Wall clock time and date at job start Mon Mar 30 2020 02:02:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86804 * 120.00062 * 2 1 4 4 H 1.48501 * 109.47197 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47031 * 300.00437 * 3 2 1 6 6 H 1.48501 * 109.47050 * 59.99894 * 3 2 1 7 7 C 1.37878 * 120.00209 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99883 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99654 * 359.97438 * 7 2 1 10 10 O 1.42899 * 108.65521 * 61.71693 * 9 7 2 11 11 C 1.50290 * 108.78413 * 180.02562 * 9 7 2 12 12 C 1.54267 * 108.65447 * 213.08220 * 11 9 7 13 13 C 1.45983 * 111.73325 * 281.87297 * 12 11 9 14 14 O 1.44223 * 112.10534 * 60.06858 * 13 12 11 15 15 C 1.39966 * 112.36571 * 277.41190 * 14 13 12 16 16 C 1.54341 * 112.57372 * 97.11934 * 15 14 13 17 17 H 0.96993 * 119.99585 * 359.97438 * 1 2 3 18 18 H 0.96697 * 114.00767 * 298.28188 * 10 9 7 19 19 H 1.09002 * 109.63359 * 93.28317 * 11 9 7 20 20 H 1.08999 * 109.63291 * 332.88318 * 11 9 7 21 21 H 1.08998 * 109.03121 * 42.45986 * 12 11 9 22 22 H 1.09007 * 109.03138 * 161.28979 * 12 11 9 23 23 H 1.09002 * 108.95522 * 180.74131 * 13 12 11 24 24 H 1.09001 * 108.95565 * 299.47729 * 13 12 11 25 25 H 1.09006 * 108.86197 * 217.92142 * 15 14 13 26 26 H 1.08998 * 108.86146 * 336.31987 * 15 14 13 27 27 H 1.09001 * 109.08445 * 79.81875 * 16 15 14 28 28 H 1.08997 * 109.08361 * 198.86970 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 8 0.4665 -2.5739 -1.1925 11 6 2.2413 -3.6297 -0.0005 12 6 1.6452 -4.8078 -0.7984 13 6 0.6610 -5.5483 -0.0147 14 8 -0.4448 -4.7170 0.3930 15 6 -0.1564 -3.9734 1.5432 16 6 0.2989 -2.5345 1.2197 17 1 -0.4849 0.8400 0.0004 18 1 -0.1993 -1.8769 -1.2697 19 1 2.4384 -3.9439 1.0244 20 1 3.1700 -3.3031 -0.4685 21 1 1.1656 -4.4215 -1.6977 22 1 2.4496 -5.4836 -1.0887 23 1 0.2801 -6.3749 -0.6145 24 1 1.1464 -5.9507 0.8744 25 1 -1.0491 -3.9287 2.1671 26 1 0.6346 -4.4767 2.0990 27 1 -0.5777 -1.9229 1.0060 28 1 0.8186 -2.1223 2.0846 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085879465.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:03 Heat of formation + Delta-G solvation = -120.130095 kcal Electronic energy + Delta-G solvation = -12459.382449 eV Core-core repulsion = 10281.498205 eV Total energy + Delta-G solvation = -2177.884244 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -40.45621 -37.50678 -34.35460 -33.74945 -32.29099 -28.65624 -26.82628 -24.66360 -22.17516 -20.57361 -18.98157 -17.67081 -16.93793 -16.67187 -15.79773 -15.65059 -14.88043 -14.48847 -14.08294 -13.88739 -13.38408 -12.96088 -12.83394 -12.55281 -12.29170 -11.99815 -11.76905 -11.32739 -11.18323 -11.00042 -10.56459 -10.30777 -9.77298 -8.13076 -6.32779 1.36880 1.40136 1.50466 2.39074 3.06315 3.21147 4.04399 4.27803 4.33587 4.39697 4.48073 4.59936 4.69233 4.73403 4.98468 5.05971 5.09931 5.16977 5.50495 5.53079 5.64119 5.88812 6.12843 6.27527 6.58361 6.75623 7.39186 7.60168 8.86542 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.067233 B = 0.014292 C = 0.013299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 416.363429 B = 1958.665536 C = 2104.979573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.026 3.974 3 Si 0.955 3.045 4 H -0.273 1.273 5 H -0.281 1.281 6 H -0.278 1.278 7 C -0.566 4.566 8 H 0.048 0.952 9 C 0.239 3.761 10 O -0.585 6.585 11 C -0.096 4.096 12 C -0.146 4.146 13 C 0.064 3.936 14 O -0.386 6.386 15 C 0.065 3.935 16 C -0.148 4.148 17 H 0.266 0.734 18 H 0.362 0.638 19 H 0.063 0.937 20 H 0.048 0.952 21 H 0.063 0.937 22 H 0.083 0.917 23 H 0.098 0.902 24 H 0.062 0.938 25 H 0.073 0.927 26 H 0.055 0.945 27 H 0.059 0.941 28 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.652 -7.085 2.208 7.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.174 4.174 3 Si 0.781 3.219 4 H -0.197 1.197 5 H -0.207 1.207 6 H -0.204 1.204 7 C -0.604 4.604 8 H 0.066 0.934 9 C 0.200 3.800 10 O -0.393 6.393 11 C -0.133 4.133 12 C -0.183 4.183 13 C -0.011 4.011 14 O -0.305 6.305 15 C -0.012 4.012 16 C -0.187 4.187 17 H 0.075 0.925 18 H 0.210 0.790 19 H 0.081 0.919 20 H 0.067 0.933 21 H 0.081 0.919 22 H 0.102 0.898 23 H 0.116 0.884 24 H 0.080 0.920 25 H 0.092 0.908 26 H 0.073 0.927 27 H 0.078 0.922 28 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 1.717 -7.495 2.007 7.947 hybrid contribution 0.276 1.886 0.234 1.921 sum 1.993 -5.609 2.242 6.361 Atomic orbital electron populations 1.69822 1.06728 1.27566 1.50983 1.25720 0.95808 1.02211 0.93625 0.85563 0.78901 0.79759 0.77658 1.19722 1.20654 1.20350 1.22339 0.93320 0.93232 1.51541 0.93359 1.18560 0.87437 0.92027 0.81938 1.86168 1.53146 1.55109 1.44836 1.21295 0.97560 0.95083 0.99409 1.20938 0.99266 0.97137 1.00996 1.21618 0.87938 0.92505 0.99051 1.87720 1.37888 1.58728 1.46137 1.22369 0.99880 0.91870 0.87112 1.23133 1.00728 0.95962 0.98896 0.92492 0.79038 0.91865 0.93325 0.91859 0.89839 0.88362 0.91970 0.90845 0.92723 0.92249 0.94133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.45 9.77 21.45 0.21 -50.25 15 2 C 0.03 1.43 5.20 84.65 0.44 1.87 15 3 Si 0.96 43.43 29.54 68.60 2.03 45.46 15 4 H -0.27 -12.24 7.11 99.48 0.71 -11.53 15 5 H -0.28 -12.59 7.11 99.48 0.71 -11.88 15 6 H -0.28 -12.28 7.11 99.48 0.71 -11.58 15 7 C -0.57 -31.39 7.99 25.60 0.20 -31.19 15 8 H 0.05 2.68 7.45 -2.91 -0.02 2.66 15 9 C 0.24 12.10 0.64 -11.79 -0.01 12.09 15 10 O -0.59 -31.48 9.97 -139.19 -1.39 -32.87 15 11 C -0.10 -4.09 5.02 30.15 0.15 -3.94 15 12 C -0.15 -5.32 5.34 28.87 0.15 -5.17 15 13 C 0.06 2.10 6.11 69.83 0.43 2.53 15 14 O -0.39 -15.57 9.86 -130.63 -1.29 -16.85 15 15 C 0.07 2.54 6.09 72.44 0.44 2.98 15 16 C -0.15 -7.11 4.61 31.67 0.15 -6.96 15 17 H 0.27 14.00 8.31 -92.71 -0.77 13.23 15 18 H 0.36 20.58 7.09 -74.06 -0.52 20.06 15 19 H 0.06 2.44 7.08 -2.39 -0.02 2.43 15 20 H 0.05 2.12 7.51 -2.39 -0.02 2.10 15 21 H 0.06 2.70 6.32 -2.39 -0.02 2.69 15 22 H 0.08 2.46 8.14 -2.38 -0.02 2.44 15 23 H 0.10 2.69 8.14 -2.39 -0.02 2.67 15 24 H 0.06 1.72 7.34 -2.39 -0.02 1.70 15 25 H 0.07 2.61 8.14 -2.38 -0.02 2.59 15 26 H 0.05 1.85 6.53 -2.39 -0.02 1.83 15 27 H 0.06 3.17 6.41 -2.39 -0.02 3.15 15 28 H 0.04 1.96 7.98 -2.39 -0.02 1.94 15 Total: -1.00 -59.95 217.89 2.14 -57.80 By element: Atomic # 1 Polarization: 23.88 SS G_CDS: 0.63 Total: 24.51 kcal Atomic # 6 Polarization: -29.75 SS G_CDS: 1.96 Total: -27.80 kcal Atomic # 7 Polarization: -50.45 SS G_CDS: 0.21 Total: -50.25 kcal Atomic # 8 Polarization: -47.04 SS G_CDS: -2.68 Total: -49.72 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.46 kcal Total: -59.95 2.14 -57.80 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085879465.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.328 kcal (2) G-P(sol) polarization free energy of solvation -59.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds