Wall clock time and date at job start Mon Mar 30 2020 02:02:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31525 * 1 3 3 Si 1.86800 * 119.99971 * 2 1 4 4 H 1.48498 * 109.46946 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47212 * 299.99844 * 3 2 1 6 6 H 1.48497 * 109.47100 * 60.00297 * 3 2 1 7 7 C 1.37879 * 119.99639 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99856 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00119 * 0.02562 * 7 2 1 10 10 O 1.42903 * 108.77958 * 298.40470 * 9 7 2 11 11 C 1.54153 * 108.81389 * 180.02562 * 9 7 2 12 12 C 1.53470 * 111.65848 * 197.63654 * 11 9 7 13 13 C 1.51073 * 111.29456 * 319.24051 * 12 11 9 14 14 O 1.43390 * 107.46821 * 94.47802 * 13 12 11 15 15 C 1.36320 * 118.04049 * 276.35649 * 14 13 12 16 16 C 1.51007 * 108.75428 * 56.80724 * 9 7 2 17 17 H 0.96996 * 119.99637 * 359.97438 * 1 2 3 18 18 H 0.96702 * 114.00150 * 61.59483 * 10 9 7 19 19 H 1.08995 * 109.04606 * 77.06837 * 11 9 7 20 20 H 1.09005 * 108.97848 * 318.15269 * 11 9 7 21 21 H 1.08996 * 109.11280 * 198.77336 * 12 11 9 22 22 H 1.09001 * 109.11100 * 79.70585 * 12 11 9 23 23 H 1.09001 * 109.85673 * 334.99297 * 13 12 11 24 24 H 1.08995 * 109.85808 * 213.97382 * 13 12 11 25 25 H 1.09002 * 109.15853 * 182.29285 * 15 14 13 26 26 H 1.09003 * 109.15464 * 301.52425 * 15 14 13 27 27 H 1.09001 * 109.55808 * 93.23997 * 16 9 7 28 28 H 1.08998 * 109.48277 * 333.07907 * 16 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3153 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 8 0.4632 -2.5755 1.1903 11 6 2.2661 -3.6593 0.0018 12 6 1.6164 -4.9809 -0.4302 13 6 0.2392 -5.1375 0.1709 14 8 -0.7078 -4.6544 -0.7913 15 6 -0.9507 -3.3137 -0.8341 16 6 0.3308 -2.5285 -1.1964 17 1 -0.4849 0.8400 0.0004 18 1 -0.2023 -1.8780 1.2668 19 1 2.6730 -3.7747 1.0064 20 1 3.0779 -3.4208 -0.6853 21 1 2.2442 -5.8103 -0.1050 22 1 1.5358 -5.0003 -1.5171 23 1 0.1667 -4.5525 1.0877 24 1 0.0461 -6.1886 0.3851 25 1 -1.7170 -3.1127 -1.5828 26 1 -1.3083 -2.9836 0.1412 27 1 0.8332 -3.0175 -2.0310 28 1 0.0663 -1.5089 -1.4766 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085879469.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:05 Heat of formation + Delta-G solvation = -101.172374 kcal Electronic energy + Delta-G solvation = -12532.109933 eV Core-core repulsion = 10355.047758 eV Total energy + Delta-G solvation = -2177.062175 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -39.05106 -35.71388 -32.62002 -32.10436 -30.01445 -26.70768 -25.09880 -23.04344 -20.61647 -18.46032 -17.09315 -15.58262 -15.40569 -15.14906 -14.38238 -13.99441 -13.36925 -12.71082 -12.48433 -11.80829 -11.39706 -11.12398 -10.86656 -10.70523 -10.34296 -10.26906 -10.03943 -9.88876 -9.40977 -9.08243 -8.64377 -8.42996 -7.84196 -6.14356 -4.27503 3.21445 3.30272 3.34580 4.31862 4.73855 5.07993 5.66602 5.86220 5.94244 6.05776 6.24534 6.35274 6.51170 6.63169 6.67808 6.75239 6.89977 6.94253 7.03711 7.38085 7.60242 7.73144 7.94251 8.23917 8.57255 8.76960 9.39789 9.53454 10.86060 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.065390 B = 0.014947 C = 0.013503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 428.097675 B = 1872.815552 C = 2073.123791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.065 3.935 3 Si 0.898 3.102 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.532 4.532 8 H 0.057 0.943 9 C 0.246 3.754 10 O -0.592 6.592 11 C -0.098 4.098 12 C -0.147 4.147 13 C 0.060 3.940 14 O -0.400 6.400 15 C 0.080 3.920 16 C -0.170 4.170 17 H 0.265 0.735 18 H 0.377 0.623 19 H 0.053 0.947 20 H 0.057 0.943 21 H 0.051 0.949 22 H 0.062 0.938 23 H 0.087 0.913 24 H 0.068 0.932 25 H 0.066 0.934 26 H 0.044 0.956 27 H 0.037 0.963 28 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.037 -4.660 -0.585 4.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.136 4.136 3 Si 0.726 3.274 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.571 4.571 8 H 0.076 0.924 9 C 0.207 3.793 10 O -0.403 6.403 11 C -0.136 4.136 12 C -0.185 4.185 13 C -0.016 4.016 14 O -0.319 6.319 15 C 0.003 3.997 16 C -0.208 4.208 17 H 0.075 0.925 18 H 0.228 0.772 19 H 0.072 0.928 20 H 0.076 0.924 21 H 0.070 0.930 22 H 0.081 0.919 23 H 0.105 0.895 24 H 0.086 0.914 25 H 0.084 0.916 26 H 0.062 0.938 27 H 0.056 0.944 28 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 0.195 -5.167 -0.594 5.205 hybrid contribution 0.382 1.752 -0.047 1.794 sum 0.577 -3.415 -0.641 3.523 Atomic orbital electron populations 1.69669 1.05817 1.27074 1.51239 1.25003 0.95018 0.99375 0.94187 0.86444 0.80127 0.83219 0.77623 1.19824 1.20939 1.20889 1.21956 0.93716 0.91297 1.50091 0.92439 1.18543 0.87132 0.91447 0.82190 1.86118 1.53531 1.55361 1.45279 1.21845 0.98142 0.93334 1.00286 1.21986 0.97306 0.97979 1.01224 1.22564 0.87518 0.97996 0.93477 1.86130 1.62484 1.24492 1.58825 1.21640 0.97028 0.80797 1.00234 1.22849 0.96195 1.02610 0.99158 0.92462 0.77208 0.92787 0.92396 0.93016 0.91907 0.89468 0.91355 0.91578 0.93764 0.94380 0.88037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.68 9.74 55.43 0.54 -23.14 15 2 C 0.06 1.71 4.95 -17.81 -0.09 1.63 15 3 Si 0.90 20.77 29.54 -169.99 -5.02 15.75 15 4 H -0.27 -6.34 7.11 56.52 0.40 -5.94 15 5 H -0.28 -6.51 7.11 56.52 0.40 -6.10 15 6 H -0.28 -6.54 7.11 56.52 0.40 -6.13 15 7 C -0.53 -14.37 8.10 -34.44 -0.28 -14.65 15 8 H 0.06 1.56 7.69 -52.48 -0.40 1.16 15 9 C 0.25 6.08 0.65 -92.17 -0.06 6.02 15 10 O -0.59 -14.91 8.93 -35.23 -0.31 -15.23 15 11 C -0.10 -2.15 4.97 -25.89 -0.13 -2.28 15 12 C -0.15 -2.80 5.43 -27.46 -0.15 -2.95 15 13 C 0.06 1.16 6.48 36.19 0.23 1.39 15 14 O -0.40 -8.49 9.90 -20.77 -0.21 -8.70 15 15 C 0.08 1.76 6.32 38.00 0.24 2.00 15 16 C -0.17 -4.06 4.64 -26.89 -0.12 -4.19 15 17 H 0.27 6.71 8.31 -40.82 -0.34 6.37 15 18 H 0.38 9.79 6.36 45.56 0.29 10.08 15 19 H 0.05 1.17 8.14 -51.93 -0.42 0.75 15 20 H 0.06 1.23 7.95 -51.93 -0.41 0.82 15 21 H 0.05 0.84 8.14 -51.93 -0.42 0.42 15 22 H 0.06 1.21 7.31 -51.93 -0.38 0.83 15 23 H 0.09 1.84 5.37 -51.93 -0.28 1.56 15 24 H 0.07 1.13 8.14 -51.93 -0.42 0.70 15 25 H 0.07 1.35 8.14 -51.93 -0.42 0.93 15 26 H 0.04 1.01 6.06 -51.93 -0.31 0.69 15 27 H 0.04 0.89 7.16 -51.93 -0.37 0.52 15 28 H 0.10 2.66 5.56 -51.93 -0.29 2.37 15 LS Contribution 215.32 15.07 3.24 3.24 Total: -1.00 -26.98 215.32 -5.10 -32.08 By element: Atomic # 1 Polarization: 12.01 SS G_CDS: -2.99 Total: 9.03 kcal Atomic # 6 Polarization: -12.67 SS G_CDS: -0.35 Total: -13.03 kcal Atomic # 7 Polarization: -23.68 SS G_CDS: 0.54 Total: -23.14 kcal Atomic # 8 Polarization: -23.41 SS G_CDS: -0.52 Total: -23.93 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 3.24 Total: 3.24 kcal Total: -26.98 -5.10 -32.08 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085879469.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.096 kcal (2) G-P(sol) polarization free energy of solvation -26.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds