Wall clock time and date at job start Mon Mar 30 2020 02:02:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00588 * 2 1 4 4 H 1.48501 * 109.47364 * 179.72223 * 3 2 1 5 5 H 1.48508 * 109.46883 * 299.72346 * 3 2 1 6 6 H 1.48497 * 109.46870 * 59.72156 * 3 2 1 7 7 C 1.37884 * 119.99573 * 179.72306 * 2 1 3 8 8 H 1.07999 * 120.00052 * 180.28126 * 7 2 1 9 9 C 1.50696 * 119.99746 * 0.27650 * 7 2 1 10 10 H 1.08999 * 109.47742 * 60.00602 * 9 7 2 11 11 O 1.42898 * 109.47318 * 299.99836 * 9 7 2 12 12 C 1.53002 * 109.46919 * 180.02562 * 9 7 2 13 13 H 1.09001 * 109.51986 * 305.12434 * 12 9 7 14 14 C 1.53178 * 109.52273 * 185.00010 * 12 9 7 15 15 C 1.53178 * 109.03796 * 183.11142 * 14 12 9 16 16 C 1.53103 * 109.16163 * 56.97849 * 15 14 12 17 17 O 1.42902 * 109.41487 * 302.39459 * 16 15 14 18 18 C 1.42900 * 114.09794 * 61.15471 * 17 16 15 19 19 H 0.97001 * 120.00651 * 179.97438 * 1 2 3 20 20 H 0.96706 * 114.00468 * 300.00132 * 11 9 7 21 21 H 1.08997 * 109.54320 * 302.97603 * 14 12 9 22 22 H 1.08995 * 109.54814 * 63.15679 * 14 12 9 23 23 H 1.09003 * 109.52536 * 176.88535 * 15 14 12 24 24 H 1.08998 * 109.52572 * 297.07800 * 15 14 12 25 25 H 1.09003 * 109.47645 * 62.37591 * 16 15 14 26 26 H 1.08993 * 109.47892 * 182.40987 * 16 15 14 27 27 H 1.09000 * 109.47813 * 178.85957 * 18 17 16 28 28 H 1.09000 * 109.48063 * 58.83030 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.7093 1.3462 0.0068 5 1 1.8957 2.3934 -1.2159 6 1 1.8855 2.3993 1.2091 7 6 2.0045 -1.1941 0.0058 8 1 3.0845 -1.1942 0.0104 9 6 1.2508 -2.4991 0.0058 10 1 0.6280 -2.5591 -0.8867 11 8 0.4244 -2.5720 1.1693 12 6 2.2450 -3.6621 0.0134 13 1 2.9348 -3.5571 -0.8240 14 6 1.4850 -4.9861 -0.1124 15 6 2.4826 -6.1452 -0.0254 16 6 3.2580 -6.0431 1.2908 17 8 3.9161 -4.7764 1.3574 18 6 3.0295 -3.6560 1.3280 19 1 -0.4851 -0.8400 -0.0004 20 1 0.9131 -2.5247 2.0025 21 1 0.7592 -5.0682 0.6967 22 1 0.9675 -5.0199 -1.0711 23 1 1.9443 -7.0924 -0.0585 24 1 3.1781 -6.0909 -0.8629 25 1 2.5667 -6.1381 2.1282 26 1 3.9992 -6.8408 1.3387 27 1 3.6062 -2.7341 1.4028 28 1 2.3353 -3.7197 2.1659 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085878889.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:56 Heat of formation + Delta-G solvation = -144.708591 kcal Electronic energy + Delta-G solvation = -12049.068234 eV Core-core repulsion = 9870.118187 eV Total energy + Delta-G solvation = -2178.950047 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -40.58505 -37.93924 -34.48430 -34.22029 -32.24625 -28.18109 -26.04302 -25.28963 -22.82991 -20.86761 -19.32259 -17.66333 -17.17727 -16.55120 -15.89569 -15.69692 -15.20715 -15.05540 -14.67196 -14.21626 -13.54693 -13.32382 -12.68410 -12.41517 -12.27224 -12.01520 -11.93165 -11.81655 -11.43177 -11.10662 -10.66237 -10.30453 -10.02403 -8.60851 -6.45599 1.53356 1.61460 1.78178 2.55554 2.95330 3.17222 3.83390 3.89686 3.93491 4.03279 4.05970 4.29717 4.53790 4.54916 4.78856 4.80682 4.94044 4.98579 5.05793 5.22239 5.35441 5.49152 5.87524 6.14209 6.25955 6.57477 7.12504 7.49860 8.76527 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.064699 B = 0.011811 C = 0.010804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 432.669425 B = 2370.086145 C = 2591.057585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.019 4.019 3 Si 1.119 2.881 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.279 1.279 7 C -0.653 4.653 8 H 0.052 0.948 9 C 0.218 3.782 10 H 0.018 0.982 11 O -0.590 6.590 12 C -0.130 4.130 13 H 0.058 0.942 14 C -0.114 4.114 15 C -0.147 4.147 16 C 0.053 3.947 17 O -0.403 6.403 18 C 0.082 3.918 19 H 0.268 0.732 20 H 0.362 0.638 21 H 0.060 0.940 22 H 0.054 0.946 23 H 0.095 0.905 24 H 0.065 0.935 25 H 0.055 0.945 26 H 0.115 0.885 27 H 0.085 0.915 28 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.832 -9.656 2.177 11.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.221 4.221 3 Si 0.941 3.059 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.205 1.205 7 C -0.690 4.690 8 H 0.070 0.930 9 C 0.161 3.839 10 H 0.036 0.964 11 O -0.396 6.396 12 C -0.149 4.149 13 H 0.076 0.924 14 C -0.151 4.151 15 C -0.185 4.185 16 C -0.023 4.023 17 O -0.322 6.322 18 C 0.005 3.995 19 H 0.078 0.922 20 H 0.209 0.791 21 H 0.079 0.921 22 H 0.073 0.927 23 H 0.114 0.886 24 H 0.084 0.916 25 H 0.073 0.927 26 H 0.133 0.867 27 H 0.103 0.897 28 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 5.364 -8.089 1.731 9.859 hybrid contribution -0.005 -1.466 0.071 1.468 sum 5.360 -9.555 1.801 11.102 Atomic orbital electron populations 1.70727 1.08050 1.31240 1.45933 1.27278 0.96506 1.06504 0.91777 0.82925 0.74293 0.71323 0.77392 1.19571 1.20712 1.20524 1.22885 0.94657 0.93649 1.57844 0.92959 1.19359 0.88001 0.92258 0.84301 0.96449 1.86427 1.39930 1.96570 1.16672 1.22146 0.97920 0.96035 0.98845 0.92392 1.21584 0.97932 0.93949 1.01658 1.22171 0.98450 0.98878 0.98962 1.22807 0.97505 0.85530 0.96482 1.87867 1.34734 1.14961 1.94626 1.22386 0.92684 0.88746 0.95654 0.92185 0.79143 0.92085 0.92705 0.88626 0.91600 0.92684 0.86656 0.89712 0.92983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.15 13.53 21.45 0.29 -56.86 15 2 C -0.02 -1.08 5.40 84.66 0.46 -0.62 15 3 Si 1.12 50.04 29.90 68.60 2.05 52.09 15 4 H -0.27 -11.21 7.11 99.48 0.71 -10.50 15 5 H -0.28 -12.27 7.11 99.48 0.71 -11.56 15 6 H -0.28 -12.12 7.11 99.48 0.71 -11.42 15 7 C -0.65 -36.04 8.10 25.60 0.21 -35.84 15 8 H 0.05 2.84 7.08 -2.91 -0.02 2.82 15 9 C 0.22 11.03 2.19 29.85 0.07 11.10 15 10 H 0.02 1.00 8.01 -2.39 -0.02 0.98 15 11 O -0.59 -29.48 11.39 -148.98 -1.70 -31.18 15 12 C -0.13 -5.35 2.17 -10.70 -0.02 -5.38 15 13 H 0.06 2.51 8.14 -2.39 -0.02 2.49 15 14 C -0.11 -3.89 5.24 30.71 0.16 -3.73 15 15 C -0.15 -3.88 6.14 30.69 0.19 -3.69 15 16 C 0.05 1.38 6.84 72.02 0.49 1.87 15 17 O -0.40 -13.83 10.77 -148.98 -1.60 -15.44 15 18 C 0.08 3.09 5.54 72.01 0.40 3.48 15 19 H 0.27 17.07 6.47 -92.71 -0.60 16.47 15 20 H 0.36 16.17 7.12 -74.05 -0.53 15.64 15 21 H 0.06 2.13 7.76 -2.39 -0.02 2.11 15 22 H 0.05 1.89 8.14 -2.39 -0.02 1.87 15 23 H 0.10 1.97 8.14 -2.39 -0.02 1.95 15 24 H 0.07 1.76 8.14 -2.39 -0.02 1.74 15 25 H 0.05 1.35 8.14 -2.39 -0.02 1.33 15 26 H 0.12 2.33 8.14 -2.39 -0.02 2.31 15 27 H 0.08 3.45 7.05 -2.39 -0.02 3.44 15 28 H 0.05 1.86 6.58 -2.39 -0.02 1.85 15 Total: -1.00 -64.45 227.45 1.77 -62.67 By element: Atomic # 1 Polarization: 20.73 SS G_CDS: 0.79 Total: 21.52 kcal Atomic # 6 Polarization: -34.75 SS G_CDS: 1.95 Total: -32.80 kcal Atomic # 7 Polarization: -57.15 SS G_CDS: 0.29 Total: -56.86 kcal Atomic # 8 Polarization: -43.32 SS G_CDS: -3.30 Total: -46.62 kcal Atomic # 14 Polarization: 50.04 SS G_CDS: 2.05 Total: 52.09 kcal Total: -64.45 1.77 -62.67 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085878889.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.037 kcal (2) G-P(sol) polarization free energy of solvation -64.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds