Wall clock time and date at job start Mon Mar 30 2020 02:15:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42903 * 113.99864 * 2 1 4 4 C 1.52995 * 109.47053 * 180.02562 * 3 2 1 5 5 O 1.42897 * 109.47829 * 64.99821 * 4 3 2 6 6 C 1.50702 * 109.47284 * 185.00115 * 4 3 2 7 7 H 1.08001 * 120.00207 * 34.52100 * 6 4 3 8 8 C 1.37877 * 120.00180 * 214.24911 * 6 4 3 9 9 N 1.31511 * 119.99912 * 176.34516 * 8 6 4 10 10 Si 1.86799 * 119.99748 * 356.34554 * 8 6 4 11 11 H 1.48506 * 109.46993 * 92.08572 * 10 8 6 12 12 H 1.48507 * 109.47054 * 212.08232 * 10 8 6 13 13 H 1.48493 * 109.47345 * 332.08279 * 10 8 6 14 14 C 1.53008 * 109.47053 * 304.99556 * 4 3 2 15 15 C 1.52995 * 117.49983 * 255.80161 * 14 4 3 16 16 C 1.52994 * 117.49872 * 187.13896 * 14 4 3 17 17 H 1.08999 * 109.46892 * 179.97438 * 1 2 3 18 18 H 1.08998 * 109.47478 * 300.00242 * 1 2 3 19 19 H 1.09007 * 109.46810 * 60.00273 * 1 2 3 20 20 H 1.08998 * 109.47383 * 59.99747 * 3 2 1 21 21 H 1.09009 * 109.46883 * 300.00024 * 3 2 1 22 22 H 0.96702 * 113.99509 * 59.99802 * 5 4 3 23 23 H 0.97005 * 119.99596 * 179.97438 * 9 8 6 24 24 H 1.09002 * 115.54597 * 41.46651 * 14 4 3 25 25 H 1.09003 * 117.49886 * 359.97438 * 15 14 4 26 26 H 1.09004 * 117.50017 * 145.01756 * 15 14 4 27 27 H 1.09005 * 117.49856 * 214.97769 * 16 14 4 28 28 H 1.09004 * 117.50121 * 0.02562 * 16 14 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 8 3.9649 0.5797 -1.2219 6 6 4.1480 2.5560 0.1232 7 1 3.6600 3.3137 0.7184 8 6 5.3343 2.8417 -0.5187 9 7 5.8320 4.0580 -0.4700 10 14 6.2346 1.5009 -1.4575 11 1 5.8016 1.5151 -2.8779 12 1 7.6981 1.7424 -1.3837 13 1 5.9200 0.1797 -0.8572 14 6 3.9790 0.3195 1.1808 15 6 4.5870 1.0329 2.3899 16 6 5.4805 0.2142 1.4548 17 1 -0.3633 -1.0277 -0.0005 18 1 -0.3634 0.5138 0.8899 19 1 -0.3633 0.5138 -0.8901 20 1 1.6885 1.8465 0.8899 21 1 1.6885 1.8464 -0.8901 22 1 3.7176 1.0753 -2.0145 23 1 6.6668 4.2588 -0.9213 24 1 3.3693 -0.5637 1.3716 25 1 4.6714 2.1187 2.3436 26 1 4.3777 0.6189 3.3763 27 1 5.8587 -0.7382 1.8264 28 1 6.1524 0.7616 0.7937 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000087501965.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:32 Heat of formation + Delta-G solvation = -59.396560 kcal Electronic energy + Delta-G solvation = -12248.233881 eV Core-core repulsion = 10072.983241 eV Total energy + Delta-G solvation = -2175.250640 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -38.41372 -36.47777 -34.58689 -32.18014 -29.23519 -26.36974 -24.44884 -22.52614 -21.49724 -18.81951 -17.27853 -15.71855 -15.46583 -15.34885 -15.04544 -14.29981 -13.79789 -13.27032 -12.45860 -12.21926 -11.85743 -11.30774 -11.11076 -10.83386 -10.62066 -10.13366 -9.82684 -9.30904 -9.24873 -9.10674 -8.87034 -8.51742 -7.94475 -6.15313 -4.27210 3.46514 3.60230 3.87056 4.38885 4.56563 4.79563 5.17659 5.49374 5.61302 5.63467 5.82722 5.90118 6.00152 6.14812 6.18006 6.37776 6.56361 6.58263 6.70137 7.06437 7.22859 7.34536 7.57463 7.80781 8.16656 8.69517 8.84862 9.45457 10.93063 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.042391 B = 0.017541 C = 0.016101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 660.356865 B = 1595.897619 C = 1738.647949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.387 6.387 3 C 0.051 3.949 4 C 0.255 3.745 5 O -0.549 6.549 6 C -0.555 4.555 7 H 0.079 0.921 8 C 0.068 3.932 9 N -0.890 5.890 10 Si 0.936 3.064 11 H -0.304 1.304 12 H -0.331 1.331 13 H -0.237 1.237 14 C -0.126 4.126 15 C -0.165 4.165 16 C -0.176 4.176 17 H 0.075 0.925 18 H 0.033 0.967 19 H 0.033 0.967 20 H 0.048 0.952 21 H 0.043 0.957 22 H 0.361 0.639 23 H 0.266 0.734 24 H 0.088 0.912 25 H 0.113 0.887 26 H 0.071 0.929 27 H 0.073 0.927 28 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.055 -6.060 1.110 8.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.306 6.306 3 C -0.025 4.025 4 C 0.215 3.785 5 O -0.357 6.357 6 C -0.592 4.592 7 H 0.097 0.903 8 C -0.136 4.136 9 N -0.526 5.526 10 Si 0.773 3.227 11 H -0.233 1.233 12 H -0.264 1.264 13 H -0.162 1.162 14 C -0.145 4.145 15 C -0.202 4.202 16 C -0.213 4.213 17 H 0.094 0.906 18 H 0.052 0.948 19 H 0.051 0.949 20 H 0.066 0.934 21 H 0.061 0.939 22 H 0.209 0.791 23 H 0.075 0.925 24 H 0.106 0.894 25 H 0.131 0.869 26 H 0.089 0.911 27 H 0.091 0.909 28 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -5.596 -6.525 1.500 8.726 hybrid contribution -0.045 0.233 -0.877 0.909 sum -5.641 -6.292 0.623 8.473 Atomic orbital electron populations 1.22640 0.83157 1.01551 0.99256 1.87958 1.17839 1.29542 1.95237 1.23444 0.96539 0.82937 0.99588 1.18776 0.86889 0.91528 0.81285 1.86462 1.77878 1.54736 1.16602 1.21150 1.08548 0.95727 1.33779 0.90271 1.25181 0.96729 0.96149 0.95497 1.69960 1.20297 1.19798 1.42495 0.86064 0.74499 0.83712 0.78421 1.23265 1.26384 1.16243 1.22154 0.95136 1.00161 0.97044 1.23006 1.04103 1.01014 0.92075 1.22904 0.94328 1.00304 1.03740 0.90624 0.94828 0.94856 0.93354 0.93879 0.79129 0.92519 0.89385 0.86881 0.91079 0.90890 0.88596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 11.01 101.05 1.11 1.56 15 2 O -0.39 -7.55 9.74 -40.08 -0.39 -7.94 15 3 C 0.05 1.07 5.05 37.16 0.19 1.25 15 4 C 0.25 5.97 0.75 -91.77 -0.07 5.90 15 5 O -0.55 -12.91 7.84 -40.08 -0.31 -13.22 15 6 C -0.55 -14.79 6.40 -34.44 -0.22 -15.01 15 7 H 0.08 2.28 8.04 -52.49 -0.42 1.86 15 8 C 0.07 1.91 5.23 -17.82 -0.09 1.82 15 9 N -0.89 -26.52 13.96 55.43 0.77 -25.74 15 10 Si 0.94 23.59 21.88 -169.99 -3.72 19.87 15 11 H -0.30 -7.52 7.11 56.52 0.40 -7.12 15 12 H -0.33 -8.64 7.11 56.52 0.40 -8.24 15 13 H -0.24 -5.90 4.52 56.52 0.26 -5.64 15 14 C -0.13 -2.83 5.18 -90.62 -0.47 -3.30 15 15 C -0.17 -3.49 9.75 -26.70 -0.26 -3.75 15 16 C -0.18 -3.90 8.63 -26.70 -0.23 -4.13 15 17 H 0.08 0.94 8.14 -51.93 -0.42 0.51 15 18 H 0.03 0.45 8.14 -51.93 -0.42 0.03 15 19 H 0.03 0.44 8.14 -51.92 -0.42 0.02 15 20 H 0.05 0.98 8.14 -51.93 -0.42 0.56 15 21 H 0.04 0.86 8.14 -51.92 -0.42 0.43 15 22 H 0.36 7.71 8.00 45.56 0.36 8.08 15 23 H 0.27 7.53 8.31 -40.82 -0.34 7.19 15 24 H 0.09 1.91 7.47 -51.93 -0.39 1.53 15 25 H 0.11 2.65 6.60 -51.93 -0.34 2.31 15 26 H 0.07 1.29 8.14 -51.93 -0.42 0.86 15 27 H 0.07 1.42 8.14 -51.93 -0.42 1.00 15 28 H 0.10 2.33 3.63 -51.93 -0.19 2.14 15 LS Contribution 223.18 15.07 3.36 3.36 Total: -1.00 -30.27 223.18 -3.55 -33.82 By element: Atomic # 1 Polarization: 8.73 SS G_CDS: -3.22 Total: 5.51 kcal Atomic # 6 Polarization: -15.61 SS G_CDS: -0.04 Total: -15.65 kcal Atomic # 7 Polarization: -26.52 SS G_CDS: 0.77 Total: -25.74 kcal Atomic # 8 Polarization: -20.46 SS G_CDS: -0.70 Total: -21.16 kcal Atomic # 14 Polarization: 23.59 SS G_CDS: -3.72 Total: 19.87 kcal Total LS contribution 3.36 Total: 3.36 kcal Total: -30.27 -3.55 -33.82 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087501965.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.579 kcal (2) G-P(sol) polarization free energy of solvation -30.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds