -0.14 -2.85 2.17 -90.48 -0.20 -3.04 15 13 H 0.07 1.55 8.14 -51.93 -0.42 1.12 15 14 C -0.12 -2.06 5.24 -26.55 -0.14 -2.20 15 15 C -0.15 -2.29 6.14 -26.59 -0.16 -2.45 15 16 C 0.06 0.92 6.84 37.21 0.25 1.17 15 17 O -0.39 -7.17 10.77 -35.23 -0.38 -7.55 15 18 C 0.07 1.39 5.54 37.20 0.21 1.60 15 19 H 0.28 8.80 6.47 -40.82 -0.26 8.53 15 20 H 0.35 7.86 7.12 45.56 0.32 8.19 15 21 H 0.06 1.18 7.76 -51.93 -0.40 0.78 15 22 H 0.06 1.03 8.14 -51.93 -0.42 0.61 15 23 H 0.06 0.80 8.14 -51.93 -0.42 0.37 15 24 H 0.07 0.98 8.14 -51.93 -0.42 0.55 15 25 H 0.04 0.63 8.14 -51.93 -0.42 0.20 15 26 H 0.08 1.03 8.14 -51.93 -0.42 0.61 15 27 H 0.10 2.09 7.05 -51.93 -0.37 1.73 15 28 H 0.04 0.82 6.58 -51.93 -0.34 0.48 15 LS Contribution 227.45 15.07 3.43 3.43 Total: -1.00 -30.19 227.45 -5.33 -35.52 By element: Atomic # 1 Polarization: 9.88 SS G_CDS: -3.17 Total: 6.71 kcal Atomic # 6 Polarization: -16.30 SS G_CDS: -0.47 Total: -16.77 kcal Atomic # 7 Polarization: -27.24 SS G_CDS: 0.75 Total: -26.49 kcal Atomic # 8 Polarization: -21.58 SS G_CDS: -0.78 Total: -22.36 kcal Atomic # 14 Polarization: 25.05 SS G_CDS: -5.08 Total: 19.96 kcal Total LS contribution 3.43 Total: 3.43 kcal Total: -30.19 -5.33 -35.52 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085878889.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.173 kcal (2) G-P(sol) polarization free energy of solvation -30.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds