Wall clock time and date at job start Mon Mar 30 2020 02:02:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31525 * 1 3 3 Si 1.86800 * 119.99971 * 2 1 4 4 H 1.48498 * 109.46946 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47212 * 299.99844 * 3 2 1 6 6 H 1.48497 * 109.47100 * 60.00297 * 3 2 1 7 7 C 1.37879 * 119.99639 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99856 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00119 * 0.02562 * 7 2 1 10 10 O 1.42903 * 108.77958 * 298.40470 * 9 7 2 11 11 C 1.54153 * 108.81389 * 180.02562 * 9 7 2 12 12 C 1.53470 * 111.65848 * 197.63654 * 11 9 7 13 13 C 1.51073 * 111.29456 * 319.24051 * 12 11 9 14 14 O 1.43390 * 107.46821 * 94.47802 * 13 12 11 15 15 C 1.36320 * 118.04049 * 276.35649 * 14 13 12 16 16 C 1.51007 * 108.75428 * 56.80724 * 9 7 2 17 17 H 0.96996 * 119.99637 * 359.97438 * 1 2 3 18 18 H 0.96702 * 114.00150 * 61.59483 * 10 9 7 19 19 H 1.08995 * 109.04606 * 77.06837 * 11 9 7 20 20 H 1.09005 * 108.97848 * 318.15269 * 11 9 7 21 21 H 1.08996 * 109.11280 * 198.77336 * 12 11 9 22 22 H 1.09001 * 109.11100 * 79.70585 * 12 11 9 23 23 H 1.09001 * 109.85673 * 334.99297 * 13 12 11 24 24 H 1.08995 * 109.85808 * 213.97382 * 13 12 11 25 25 H 1.09002 * 109.15853 * 182.29285 * 15 14 13 26 26 H 1.09003 * 109.15464 * 301.52425 * 15 14 13 27 27 H 1.09001 * 109.55808 * 93.23997 * 16 9 7 28 28 H 1.08998 * 109.48277 * 333.07907 * 16 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3153 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 8 0.4632 -2.5755 1.1903 11 6 2.2661 -3.6593 0.0018 12 6 1.6164 -4.9809 -0.4302 13 6 0.2392 -5.1375 0.1709 14 8 -0.7078 -4.6544 -0.7913 15 6 -0.9507 -3.3137 -0.8341 16 6 0.3308 -2.5285 -1.1964 17 1 -0.4849 0.8400 0.0004 18 1 -0.2023 -1.8780 1.2668 19 1 2.6730 -3.7747 1.0064 20 1 3.0779 -3.4208 -0.6853 21 1 2.2442 -5.8103 -0.1050 22 1 1.5358 -5.0003 -1.5171 23 1 0.1667 -4.5525 1.0877 24 1 0.0461 -6.1886 0.3851 25 1 -1.7170 -3.1127 -1.5828 26 1 -1.3083 -2.9836 0.1412 27 1 0.8332 -3.0175 -2.0310 28 1 0.0663 -1.5089 -1.4766 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085879469.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:04 Heat of formation + Delta-G solvation = -119.065316 kcal Electronic energy + Delta-G solvation = -12532.885829 eV Core-core repulsion = 10355.047758 eV Total energy + Delta-G solvation = -2177.838071 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -40.79633 -37.55213 -34.37468 -34.05507 -31.86201 -28.59066 -26.84693 -24.89489 -22.29397 -20.28508 -19.06681 -17.43044 -17.17030 -16.90799 -16.20488 -15.77997 -15.15568 -14.54431 -14.17023 -13.56873 -13.30156 -13.00881 -12.64260 -12.49783 -12.24018 -12.10757 -11.75097 -11.62429 -11.19560 -10.92692 -10.49515 -10.33448 -9.74638 -8.14592 -6.35572 1.37416 1.41278 1.50960 2.38609 3.04239 3.13498 4.02872 4.22286 4.30019 4.38130 4.49092 4.63603 4.76700 4.97672 4.99221 5.03736 5.18884 5.30832 5.37992 5.51525 5.59819 5.80791 6.00430 6.24873 6.71393 6.88919 7.34947 7.49517 8.83437 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.065390 B = 0.014947 C = 0.013503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 428.097675 B = 1872.815552 C = 2073.123791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.027 3.973 3 Si 0.955 3.045 4 H -0.276 1.276 5 H -0.278 1.278 6 H -0.280 1.280 7 C -0.563 4.563 8 H 0.046 0.954 9 C 0.235 3.765 10 O -0.592 6.592 11 C -0.099 4.099 12 C -0.141 4.141 13 C 0.056 3.944 14 O -0.403 6.403 15 C 0.090 3.910 16 C -0.162 4.162 17 H 0.268 0.732 18 H 0.369 0.631 19 H 0.049 0.951 20 H 0.057 0.943 21 H 0.086 0.914 22 H 0.061 0.939 23 H 0.068 0.932 24 H 0.106 0.894 25 H 0.080 0.920 26 H 0.032 0.968 27 H 0.038 0.962 28 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.209 -5.307 -0.725 5.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.172 4.172 3 Si 0.782 3.218 4 H -0.200 1.200 5 H -0.204 1.204 6 H -0.205 1.205 7 C -0.601 4.601 8 H 0.064 0.936 9 C 0.196 3.804 10 O -0.402 6.402 11 C -0.136 4.136 12 C -0.178 4.178 13 C -0.019 4.019 14 O -0.322 6.322 15 C 0.013 3.987 16 C -0.201 4.201 17 H 0.078 0.922 18 H 0.219 0.781 19 H 0.068 0.932 20 H 0.075 0.925 21 H 0.105 0.895 22 H 0.080 0.920 23 H 0.086 0.914 24 H 0.123 0.877 25 H 0.098 0.902 26 H 0.050 0.950 27 H 0.057 0.943 28 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 0.367 -5.828 -0.735 5.886 hybrid contribution 0.337 1.942 0.016 1.971 sum 0.705 -3.886 -0.719 4.015 Atomic orbital electron populations 1.69748 1.06504 1.27794 1.50685 1.25631 0.95876 1.01977 0.93764 0.85555 0.78798 0.79773 0.77705 1.20029 1.20364 1.20530 1.22228 0.93474 0.93011 1.51385 0.93563 1.18739 0.87539 0.91907 0.82178 1.86141 1.53374 1.54876 1.45779 1.21826 0.97567 0.94025 1.00205 1.21932 0.97511 0.97340 1.01052 1.22748 0.87379 0.99637 0.92179 1.86132 1.63024 1.23658 1.59387 1.21490 0.96232 0.81058 0.99962 1.22703 0.97121 1.01456 0.98821 0.92224 0.78071 0.93185 0.92474 0.89549 0.92049 0.91389 0.87653 0.90175 0.94976 0.94339 0.90541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -47.91 9.74 21.45 0.21 -47.70 15 2 C 0.03 1.44 4.95 84.65 0.42 1.85 15 3 Si 0.96 42.49 29.54 68.60 2.03 44.52 15 4 H -0.28 -12.24 7.11 99.48 0.71 -11.54 15 5 H -0.28 -12.06 7.11 99.48 0.71 -11.35 15 6 H -0.28 -12.22 7.11 99.48 0.71 -11.52 15 7 C -0.56 -30.57 8.10 25.60 0.21 -30.36 15 8 H 0.05 2.54 7.69 -2.91 -0.02 2.52 15 9 C 0.24 11.60 0.65 -11.80 -0.01 11.59 15 10 O -0.59 -29.87 8.93 -148.98 -1.33 -31.20 15 11 C -0.10 -4.20 4.97 31.14 0.15 -4.05 15 12 C -0.14 -4.98 5.43 30.12 0.16 -4.82 15 13 C 0.06 2.01 6.48 71.35 0.46 2.47 15 14 O -0.40 -16.26 9.90 -97.22 -0.96 -17.22 15 15 C 0.09 3.87 6.32 72.52 0.46 4.32 15 16 C -0.16 -7.73 4.64 30.49 0.14 -7.59 15 17 H 0.27 13.48 8.31 -92.71 -0.77 12.71 15 18 H 0.37 19.43 6.36 -74.06 -0.47 18.96 15 19 H 0.05 2.13 8.14 -2.39 -0.02 2.11 15 20 H 0.06 2.40 7.95 -2.38 -0.02 2.38 15 21 H 0.09 2.48 8.14 -2.39 -0.02 2.46 15 22 H 0.06 2.21 7.31 -2.39 -0.02 2.19 15 23 H 0.07 2.76 5.37 -2.39 -0.01 2.75 15 24 H 0.11 3.05 8.14 -2.39 -0.02 3.03 15 25 H 0.08 3.17 8.14 -2.39 -0.02 3.15 15 26 H 0.03 1.46 6.06 -2.39 -0.01 1.44 15 27 H 0.04 1.77 7.16 -2.39 -0.02 1.76 15 28 H 0.08 4.03 5.56 -2.39 -0.01 4.01 15 Total: -1.00 -55.75 215.32 2.63 -53.12 By element: Atomic # 1 Polarization: 24.38 SS G_CDS: 0.68 Total: 25.06 kcal Atomic # 6 Polarization: -28.58 SS G_CDS: 2.00 Total: -26.58 kcal Atomic # 7 Polarization: -47.91 SS G_CDS: 0.21 Total: -47.70 kcal Atomic # 8 Polarization: -46.13 SS G_CDS: -2.29 Total: -48.42 kcal Atomic # 14 Polarization: 42.49 SS G_CDS: 2.03 Total: 44.52 kcal Total: -55.75 2.63 -53.12 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085879469.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.945 kcal (2) G-P(sol) polarization free energy of solvation -55.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds