Wall clock time and date at job start Mon Mar 30 2020 02:11:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08998 * 109.48895 * 2 1 4 4 C 1.53095 * 109.47885 * 239.97430 * 2 1 3 5 5 C 1.53178 * 109.16080 * 182.40869 * 4 2 1 6 6 O 1.42903 * 109.54397 * 176.84792 * 5 4 2 7 7 C 1.50701 * 109.62041 * 297.07140 * 5 4 2 8 8 H 1.08002 * 119.99413 * 359.59889 * 7 5 4 9 9 C 1.37877 * 120.00108 * 179.60316 * 7 5 4 10 10 N 1.31505 * 120.00304 * 359.97438 * 9 7 5 11 11 Si 1.86805 * 119.99832 * 179.97438 * 9 7 5 12 12 H 1.48504 * 109.46756 * 89.99630 * 11 9 7 13 13 H 1.48496 * 109.47135 * 209.99862 * 11 9 7 14 14 H 1.48500 * 109.47170 * 329.99991 * 11 9 7 15 15 C 1.53176 * 109.03609 * 56.98198 * 5 4 2 16 16 C 1.53095 * 109.16286 * 303.01594 * 15 5 4 17 17 O 1.42903 * 109.41530 * 57.61206 * 16 15 5 18 18 H 1.08994 * 109.47573 * 180.02562 * 1 2 3 19 19 H 1.09004 * 109.47569 * 300.02764 * 1 2 3 20 20 H 1.09009 * 109.47458 * 60.02557 * 1 2 3 21 21 H 1.08998 * 109.52174 * 62.50609 * 4 2 1 22 22 H 1.08998 * 109.52079 * 302.31113 * 4 2 1 23 23 H 0.96703 * 114.00266 * 180.44662 * 6 5 4 24 24 H 0.96993 * 120.00218 * 180.02562 * 10 9 7 25 25 H 1.09001 * 109.52789 * 62.92535 * 15 5 4 26 26 H 1.09007 * 109.52321 * 183.11250 * 15 5 4 27 27 H 1.08997 * 109.47843 * 177.59528 * 16 15 5 28 28 H 1.08997 * 109.48336 * 297.62823 * 16 15 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8936 1.0275 0.0000 4 6 2.0404 -0.7222 -1.2496 5 6 3.5710 -0.7708 -1.2122 6 8 4.0536 -1.5073 -2.3378 7 6 4.1229 0.6309 -1.2527 8 1 3.4507 1.4745 -1.3070 9 6 5.4859 0.8363 -1.2206 10 7 6.3044 -0.1909 -1.1541 11 14 6.1700 2.5738 -1.2715 12 1 6.3096 3.0916 0.1133 13 1 7.4998 2.5631 -1.9324 14 1 5.2445 3.4480 -2.0359 15 6 4.0175 -1.4601 0.0808 16 6 3.4306 -0.7094 1.2790 17 8 2.0065 -0.6742 1.1664 18 1 -0.3634 -1.0276 0.0005 19 1 -0.3634 0.5143 0.8897 20 1 -0.3634 0.5135 -0.8903 21 1 1.7148 -0.1842 -2.1399 22 1 1.6442 -1.7374 -1.2710 23 1 5.0169 -1.5840 -2.3740 24 1 7.2632 -0.0463 -1.1311 25 1 3.6612 -2.4903 0.0863 26 1 5.1058 -1.4499 0.1420 27 1 3.7099 -1.2204 2.2004 28 1 3.8191 0.3089 1.2958 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085879009.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:23 Heat of formation + Delta-G solvation = -112.383404 kcal Electronic energy + Delta-G solvation = -12375.632139 eV Core-core repulsion = 10198.083817 eV Total energy + Delta-G solvation = -2177.548322 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -38.68281 -35.41953 -32.23872 -31.91558 -30.35730 -26.95111 -25.19063 -22.49064 -21.16768 -19.05002 -16.61126 -15.38478 -15.21227 -15.02217 -14.09351 -13.79599 -13.17268 -12.74673 -12.20029 -11.84078 -11.64675 -11.49094 -11.11213 -10.86053 -10.64963 -10.32966 -10.21308 -10.07310 -9.57483 -9.08911 -8.71990 -8.43133 -8.01876 -6.18702 -4.29837 3.20136 3.28040 3.31688 4.28992 4.63055 5.04117 5.51979 5.76826 5.99859 6.09573 6.16188 6.32586 6.36013 6.43158 6.50424 6.58206 6.75778 6.94562 7.08085 7.21959 7.40987 7.54954 7.88990 8.18698 8.22196 8.72574 9.38232 9.54593 10.84120 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.043797 B = 0.016347 C = 0.015174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 639.166043 B = 1712.487586 C = 1844.784188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.097 3.903 3 H 0.063 0.937 4 C -0.125 4.125 5 C 0.247 3.753 6 O -0.594 6.594 7 C -0.532 4.532 8 H 0.060 0.940 9 C 0.069 3.931 10 N -0.898 5.898 11 Si 0.896 3.104 12 H -0.279 1.279 13 H -0.284 1.284 14 H -0.273 1.273 15 C -0.172 4.172 16 C 0.078 3.922 17 O -0.398 6.398 18 H 0.056 0.944 19 H 0.055 0.945 20 H 0.064 0.936 21 H 0.061 0.939 22 H 0.049 0.951 23 H 0.380 0.620 24 H 0.267 0.733 25 H 0.032 0.968 26 H 0.102 0.898 27 H 0.069 0.931 28 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.589 0.668 2.512 5.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.039 3.961 3 H 0.081 0.919 4 C -0.163 4.163 5 C 0.208 3.792 6 O -0.403 6.403 7 C -0.570 4.570 8 H 0.078 0.922 9 C -0.133 4.133 10 N -0.539 5.539 11 Si 0.724 3.276 12 H -0.205 1.205 13 H -0.210 1.210 14 H -0.198 1.198 15 C -0.210 4.210 16 C 0.001 3.999 17 O -0.318 6.318 18 H 0.075 0.925 19 H 0.074 0.926 20 H 0.083 0.917 21 H 0.079 0.921 22 H 0.068 0.932 23 H 0.230 0.770 24 H 0.077 0.923 25 H 0.051 0.949 26 H 0.120 0.880 27 H 0.087 0.913 28 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -5.163 0.503 2.519 5.767 hybrid contribution 1.357 1.064 -0.081 1.727 sum -3.806 1.568 2.437 4.784 Atomic orbital electron populations 1.21778 0.94721 1.02012 1.01430 1.21922 0.92939 0.95996 0.85234 0.91942 1.22026 0.97622 0.99376 0.97271 1.18640 0.88391 0.89536 0.82656 1.86104 1.27889 1.77236 1.49036 1.21759 0.91942 0.92829 1.50442 0.92216 1.25002 0.96945 0.97415 0.93894 1.69579 1.03573 1.29784 1.50978 0.86517 0.78426 0.84396 0.78252 1.20534 1.21011 1.19790 1.22771 1.04323 0.96804 0.97126 1.22410 0.79642 1.00402 0.97422 1.87701 1.22498 1.78324 1.43276 0.92501 0.92632 0.91689 0.92066 0.93222 0.77005 0.92290 0.94946 0.88019 0.91324 0.92565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.30 9.56 37.15 0.36 -1.94 15 2 C 0.10 1.98 3.03 -26.69 -0.08 1.90 15 3 H 0.06 1.33 6.88 -51.93 -0.36 0.98 15 4 C -0.13 -2.83 4.53 -26.59 -0.12 -2.95 15 5 C 0.25 6.30 0.85 -91.59 -0.08 6.23 15 6 O -0.59 -16.02 12.97 -35.23 -0.46 -16.48 15 7 C -0.53 -14.15 6.50 -34.44 -0.22 -14.37 15 8 H 0.06 1.58 6.93 -52.49 -0.36 1.22 15 9 C 0.07 1.80 5.22 -17.82 -0.09 1.71 15 10 N -0.90 -23.79 9.69 55.43 0.54 -23.26 15 11 Si 0.90 20.56 29.54 -169.99 -5.02 15.53 15 12 H -0.28 -6.35 7.11 56.52 0.40 -5.95 15 13 H -0.28 -6.49 7.11 56.52 0.40 -6.09 15 14 H -0.27 -6.28 7.11 56.52 0.40 -5.87 15 15 C -0.17 -4.16 5.08 -26.59 -0.14 -4.29 15 16 C 0.08 1.71 6.62 37.21 0.25 1.95 15 17 O -0.40 -8.64 10.41 -35.23 -0.37 -9.01 15 18 H 0.06 0.89 8.14 -51.93 -0.42 0.47 15 19 H 0.05 0.82 8.14 -51.93 -0.42 0.39 15 20 H 0.06 0.93 8.14 -51.92 -0.42 0.51 15 21 H 0.06 1.36 8.14 -51.93 -0.42 0.93 15 22 H 0.05 1.10 8.14 -51.93 -0.42 0.68 15 23 H 0.38 10.27 7.17 45.56 0.33 10.59 15 24 H 0.27 6.76 8.31 -40.82 -0.34 6.42 15 25 H 0.03 0.76 8.14 -51.93 -0.42 0.34 15 26 H 0.10 2.62 6.01 -51.92 -0.31 2.31 15 27 H 0.07 1.34 8.14 -51.93 -0.42 0.92 15 28 H 0.06 1.30 7.38 -51.93 -0.38 0.91 15 LS Contribution 224.99 15.07 3.39 3.39 Total: -1.00 -27.61 224.99 -5.23 -32.84 By element: Atomic # 1 Polarization: 11.95 SS G_CDS: -3.18 Total: 8.76 kcal Atomic # 6 Polarization: -11.65 SS G_CDS: -0.13 Total: -11.78 kcal Atomic # 7 Polarization: -23.79 SS G_CDS: 0.54 Total: -23.26 kcal Atomic # 8 Polarization: -24.67 SS G_CDS: -0.82 Total: -25.49 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.53 kcal Total LS contribution 3.39 Total: 3.39 kcal Total: -27.61 -5.23 -32.84 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085879009.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.548 kcal (2) G-P(sol) polarization free energy of solvation -27.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds