Wall clock time and date at job start Mon Mar 30 2020 02:11:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08998 * 109.48895 * 2 1 4 4 C 1.53095 * 109.47885 * 239.97430 * 2 1 3 5 5 C 1.53178 * 109.16080 * 182.40869 * 4 2 1 6 6 O 1.42903 * 109.54397 * 176.84792 * 5 4 2 7 7 C 1.50701 * 109.62041 * 297.07140 * 5 4 2 8 8 H 1.08002 * 119.99413 * 359.59889 * 7 5 4 9 9 C 1.37877 * 120.00108 * 179.60316 * 7 5 4 10 10 N 1.31505 * 120.00304 * 359.97438 * 9 7 5 11 11 Si 1.86805 * 119.99832 * 179.97438 * 9 7 5 12 12 H 1.48504 * 109.46756 * 89.99630 * 11 9 7 13 13 H 1.48496 * 109.47135 * 209.99862 * 11 9 7 14 14 H 1.48500 * 109.47170 * 329.99991 * 11 9 7 15 15 C 1.53176 * 109.03609 * 56.98198 * 5 4 2 16 16 C 1.53095 * 109.16286 * 303.01594 * 15 5 4 17 17 O 1.42903 * 109.41530 * 57.61206 * 16 15 5 18 18 H 1.08994 * 109.47573 * 180.02562 * 1 2 3 19 19 H 1.09004 * 109.47569 * 300.02764 * 1 2 3 20 20 H 1.09009 * 109.47458 * 60.02557 * 1 2 3 21 21 H 1.08998 * 109.52174 * 62.50609 * 4 2 1 22 22 H 1.08998 * 109.52079 * 302.31113 * 4 2 1 23 23 H 0.96703 * 114.00266 * 180.44662 * 6 5 4 24 24 H 0.96993 * 120.00218 * 180.02562 * 10 9 7 25 25 H 1.09001 * 109.52789 * 62.92535 * 15 5 4 26 26 H 1.09007 * 109.52321 * 183.11250 * 15 5 4 27 27 H 1.08997 * 109.47843 * 177.59528 * 16 15 5 28 28 H 1.08997 * 109.48336 * 297.62823 * 16 15 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8936 1.0275 0.0000 4 6 2.0404 -0.7222 -1.2496 5 6 3.5710 -0.7708 -1.2122 6 8 4.0536 -1.5073 -2.3378 7 6 4.1229 0.6309 -1.2527 8 1 3.4507 1.4745 -1.3070 9 6 5.4859 0.8363 -1.2206 10 7 6.3044 -0.1909 -1.1541 11 14 6.1700 2.5738 -1.2715 12 1 6.3096 3.0916 0.1133 13 1 7.4998 2.5631 -1.9324 14 1 5.2445 3.4480 -2.0359 15 6 4.0175 -1.4601 0.0808 16 6 3.4306 -0.7094 1.2790 17 8 2.0065 -0.6742 1.1664 18 1 -0.3634 -1.0276 0.0005 19 1 -0.3634 0.5143 0.8897 20 1 -0.3634 0.5135 -0.8903 21 1 1.7148 -0.1842 -2.1399 22 1 1.6442 -1.7374 -1.2710 23 1 5.0169 -1.5840 -2.3740 24 1 7.2632 -0.0463 -1.1311 25 1 3.6612 -2.4903 0.0863 26 1 5.1058 -1.4499 0.1420 27 1 3.7099 -1.2204 2.2004 28 1 3.8191 0.3089 1.2958 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085879009.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:23 Heat of formation + Delta-G solvation = -131.815800 kcal Electronic energy + Delta-G solvation = -12376.474790 eV Core-core repulsion = 10198.083817 eV Total energy + Delta-G solvation = -2178.390974 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -40.47401 -37.35372 -34.22285 -33.59672 -32.27161 -28.62955 -27.11988 -24.32831 -22.83079 -20.95003 -18.62181 -17.20445 -17.06202 -16.86457 -15.90785 -15.55780 -15.06770 -14.52297 -13.97239 -13.54943 -13.35569 -13.00160 -12.84919 -12.62432 -12.44328 -12.33786 -12.08847 -11.83683 -11.35122 -10.98424 -10.66760 -10.27034 -10.04360 -8.18190 -6.36404 1.38869 1.41989 1.50634 2.37585 2.98776 3.04141 3.82243 4.21696 4.29574 4.39268 4.53219 4.63609 4.72925 4.78329 4.86502 4.98788 5.13831 5.22071 5.28993 5.35943 5.50393 5.55369 5.91876 6.18673 6.47060 6.68654 7.33088 7.44342 8.83315 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.043797 B = 0.016347 C = 0.015174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 639.166043 B = 1712.487586 C = 1844.784188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.094 3.906 3 H 0.051 0.949 4 C -0.123 4.123 5 C 0.229 3.771 6 O -0.605 6.605 7 C -0.549 4.549 8 H 0.054 0.946 9 C 0.030 3.970 10 N -0.913 5.913 11 Si 0.955 3.045 12 H -0.273 1.273 13 H -0.281 1.281 14 H -0.273 1.273 15 C -0.167 4.167 16 C 0.083 3.917 17 O -0.398 6.398 18 H 0.062 0.938 19 H 0.072 0.928 20 H 0.083 0.917 21 H 0.060 0.940 22 H 0.049 0.951 23 H 0.375 0.625 24 H 0.269 0.731 25 H 0.030 0.970 26 H 0.083 0.917 27 H 0.095 0.905 28 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.312 1.372 3.057 6.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.037 3.963 3 H 0.069 0.931 4 C -0.161 4.161 5 C 0.190 3.810 6 O -0.414 6.414 7 C -0.587 4.587 8 H 0.072 0.928 9 C -0.170 4.170 10 N -0.554 5.554 11 Si 0.780 3.220 12 H -0.199 1.199 13 H -0.207 1.207 14 H -0.198 1.198 15 C -0.205 4.205 16 C 0.006 3.994 17 O -0.318 6.318 18 H 0.081 0.919 19 H 0.091 0.909 20 H 0.102 0.898 21 H 0.079 0.921 22 H 0.068 0.932 23 H 0.224 0.776 24 H 0.079 0.921 25 H 0.049 0.951 26 H 0.101 0.899 27 H 0.113 0.887 28 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -5.899 1.203 3.067 6.757 hybrid contribution 1.594 0.814 -0.279 1.811 sum -4.305 2.017 2.788 5.511 Atomic orbital electron populations 1.21760 0.91068 1.03047 1.03288 1.22072 0.95720 0.94762 0.83767 0.93058 1.22037 0.95689 0.99750 0.98598 1.18979 0.90194 0.89219 0.82636 1.86099 1.27535 1.77609 1.50161 1.21886 0.92369 0.93148 1.51284 0.92752 1.25656 0.97152 1.00725 0.93488 1.69668 1.03766 1.31171 1.50754 0.85608 0.77648 0.80353 0.78343 1.19904 1.20692 1.19822 1.22662 1.03218 0.96903 0.97713 1.22355 0.79920 0.99558 0.97552 1.87715 1.21972 1.78410 1.43725 0.91873 0.90905 0.89774 0.92100 0.93181 0.77560 0.92101 0.95098 0.89868 0.88678 0.93921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.95 9.56 71.98 0.69 -3.26 15 2 C 0.09 3.71 3.03 30.62 0.09 3.80 15 3 H 0.05 2.13 6.88 -2.39 -0.02 2.12 15 4 C -0.12 -5.46 4.53 30.69 0.14 -5.32 15 5 C 0.23 11.65 0.85 -11.42 -0.01 11.64 15 6 O -0.61 -32.98 12.97 -148.98 -1.93 -34.91 15 7 C -0.55 -29.14 6.50 25.60 0.17 -28.97 15 8 H 0.05 2.88 6.93 -2.91 -0.02 2.85 15 9 C 0.03 1.54 5.22 84.66 0.44 1.98 15 10 N -0.91 -48.34 9.69 21.45 0.21 -48.13 15 11 Si 0.95 41.71 29.54 68.60 2.03 43.74 15 12 H -0.27 -11.64 7.11 99.48 0.71 -10.93 15 13 H -0.28 -12.09 7.11 99.48 0.71 -11.38 15 14 H -0.27 -11.88 7.11 99.48 0.71 -11.17 15 15 C -0.17 -8.02 5.08 30.69 0.16 -7.87 15 16 C 0.08 3.54 6.62 72.01 0.48 4.02 15 17 O -0.40 -16.57 10.41 -148.98 -1.55 -18.12 15 18 H 0.06 1.78 8.14 -2.39 -0.02 1.76 15 19 H 0.07 1.90 8.14 -2.38 -0.02 1.88 15 20 H 0.08 2.14 8.14 -2.38 -0.02 2.13 15 21 H 0.06 2.65 8.14 -2.39 -0.02 2.63 15 22 H 0.05 2.17 8.14 -2.39 -0.02 2.15 15 23 H 0.38 20.64 7.17 -74.06 -0.53 20.11 15 24 H 0.27 13.57 8.31 -92.71 -0.77 12.80 15 25 H 0.03 1.45 8.14 -2.39 -0.02 1.43 15 26 H 0.08 4.31 6.01 -2.38 -0.01 4.30 15 27 H 0.10 3.53 8.14 -2.39 -0.02 3.51 15 28 H 0.04 1.94 7.38 -2.39 -0.02 1.92 15 Total: -1.00 -56.82 224.99 1.52 -55.30 By element: Atomic # 1 Polarization: 25.49 SS G_CDS: 0.61 Total: 26.10 kcal Atomic # 6 Polarization: -26.13 SS G_CDS: 2.15 Total: -23.98 kcal Atomic # 7 Polarization: -48.34 SS G_CDS: 0.21 Total: -48.13 kcal Atomic # 8 Polarization: -49.54 SS G_CDS: -3.48 Total: -53.03 kcal Atomic # 14 Polarization: 41.71 SS G_CDS: 2.03 Total: 43.74 kcal Total: -56.82 1.52 -55.30 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085879009.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.516 kcal (2) G-P(sol) polarization free energy of solvation -56.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds